prot_P-canaliculata_contig98864.24002.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig98864.24002.1
Unique Name	prot_P-canaliculata_contig98864.24002.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	240

Homology

[Close]

BLAST of mRNA_P-canaliculata_contig98864.24002.1 vs. uniprot
Match: A0A848UBG7_9GAMM (Uncharacterized protein n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848UBG7_9GAMM)

HSP 1 Score: 186 bits (473), Expect = 1.900e-55
Identity = 103/231 (44.59%), Postives = 158/231 (68.40%), Query Frame = 0

Query:    1 MSFTLPATHLLRQYLRFAAVVVFLLLMIRAGYALWRLPAIEAGGDPLELFLTGLRFDLSLVGALCLVPVSVGPVLAMFDATRVVAKWFVLLWLFAALVLVLVTELLTPQLLAGEGVRPDASTFAELPALTASVGGLVADHPVPVTIGVLLAILILAAYVTRVESARFLRYPVSRGPAIALALVGGLVCLIAARSAIDPTAPALSVADARLGGEPIVDQIAMNSAWTTLRSL 231
            M  TLPATHLLRQ+L F   VVFLL +IRA Y LW+ P +      + LFL GLR+D++LVG +C+VPV +G +L+M D TR+ A++ + L+L   L+LVL+ EL+TP  L  +G+RPD      +    + +  +V++H +P+ +G LL +LIL A+ +R+E  RFL+Y +S   A+ LA++GGL C++A RS +D  +PALS+AD+++  +  V+ +A+N+A+ TL SL
Sbjct:    1 MKSTLPATHLLRQFLLFVLTVVFLLTLIRAAYGLWQYPKLADSDALVPLFLQGLRYDIALVGLVCIVPVILGTLLSMLDTTRLFARFLITLFLTGGLLLVLLLELITPWFLQTQGLRPDLQLLNGVENPGSVLSTIVSEHAIPLAVGALLCVLILIAFWSRMELQRFLKYRLSVPAALLLAILGGLACVVAIRSNVDLRSPALSLADSQISTDETVNDLALNTAYKTLYSL 231

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig98864.24002.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig98864.24002.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A848UBG7_9GAMM	1.900e-55	44.59	Uncharacterized protein n=1 Tax=Granulosicoccus sp...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 172..192
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 107..141
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 55..75
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 142..160
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 193..239
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..13
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 161..171
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 87..106
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 36..54
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 14..35
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 76..86
None	No IPR available	TMHMM	TMhelix		coord: 17..39
None	No IPR available	TMHMM	TMhelix		coord: 137..159
None	No IPR available	TMHMM	TMhelix		coord: 54..76
None	No IPR available	TMHMM	TMhelix		coord: 83..105
None	No IPR available	TMHMM	TMhelix		coord: 172..194

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig98864	contig	P-canaliculata_contig98864:300..1019 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig98864.24002.1	mRNA_P-canaliculata_contig98864.24002.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig98864 300..1019 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig98864.24002.1 ID=prot_P-canaliculata_contig98864.24002.1|Name=mRNA_P-canaliculata_contig98864.24002.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=240bp
MSFTLPATHLLRQYLRFAAVVVFLLLMIRAGYALWRLPAIEAGGDPLELF
LTGLRFDLSLVGALCLVPVSVGPVLAMFDATRVVAKWFVLLWLFAALVLV
LVTELLTPQLLAGEGVRPDASTFAELPALTASVGGLVADHPVPVTIGVLL
AILILAAYVTRVESARFLRYPVSRGPAIALALVGGLVCLIAARSAIDPTA
PALSVADARLGGEPIVDQIAMNSAWTTLRSLGASVLPGS*