prot_P-canaliculata_contig984.23942.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig984.23942.1
Unique Nameprot_P-canaliculata_contig984.23942.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length667
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig984.23942.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 284..327
NoneNo IPR availableCOILSCoilCoilcoord: 217..265
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 87..148
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 77..191
e-value: 2.2E-8
score: 35.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig984contigP-canaliculata_contig984:15236..24529 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig984.23942.1mRNA_P-canaliculata_contig984.23942.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig984 15070..24529 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig984.23942.1 ID=prot_P-canaliculata_contig984.23942.1|Name=mRNA_P-canaliculata_contig984.23942.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=667bp
MEGTGKGKGKFTGTGLCDSGYSVASSSGGEGGGSSSSGVGSKGNESDGVG
RRGNWLDKIGHVGWEPGEGIVINGDRVVSVGNEKNMVRLVECTICKEALV
EQDTDPCVRAPCCKAIAHKSCVEEWLRRESRCFVCPHIINTRNGRAAYFA
NKLSADDIAAESTQEIERKIADPGDLKEEFQRAREKFLQEKQRPYDEAFG
EFLAKEISGGEGVADIMSQQEKALAEIRANLQESLAADEAFARKLEEEER
EREAAAALRASEKTEFRANLQGSLAADEAFARKLEEEEREREAAAALRAR
REVEKSERAARELAEMFEREAAEEEKRAAAEVTLETNKERESEGECERLE
KSGERGSKLRRASPKGARFQGDRGSCSSGEGNVVKRPERMAQGHGASPSN
RARGSVGDVSGRAVKSKGVGSRQSDWRDGREGSSESGDRRAGERGRGGGR
LKSGGGRPAPSKHSENCSDFDEEEEEEDEEDVDDEWVEAKETRGSSPHSS
KKRRFSNCGGRSNTNTCTSVPFRSNRTSPGGKRGGDINDVTSGARRQGAG
ADAEVCAGADAGAGTGGRGKNEIPAASSQRRAARHPSPTGGRAGIAKSGG
GEDGVDGGYQRPVSLDHAMDDAAPGDAKDPLRDSLKRATNNTRVFRAAAD
AEDALAPGRQLEASDAR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD