prot_P-canaliculata_contig98812.23999.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig98812.23999.1
Unique Nameprot_P-canaliculata_contig98812.23999.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length268
Homology
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BLAST of mRNA_P-canaliculata_contig98812.23999.1 vs. uniprot
Match: A0A5C6BX72_9BACT (Tetratricopeptide repeat protein n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6BX72_9BACT)

HSP 1 Score: 186 bits (471), Expect = 3.080e-52
Identity = 106/264 (40.15%), Postives = 153/264 (57.95%), Query Frame = 0 
Query:    1 ALQYVDGWIETAADDPLPFLRKGELLMSAQRLSEAESYLTMSIQMDSNPHEAEKSLALLYEKTGNKIEALKILERETKANPTNVDLQLLMCNVLFGLNRDADAAAVLREVLRTHPLHFTATHALASSLAERGQPAEVIELVKPLLHEFPHDVSLSYLMAWANLELGDATESDRWMQIHLDARRALNRLFVELKKSTTGSQSRPDYLGIANEYFQYQWDKAEPALARAISNSPRSADAYRAMAKFSEMKGDPGKAADFNKAAESL 264
            AL +V+ WIE A+++P     K ELL +A  +  AE     +I+ D     A   LA L +  G   EA++  + E    P N+ L+LL C+ L  + R  +A   LR+VL    L+F A H+LAS LA+RG+ A+VIE++ PL++ F  D SL+YL+A A  E GDA  +D+ MQ HLD R+ L+ L +  K  + G   +   L IA +Y +YQWD AEP + RAI NSP + DA+  MA F   KGD  +A+ + +AA  +
Sbjct:  197 ALHHVNEWIEAASENPRAIAYKAELLATAGDMDAAEKLFRTAIRQDPALRRARHGLAKLMKYVGKYQEAVEQFDIEIANEPDNITLRLLRCDALLQMQRSDEAIEGLRDVLELDELNFPARHSLASQLAKRGEHAQVIEVLTPLMNRFADDASLNYLLASAYSEQGDAERADQHMQKHLDGRKRLDELAMITKSLSDGEPDQDALLMIARDYMKYQWDVAEPWIVRAIQNSPDTPDAFLVMADFQRKKGDLEQASQYVQAARQV 460
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BLAST of mRNA_P-canaliculata_contig98812.23999.1 vs. uniprot
Match: UPI001E2C7862 (tetratricopeptide repeat protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E2C7862)

HSP 1 Score: 70.1 bits (170), Expect = 4.660e-10
Identity = 47/166 (28.31%), Postives = 78/166 (46.99%), Query Frame = 0 
Query:   93 VLFGLNRDADAAAVLREVLRTHPLHFTATHALASSLAERGQPAEVIELVKPLLHEFPHDVSLSYLMAWANLELGDATESDRWMQIHLDARRALNRLFVELKKSTTGSQSRPD-YLGIANEYFQYQWDKAEPALARAISNSPRSADAYRAMAKFSEMKGDPGKAADF 257
            +L   NR  DA    +E+L  +P  F   ++LA+  A  G+  E+I  ++P                      G+   +D W+  +L+ARR LN+L +E ++   G    P+ Y+ +A  Y +Y+WD A+P +  A S  P+S    R    F E  G+  +AA +
Sbjct:  268 ILQEQNRIEDAETQFQELLDLYPNDFAIRYSLANMYALNGKGDEIISALRPXXXXXXXXXXXXXXXXXXXXXXGNFELADGWIGQYLNARRQLNQL-IEAERQRAGQPPNPEFYMQLAEAYLKYKWDDAKPWIDLAASLQPQSPRIRRGYQIFYENSGNWEQAARY 432
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BLAST of mRNA_P-canaliculata_contig98812.23999.1 vs. uniprot
Match: M2AS10_9BACT (Membrane or secreted protein n=1 Tax=Rhodopirellula europaea 6C TaxID=1263867 RepID=M2AS10_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.070e-6
Identity = 42/173 (24.28%), Postives = 82/173 (47.40%), Query Frame = 0 
Query:   87 QLLMCNVLFGLNRDADAAAVLREVLRTHPLHFTATHALASSLAERGQPAEVIELVKPLLHEFPHDVSLSYLMAWANLELGDATESDRWMQIHLDARRALNRLFVELKKSTTGSQSRPDY-LGIANEYFQYQWDKAEPALARAISNSPRSADAYRAMAKFSEMKGDPGKAADFN 258
            Q +   +L   ++  +A    +++L T    F   ++LA+  A +G   +++E ++P++H                   G+   ++ W+  +L ARR LN+L +E ++        P++ + +A  Y +++WD A+P L  A S  PRS    R   +F E  G+   AA ++
Sbjct:  269 QFIRALILQEQDQIDEAEDQFQKLLETFEDDFAIRYSLANMYALQGNGDKILETLEPIIHXXXXXXXXXXXXXXGETLRGNVALANDWIDQYLKARRQLNQL-LEAERIRGNRPPDPEFSMLLAETYLRFKWDDAKPWLDLAASLQPRSPRVRRGYRQFYENSGNFEHAARYS 440
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98812.23999.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A5C6BX72_9BACT3.080e-5240.15Tetratricopeptide repeat protein n=1 Tax=Planctomy... [more]
UPI001E2C78624.660e-1028.31tetratricopeptide repeat protein n=2 Tax=unclassif... [more]
M2AS10_9BACT1.070e-624.28Membrane or secreted protein n=1 Tax=Rhodopirellul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 235..267
e-value: 410.0
score: 0.7
coord: 50..83
e-value: 18.0
score: 12.8
coord: 16..49
e-value: 18.0
score: 12.6
NoneNo IPR availablePFAMPF14559TPR_19coord: 68..117
e-value: 6.2E-6
score: 26.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 3..188
e-value: 2.2E-21
score: 78.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 191..267
e-value: 3.8E-5
score: 25.2
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 15..264
IPR039340Transcription factor Tfc4/TFIIIC-102/Sfc4PANTHERPTHR23082TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATEDcoord: 54..161
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..151
score: 18.221

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98812contigP-canaliculata_contig98812:5..808 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98812.23999.1mRNA_P-canaliculata_contig98812.23999.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig98812 5..808 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig98812.23999.1 ID=prot_P-canaliculata_contig98812.23999.1|Name=mRNA_P-canaliculata_contig98812.23999.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=268bp
ALQYVDGWIETAADDPLPFLRKGELLMSAQRLSEAESYLTMSIQMDSNPH
EAEKSLALLYEKTGNKIEALKILERETKANPTNVDLQLLMCNVLFGLNRD
ADAAAVLREVLRTHPLHFTATHALASSLAERGQPAEVIELVKPLLHEFPH
DVSLSYLMAWANLELGDATESDRWMQIHLDARRALNRLFVELKKSTTGSQ
SRPDYLGIANEYFQYQWDKAEPALARAISNSPRSADAYRAMAKFSEMKGD
PGKAADFNKAAESLRNN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR039340Tfc4/TFIIIC-102/Sfc4
IPR013026TPR-contain_dom