mRNA_P-canaliculata_contig9849.23955.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9849.23955.1
Unique NamemRNA_P-canaliculata_contig9849.23955.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9849.23955.1 vs. uniprot
Match: A0A6H5J855_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J855_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.300e-8
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 VIEEGKHDELLERKGAYANLMTTQVQSFSTIAN 99
            VIEEGKHDELLER+GAY NLM+TQV+SFSTI +
Sbjct:  181 VIEEGKHDELLEREGAYYNLMSTQVRSFSTIGD 213
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9849.23955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J855_9PHAE1.300e-881.82ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9849contigP-canaliculata_contig9849:11355..11456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.1703897-CDS-P-canaliculata_contig9849:11354..114561622817346.1703897-CDS-P-canaliculata_contig9849:11354..11456Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9849 11355..11456 +
1693495237.3339548-CDS-P-canaliculata_contig9849:11354..114561693495237.3339548-CDS-P-canaliculata_contig9849:11354..11456Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9849 11355..11456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9849.23955.1prot_P-canaliculata_contig9849.23955.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9849 11355..11456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9849.23955.1

>prot_P-canaliculata_contig9849.23955.1 ID=prot_P-canaliculata_contig9849.23955.1|Name=mRNA_P-canaliculata_contig9849.23955.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=34bp
VIEEGKHDELLERKGAYANLMTTQVQSFSTIAN*
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mRNA from alignment at P-canaliculata_contig9849:11355..11456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9849.23955.1 ID=mRNA_P-canaliculata_contig9849.23955.1|Name=mRNA_P-canaliculata_contig9849.23955.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=102bp|location=Sequence derived from alignment at P-canaliculata_contig9849:11355..11456+ (Pelvetia canaliculata dioecious)
GTGATCGAGGAAGGCAAGCACGACGAGCTGTTGGAGCGCAAGGGCGCCTA
CGCGAACCTCATGACCACTCAGGTGCAATCGTTCTCCACGATCGCCAACT
AA
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Coding sequence (CDS) from alignment at P-canaliculata_contig9849:11355..11456+

>mRNA_P-canaliculata_contig9849.23955.1 ID=mRNA_P-canaliculata_contig9849.23955.1|Name=mRNA_P-canaliculata_contig9849.23955.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at P-canaliculata_contig9849:11355..11456+ (Pelvetia canaliculata dioecious)
GTGATCGAGGAAGGCAAGCACGACGAGCTGTTGGAGCGCAAGGGCGCCTA
CGCGAACCTCATGACCACTCAGGTGCAATCGTTCTCCACGATCGCCAACT
AAGTGATCGAGGAAGGCAAGCACGACGAGCTGTTGGAGCGCAAGGGCGCC
TACGCGAACCTCATGACCACTCAGGTGCAATCGTTCTCCACGATCGCCAA
CTAA
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