mRNA_P-canaliculata_contig98762.23986.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98762.23986.1
Unique NamemRNA_P-canaliculata_contig98762.23986.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig98762.23986.1 vs. uniprot
Match: UPI0019190AAE (ATP-binding protein n=1 Tax=Rubrivivax sp. A210 TaxID=2772301 RepID=UPI0019190AAE)

HSP 1 Score: 110 bits (275), Expect = 2.680e-26
Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 LDNLLENSLRYTDAPGRIVISIEQNDQSICITINDTAPAPSMASLPHLFEPLYRTEDAGTYSHQGSGLGLAISEAIARSHDGKLEASSSALGGLQVSVTLP 303
            L NL+ENSLRYTDAPG+I I ++Q    + + + D+AP       P LFEPLYR + A    H GSGLGLAI EAIAR+H G+L AS+S LGGL+++VTLP
Sbjct:  378 LANLMENSLRYTDAPGQIRIGLQQAGDEVKLVVEDSAPGVPADQWPQLFEPLYRGDAARARLHGGSGLGLAICEAIARAHGGQLRASASTLGGLRITVTLP 478          
BLAST of mRNA_P-canaliculata_contig98762.23986.1 vs. uniprot
Match: A0A285NGT4_9HYPH (Histidine kinase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A285NGT4_9HYPH)

HSP 1 Score: 103 bits (257), Expect = 8.890e-24
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 LDNLLENSLRYTDAPGRIVISIEQNDQSICITINDTAPAPSMASLPHLFEPLYRTEDAGTYSHQGSGLGLAISEAIARSHDGKLEASSSALGGLQVSVTLP 303
            LDNL+ENS RYT +PG+I I++ + +    I I DTAP P+   LP LFE  YRTE +    H GSGLGLAI +AI  +H G + A++S LGGLQV ++LP
Sbjct:  397 LDNLIENSRRYTSSPGKIAITLGELNDGYQIIIADTAPCPTELQLPKLFERFYRTESSRNRQHGGSGLGLAICKAIVDAHSGDISATASNLGGLQVGISLP 497          
BLAST of mRNA_P-canaliculata_contig98762.23986.1 vs. uniprot
Match: A0A515EK04_9BURK (Histidine kinase n=1 Tax=Rhodoferax sediminis TaxID=2509614 RepID=A0A515EK04_9BURK)

HSP 1 Score: 101 bits (252), Expect = 1.580e-23
Identity = 55/102 (53.92%), Postives = 72/102 (70.59%), Query Frame = 1
Query:    1 LDNLLENSLRYTDAPGRIVISIEQNDQSICITINDTAPAPSMASLPHLFEPLYRTEDA-GTYSHQGSGLGLAISEAIARSHDGKLEASSSALGGLQVSVTLP 303
            L NLLENSLRYT APGRI I  + +  ++ +T+ D+AP  +   LP LFEPLYR + A G    QGSGLGL+I +AI R+H G ++AS+S LGGL V++ LP
Sbjct:  257 LGNLLENSLRYTHAPGRIRIRWQASATALTLTVEDSAPGVAAVHLPKLFEPLYRVDAARGRTGQQGSGLGLSIVQAIVRAHRGSVKASASELGGLAVTLVLP 358          
BLAST of mRNA_P-canaliculata_contig98762.23986.1 vs. uniprot
Match: UPI0015B18F9D (ATP-binding protein n=1 Tax=Rhodoferax aquaticus TaxID=2527691 RepID=UPI0015B18F9D)

HSP 1 Score: 101 bits (252), Expect = 4.580e-23
Identity = 55/102 (53.92%), Postives = 72/102 (70.59%), Query Frame = 1
Query:    1 LDNLLENSLRYTDAPGRIVISIEQNDQSICITINDTAPAPSMASLPHLFEPLYRTEDA-GTYSHQGSGLGLAISEAIARSHDGKLEASSSALGGLQVSVTLP 303
            L NLLENSLRYT APGRI I  + +  ++ +T+ D+AP  +   LP LFEPLYR + A G    QGSGLGL+I +AI R+H G ++AS+S LGGL V++ LP
Sbjct:  403 LGNLLENSLRYTHAPGRIRIRWQASATALTLTVEDSAPGVAAVHLPKLFEPLYRVDAARGRTGQQGSGLGLSIVQAIVRAHRGSVKASASELGGLAVTLVLP 504          
BLAST of mRNA_P-canaliculata_contig98762.23986.1 vs. uniprot
Match: A0A8B7N1B5_HYAAZ (Histidine kinase n=2 Tax=cellular organisms TaxID=131567 RepID=A0A8B7N1B5_HYAAZ)

HSP 1 Score: 99.4 bits (246), Expect = 7.460e-23
Identity = 52/101 (51.49%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    1 LDNLLENSLRYTDAPGRIVISIEQNDQSICITINDTAPAPSMASLPHLFEPLYRTEDAGTYSHQGSGLGLAISEAIARSHDGKLEASSSALGGLQVSVTLP 303
            L NLLENSLRYT+APG + + +      + + + D+AP    A LP LFEPLYR + A      GSGLGLAI   IA++H G++ AS+SALGGL + VTLP
Sbjct:  222 LSNLLENSLRYTEAPGHLTLRLSMAAGLVTVDVEDSAPGVPAAMLPLLFEPLYRGDTARAQQPGGSGLGLAICAVIAKAHGGQVSASASALGGLCIRVTLP 322          
BLAST of mRNA_P-canaliculata_contig98762.23986.1 vs. uniprot
Match: A0A411HIX1_9GAMM (Histidine kinase n=1 Tax=Pseudolysobacter antarcticus TaxID=2511995 RepID=A0A411HIX1_9GAMM)

HSP 1 Score: 100 bits (250), Expect = 8.220e-23
Identity = 52/101 (51.49%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    1 LDNLLENSLRYTDAPGRIVISIEQNDQSICITINDTAPAPSMASLPHLFEPLYRTEDAGTYSHQGSGLGLAISEAIARSHDGKLEASSSALGGLQVSVTLP 303
            LDNLL N+ RYTDAPGRI +++ +  + + ++I+DTAP    ASLP LFE LYR + +   +  G+GLGLAI  AI  +HDG++EAS+S LGGL++ + LP
Sbjct:  398 LDNLLANARRYTDAPGRIRLTLVEIGEVLQLSIDDTAPGVPPASLPLLFERLYRVDGSRNRTGGGAGLGLAICRAIVAAHDGQIEASASPLGGLRIDIRLP 498          
BLAST of mRNA_P-canaliculata_contig98762.23986.1 vs. uniprot
Match: UPI001F5B017A (ATP-binding protein n=1 Tax=Ectothiorhodospira shaposhnikovii TaxID=1054 RepID=UPI001F5B017A)

HSP 1 Score: 97.8 bits (242), Expect = 8.630e-23
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 LDNLLENSLRYTDAPGRIVISIEQNDQSICITINDTAPAPSMASLPHLFEPLYRTEDAGTYSHQGSGLGLAISEAIARSHDGKLEASSSALGGLQVSVTLP 303
            L+NLLEN+LRYTD  GR+ ++  Q D+ + IT++DTAP     +LP LFE L+R E + +  H G+GLGLA+   I   H G++ A+ S LGGL++SV LP
Sbjct:  157 LNNLLENTLRYTDPGGRLHVAARQKDRQLIITLDDTAPGVPADALPLLFEHLFRVEPSRSRRHGGAGLGLALCRRIVEGHGGRITAAPSPLGGLRISVCLP 257          
BLAST of mRNA_P-canaliculata_contig98762.23986.1 vs. uniprot
Match: A0A4P7RA68_9BURK (Histidine kinase n=1 Tax=Hydrogenophaga sp. PAMC20947 TaxID=2565558 RepID=A0A4P7RA68_9BURK)

HSP 1 Score: 100 bits (250), Expect = 8.650e-23
Identity = 51/101 (50.50%), Postives = 71/101 (70.30%), Query Frame = 1
Query:    1 LDNLLENSLRYTDAPGRIVISIEQNDQSICITINDTAPAPSMASLPHLFEPLYRTEDAGTYSHQGSGLGLAISEAIARSHDGKLEASSSALGGLQVSVTLP 303
            L NLL NSLRYTDAPGR+ + +  +D  + I ++D+AP  + A L  LF+PLYR + A +  + GSGLGLAI  AIA++H G++ A  S LGG+Q+ V+LP
Sbjct:  409 LSNLLHNSLRYTDAPGRVEVRLWASDGVVHIRLDDSAPGVAPADLARLFDPLYRADSARSRHNGGSGLGLAICAAIAKAHGGRITAKPSPLGGMQLQVSLP 509          
BLAST of mRNA_P-canaliculata_contig98762.23986.1 vs. uniprot
Match: A7BPZ4_9GAMM (Histidine kinase n=1 Tax=Beggiatoa sp. PS TaxID=422289 RepID=A7BPZ4_9GAMM)

HSP 1 Score: 93.6 bits (231), Expect = 9.170e-23
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 LDNLLENSLRYTDAPGRIVISIEQNDQSICITINDTAPAPSMASLPHLFEPLYRTEDAGTYSHQGSGLGLAISEAIARSHDGKLEASSSALGGLQVSVTLP 303
            + NLLENSLRYTD  GR++IS+EQ++++I +   D+AP     +L HLFE LYR E + + +  G+GLGL+I   I  +H G++ AS S LGGL V V LP
Sbjct:    1 MSNLLENSLRYTDNGGRLIISLEQSEKNINLLFEDSAPGVPEEALEHLFERLYRLEKSRSRALGGAGLGLSICRNIVTAHAGEISASPSKLGGLCVRVCLP 101          
BLAST of mRNA_P-canaliculata_contig98762.23986.1 vs. uniprot
Match: UPI001F0CEBAF (ATP-binding protein n=1 Tax=Kerstersia gyiorum TaxID=206506 RepID=UPI001F0CEBAF)

HSP 1 Score: 99.0 bits (245), Expect = 1.280e-22
Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    1 LDNLLENSLRYTDAPGRIVISIEQNDQSICITINDTAPAPSMASLPHLFEPLYRTEDAGTYSHQGSGLGLAISEAIARSHDGKLEASSSALGGLQVSVTLP 303
            L+NLLENS+RYTD  G + + +EQ D  I +T+ D+AP     +LPHLFE LYR E +   +H G+GLGLA+ E I  +H G++ +S S LGGL ++   P
Sbjct:  242 LNNLLENSVRYTDPGGLVRVRLEQADDEILLTVEDSAPGVPEEALPHLFERLYRVESSRNRNHGGAGLGLALCERIVHAHHGRITSSLSDLGGLSITAAFP 342          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98762.23986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019190AAE2.680e-2656.44ATP-binding protein n=1 Tax=Rubrivivax sp. A210 Ta... [more]
A0A285NGT4_9HYPH8.890e-2452.48Histidine kinase n=2 Tax=Hyphomicrobiales TaxID=35... [more]
A0A515EK04_9BURK1.580e-2353.92Histidine kinase n=1 Tax=Rhodoferax sediminis TaxI... [more]
UPI0015B18F9D4.580e-2353.92ATP-binding protein n=1 Tax=Rhodoferax aquaticus T... [more]
A0A8B7N1B5_HYAAZ7.460e-2351.49Histidine kinase n=2 Tax=cellular organisms TaxID=... [more]
A0A411HIX1_9GAMM8.220e-2351.49Histidine kinase n=1 Tax=Pseudolysobacter antarcti... [more]
UPI001F5B017A8.630e-2348.51ATP-binding protein n=1 Tax=Ectothiorhodospira sha... [more]
A0A4P7RA68_9BURK8.650e-2350.50Histidine kinase n=1 Tax=Hydrogenophaga sp. PAMC20... [more]
A7BPZ4_9GAMM9.170e-2349.50Histidine kinase n=1 Tax=Beggiatoa sp. PS TaxID=42... [more]
UPI001F0CEBAF1.280e-2247.52ATP-binding protein n=1 Tax=Kerstersia gyiorum Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98762contigP-canaliculata_contig98762:619..921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score100.9
Seed ortholog evalue3.6e-19
Seed eggNOG ortholog519989.ECTPHS_01259
Preferred namebaeS
KEGG koko:K07642
KEGG Pathwayko02020,map02020
KEGG ModuleM00450,M00645,M00646,M00648
EggNOG free text desc.Histidine kinase
EggNOG OGs1QU7C@1224,1T22Y@1236,COG5002@1,COG5002@2
EC2.7.13.3
COG Functional cat.T
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02022
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817349.012252-CDS-P-canaliculata_contig98762:618..9211622817349.012252-CDS-P-canaliculata_contig98762:618..921Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98762 619..921 -
1693495239.19026-CDS-P-canaliculata_contig98762:618..9211693495239.19026-CDS-P-canaliculata_contig98762:618..921Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98762 619..921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98762.23986.1prot_P-canaliculata_contig98762.23986.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98762 619..921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98762.23986.1

>prot_P-canaliculata_contig98762.23986.1 ID=prot_P-canaliculata_contig98762.23986.1|Name=mRNA_P-canaliculata_contig98762.23986.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=101bp
LDNLLENSLRYTDAPGRIVISIEQNDQSICITINDTAPAPSMASLPHLFE
PLYRTEDAGTYSHQGSGLGLAISEAIARSHDGKLEASSSALGGLQVSVTL
P
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mRNA from alignment at P-canaliculata_contig98762:619..921-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98762.23986.1 ID=mRNA_P-canaliculata_contig98762.23986.1|Name=mRNA_P-canaliculata_contig98762.23986.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at P-canaliculata_contig98762:619..921- (Pelvetia canaliculata dioecious)
CTGGACAACCTGCTGGAAAACAGCCTGAGATACACCGATGCACCTGGCCG TATTGTGATATCCATAGAACAGAACGATCAATCCATTTGCATTACTATAA ACGATACTGCCCCGGCTCCATCGATGGCATCGCTACCCCATCTGTTTGAA CCTCTTTATCGCACAGAGGATGCCGGCACTTACAGTCACCAGGGAAGCGG ACTGGGTCTTGCCATTAGCGAAGCCATTGCGCGCAGTCACGACGGTAAAC TTGAAGCCAGTTCGTCTGCGCTGGGTGGCTTGCAAGTGAGCGTGACGTTG CCG
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Coding sequence (CDS) from alignment at P-canaliculata_contig98762:619..921-

>mRNA_P-canaliculata_contig98762.23986.1 ID=mRNA_P-canaliculata_contig98762.23986.1|Name=mRNA_P-canaliculata_contig98762.23986.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at P-canaliculata_contig98762:619..921- (Pelvetia canaliculata dioecious)
CTGGACAACCTGCTGGAAAACAGCCTGAGATACACCGATGCACCTGGCCG
TATTGTGATATCCATAGAACAGAACGATCAATCCATTTGCATTACTATAA
ACGATACTGCCCCGGCTCCATCGATGGCATCGCTACCCCATCTGTTTGAA
CCTCTTTATCGCACAGAGGATGCCGGCACTTACAGTCACCAGGGAAGCGG
ACTGGGTCTTGCCATTAGCGAAGCCATTGCGCGCAGTCACGACGGTAAAC
TTGAAGCCAGTTCGTCTGCGCTGGGTGGCTTGCAAGTGAGCGTGACGTTG
CCGCTGGACAACCTGCTGGAAAACAGCCTGAGATACACCGATGCACCTGG
CCGTATTGTGATATCCATAGAACAGAACGATCAATCCATTTGCATTACTA
TAAACGATACTGCCCCGGCTCCATCGATGGCATCGCTACCCCATCTGTTT
GAACCTCTTTATCGCACAGAGGATGCCGGCACTTACAGTCACCAGGGAAG
CGGACTGGGTCTTGCCATTAGCGAAGCCATTGCGCGCAGTCACGACGGTA
AACTTGAAGCCAGTTCGTCTGCGCTGGGTGGCTTGCAAGTGAGCGTGACG
TTGCCG
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