mRNA_P-canaliculata_contig98204.23920.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98204.23920.1
Unique NamemRNA_P-canaliculata_contig98204.23920.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98204.23920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98204contigP-canaliculata_contig98204:749..1069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue5.6e-07
Seed eggNOG ortholog1122612.AUBA01000003_gene1465
Preferred namevioA
KEGG rclassRC00006,RC00011,RC00013,RC00781,RC02518,RC02873
KEGG koko:K00384,ko:K03388,ko:K13308,ko:K20429
KEGG ReactionR02016,R02773,R03596,R04540,R09372,R11928,R11931,R11943,R11944
KEGG Pathwayko00450,ko00523,ko00680,ko01100,ko01120,ko01130,ko01200,map00450,map00523,map00680,map01100,map01120,map01130,map01200
KEGG ModuleM00356,M00357,M00563,M00567,M00797
GOsGO:0005575,GO:0005576,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009607,GO:0009987,GO:0009991,GO:0010106,GO:0019725,GO:0030003,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042592,GO:0042594,GO:0043207,GO:0044403,GO:0044419,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071496,GO:0075136,GO:0098771
EggNOG free text desc.DegT/DnrJ/EryC1/StrS aminotransferase family
EggNOG OGs1MUPN@1224,2JZWG@204457,2U51A@28211,COG0399@1,COG0399@2,COG2072@1,COG2072@2
EC1.8.1.9,1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6,2.6.1.33
COG Functional cat.M
Best tax levelSphingomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817343.8915157-UTR-P-canaliculata_contig98204:748..7511622817343.8915157-UTR-P-canaliculata_contig98204:748..751Pelvetia canaliculata dioeciousUTRP-canaliculata_contig98204 749..751 +
1693495236.0339835-UTR-P-canaliculata_contig98204:748..7511693495236.0339835-UTR-P-canaliculata_contig98204:748..751Pelvetia canaliculata dioeciousUTRP-canaliculata_contig98204 749..751 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817343.9025717-CDS-P-canaliculata_contig98204:751..10691622817343.9025717-CDS-P-canaliculata_contig98204:751..1069Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98204 752..1069 +
1693495236.0455937-CDS-P-canaliculata_contig98204:751..10691693495236.0455937-CDS-P-canaliculata_contig98204:751..1069Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98204 752..1069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98204.23920.1prot_P-canaliculata_contig98204.23920.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98204 752..1069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98204.23920.1

>prot_P-canaliculata_contig98204.23920.1 ID=prot_P-canaliculata_contig98204.23920.1|Name=mRNA_P-canaliculata_contig98204.23920.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=106bp
MFDVLIIGSGPAGTGLLSCLLNRAKNDDTKALKICLIDRLPADQTGLIRD
YTIASDTRAEKFLTCLEDLPQTIKENAELCQLTEALRSYGPIAAPLCLVG
DFYRVM
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mRNA from alignment at P-canaliculata_contig98204:749..1069+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98204.23920.1 ID=mRNA_P-canaliculata_contig98204.23920.1|Name=mRNA_P-canaliculata_contig98204.23920.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at P-canaliculata_contig98204:749..1069+ (Pelvetia canaliculata dioecious)
CGCATGTTCGACGTTTTGATCATTGGGAGTGGCCCCGCCGGAACAGGCCT
TCTTTCTTGCTTGCTCAATCGCGCAAAAAATGACGACACGAAGGCTCTAA
AAATTTGCCTCATTGATCGTCTTCCCGCAGACCAGACGGGCCTAATCCGG
GACTACACCATCGCATCCGACACCCGGGCAGAGAAATTCCTGACCTGCCT
CGAAGACTTGCCCCAAACGATAAAAGAGAACGCGGAGTTATGCCAGTTGA
CGGAGGCGTTACGGAGCTATGGCCCAATAGCTGCGCCGCTTTGCCTTGTC
GGGGATTTTTATCGGGTGATG
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Coding sequence (CDS) from alignment at P-canaliculata_contig98204:749..1069+

>mRNA_P-canaliculata_contig98204.23920.1 ID=mRNA_P-canaliculata_contig98204.23920.1|Name=mRNA_P-canaliculata_contig98204.23920.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at P-canaliculata_contig98204:749..1069+ (Pelvetia canaliculata dioecious)
ATGTTCGACGTTTTGATCATTGGGAGTGGCCCCGCCGGAACAGGCCTTCT
TTCTTGCTTGCTCAATCGCGCAAAAAATGACGACACGAAGGCTCTAAAAA
TTTGCCTCATTGATCGTCTTCCCGCAGACCAGACGGGCCTAATCCGGGAC
TACACCATCGCATCCGACACCCGGGCAGAGAAATTCCTGACCTGCCTCGA
AGACTTGCCCCAAACGATAAAAGAGAACGCGGAGTTATGCCAGTTGACGG
AGGCGTTACGGAGCTATGGCCCAATAGCTGCGCCGCTTTGCCTTGTCGGG
GATTTTTATCGGGTGATGATGTTCGACGTTTTGATCATTGGGAGTGGCCC
CGCCGGAACAGGCCTTCTTTCTTGCTTGCTCAATCGCGCAAAAAATGACG
ACACGAAGGCTCTAAAAATTTGCCTCATTGATCGTCTTCCCGCAGACCAG
ACGGGCCTAATCCGGGACTACACCATCGCATCCGACACCCGGGCAGAGAA
ATTCCTGACCTGCCTCGAAGACTTGCCCCAAACGATAAAAGAGAACGCGG
AGTTATGCCAGTTGACGGAGGCGTTACGGAGCTATGGCCCAATAGCTGCG
CCGCTTTGCCTTGTCGGGGATTTTTATCGGGTGATG
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