mRNA_P-canaliculata_contig98865.24003.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98865.24003.1
Unique NamemRNA_P-canaliculata_contig98865.24003.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: D7G542_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G542_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 7.810e-26
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 LVTNDLYRDHGKGVDGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSFHQGQQG 165
            +VTNDLYRDH KG++GRKKADAARRWIK+HSISYTFVGDEFFPNPDFSFHQ   G
Sbjct: 1539 VVTNDLYRDHVKGIEGRKKADAARRWIKAHSISYTFVGDEFFPNPDFSFHQDGNG 1593
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BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: A0A835YPQ7_9STRA (Zc3h12a-like ribonuclease NYN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPQ7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.600e-17
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 LVTNDLYRDHGKGVDGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 147
            +VTND YRDH   + G KK +AARRW+K H+ISYTFVGDEF PNPDF F
Sbjct: 1178 VVTNDQYRDHYAALQGAKKREAARRWVKGHTISYTFVGDEFMPNPDFQF 1226
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BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: A0A485LSN2_9STRA (Aste57867_25204 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSN2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.320e-14
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 LVTNDLYRDHGKGVDGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 147
            LVTNDL+RDH + + G K+  A R W+K+H IS+T+VGDEFFPNPDF F
Sbjct:  910 LVTNDLFRDHLENIKGGKQKGAMREWLKNHRISFTWVGDEFFPNPDFRF 958
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BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: A0A6G0XRT9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRT9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.600e-13
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 LVTNDLYRDHGKGVDGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 147
            LVTND++RDH + +    + +A R W+KSH IS+T+VGDEFFPNPDF F
Sbjct:  862 LVTNDMFRDHVENIKSNAQRNAMRDWLKSHRISFTWVGDEFFPNPDFRF 910
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BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: A0A1V9YYR1_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YYR1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 7.670e-13
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 LVTNDLYRDHGKGVD--GRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 147
            +VTNDL+RDH +G++  G+KKA A R+W+ +H IS+T+VGDEFFPNPDF F
Sbjct: 1140 VVTNDLFRDHVEGMNASGQKKA-AMRQWLAAHRISFTWVGDEFFPNPDFRF 1189
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BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: A0A7S2CKB1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CKB1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.490e-12
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 LVTNDLYRDHGKGVDGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 147
            +VTND+YRDH   +   ++     +W++SH ISYTFVGDEF PNPDF F
Sbjct:  151 VVTNDMYRDHVGKITNHRERKECLQWMRSHLISYTFVGDEFLPNPDFKF 199
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BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: A0A067CRV2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CRV2_SAPPC)

HSP 1 Score: 68.6 bits (166), Expect = 4.970e-12
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 LVTNDLYRDHGKGVDGRKKADAA-RRWIKSHSISYTFVGDEFFPNPDFSFHQ 153
            +VTNDL+RDH  G+ G  +  AA R+W+ +H IS+T+VGDEF PNPDF F Q
Sbjct:  835 VVTNDLFRDHVDGLQGTGQQKAAMRQWLSAHCISFTWVGDEFLPNPDFRFPQ 886
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BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: A0A1V9YL36_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YL36_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.980e-12
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 LVTNDLYRDHGKGVDGRKKADAA-RRWIKSHSISYTFVGDEFFPNPDFSF 147
            +VTNDL+RDH  G+ G     AA R+W+ SH IS+T+VGDE+FPNPDF F
Sbjct:  843 VVTNDLFRDHVDGMTGTGAQKAAMRQWLNSHRISFTWVGDEYFPNPDFRF 892
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BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: W4FWI5_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWI5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.980e-12
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 LVTNDLYRDHGKGVDGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 147
            LVTNDL+RDH   +    K  A R W+K+H IS+T+VGDEF PNPDF F
Sbjct:  909 LVTNDLFRDHLDNIKPSHKRGAMRDWLKAHRISFTWVGDEFLPNPDFRF 957
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BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Match: T0QIU5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QIU5_SAPDV)

HSP 1 Score: 68.2 bits (165), Expect = 6.800e-12
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 LVTNDLYRDHGKGVDGRKKADAA-RRWIKSHSISYTFVGDEFFPNPDFSF 147
            +VTNDL+RDH  G+ G  +  AA R+W+ +H IS+T+VGDEF PNPDF F
Sbjct:  849 VVTNDLFRDHVDGLQGNGQTKAAMRQWLSAHCISFTWVGDEFLPNPDFRF 898
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98865.24003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G542_ECTSI7.810e-2685.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPQ7_9STRA6.600e-1769.39Zc3h12a-like ribonuclease NYN domain-containing pr... [more]
A0A485LSN2_9STRA1.320e-1463.27Aste57867_25204 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XRT9_9STRA1.600e-1359.18Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9YYR1_9STRA7.670e-1362.75N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S2CKB1_9STRA1.490e-1255.10Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A067CRV2_SAPPC4.970e-1257.69Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A1V9YL36_9STRA4.980e-1260.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W4FWI5_9STRA4.980e-1259.18Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
T0QIU5_SAPDV6.800e-1258.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98865contigP-canaliculata_contig98865:350..532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue1.4e-21
Seed eggNOG ortholog2880.D7G542
Preferred nameEBS1
KEGG koko:K11124,ko:K11132,ko:K18668
KEGG Pathwayko03015,map03015
GOsGO:0000018,GO:0000019,GO:0000184,GO:0000228,GO:0000723,GO:0000781,GO:0000784,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003824,GO:0004518,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005697,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007004,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010638,GO:0010639,GO:0010833,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0017148,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032207,GO:0032208,GO:0032210,GO:0032212,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034248,GO:0034249,GO:0034399,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0042162,GO:0042592,GO:0042886,GO:0043021,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045184,GO:0045910,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046907,GO:0048239,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051276,GO:0051641,GO:0051649,GO:0060249,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071897,GO:0071919,GO:0072695,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098687,GO:0098847,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1904356,GO:1904358,GO:1905324,GO:1990904,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001251,GO:2001252
EggNOG free text desc.zinc finger CCCH-type containing
EggNOG OGsKOG2162@1,KOG2162@2759,KOG3777@1,KOG3777@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03032
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.0737424-CDS-P-canaliculata_contig98865:349..5321622817350.0737424-CDS-P-canaliculata_contig98865:349..532Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98865 350..532 +
1693495239.8225665-CDS-P-canaliculata_contig98865:349..5321693495239.8225665-CDS-P-canaliculata_contig98865:349..532Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98865 350..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98865.24003.1prot_P-canaliculata_contig98865.24003.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98865 350..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98865.24003.1

>prot_P-canaliculata_contig98865.24003.1 ID=prot_P-canaliculata_contig98865.24003.1|Name=mRNA_P-canaliculata_contig98865.24003.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=61bp
LVTNDLYRDHGKGVDGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSFH
QGQQGGGGPP*
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mRNA from alignment at P-canaliculata_contig98865:350..532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98865.24003.1 ID=mRNA_P-canaliculata_contig98865.24003.1|Name=mRNA_P-canaliculata_contig98865.24003.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at P-canaliculata_contig98865:350..532+ (Pelvetia canaliculata dioecious)
TTGGTGACAAACGACCTTTACCGCGACCATGGGAAGGGTGTAGACGGCCG
GAAGAAGGCGGACGCGGCTCGACGCTGGATCAAGTCGCACTCCATCTCCT
ACACTTTCGTGGGGGACGAGTTCTTCCCCAACCCAGACTTTTCTTTTCAC
CAAGGCCAACAGGGTGGGGGCGGGCCGCCGTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig98865:350..532+

>mRNA_P-canaliculata_contig98865.24003.1 ID=mRNA_P-canaliculata_contig98865.24003.1|Name=mRNA_P-canaliculata_contig98865.24003.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at P-canaliculata_contig98865:350..532+ (Pelvetia canaliculata dioecious)
TTGGTGACAAACGACCTTTACCGCGACCATGGGAAGGGTGTAGACGGCCG
GAAGAAGGCGGACGCGGCTCGACGCTGGATCAAGTCGCACTCCATCTCCT
ACACTTTCGTGGGGGACGAGTTCTTCCCCAACCCAGACTTTTCTTTTCAC
CAAGGCCAACAGGGTGGGGGCGGGCCGCCGTGATTGGTGACAAACGACCT
TTACCGCGACCATGGGAAGGGTGTAGACGGCCGGAAGAAGGCGGACGCGG
CTCGACGCTGGATCAAGTCGCACTCCATCTCCTACACTTTCGTGGGGGAC
GAGTTCTTCCCCAACCCAGACTTTTCTTTTCACCAAGGCCAACAGGGTGG
GGGCGGGCCGCCGTGA
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