prot_P-canaliculata_contig98051.23902.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig98051.23902.1
Unique Nameprot_P-canaliculata_contig98051.23902.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length234
Homology
BLAST of mRNA_P-canaliculata_contig98051.23902.1 vs. uniprot
Match: A0A518DNM9_9BACT (Uncharacterized protein n=1 Tax=Lignipirellula cremea TaxID=2528010 RepID=A0A518DNM9_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 1.210e-10
Identity = 53/170 (31.18%), Postives = 81/170 (47.65%), Query Frame = 0
Query:   63 VTSFLGAGIFQLLLKVGRGEPVKVEDMFSVVDRWLPVIGYTISLYLVILVPVFVIGIVIAIVTQANGGPLPTGVIVGLGFSIIFIASAVMSL-VWPGYFLVVDRKAKVFEAFGLGFRIAKKNVLQSMALFSIAGLISWAGLILFCVGFIFSFPLGMLVIACAYLVMSGQV 231
            V  FLG G   + LKV RG      D+ +   +   V+G T+   ++++                            L FS  F+    +    WP YFL+VD+KA VF++F     I K N+   + L  ++ LI+ AGL+   VGF+F+ PL  ++ A AYL+MSGQ+
Sbjct:  229 VKVFLGVGQTLIALKVARGRQAYFTDVLTGASQTTAVVGATLIATILLM----------------------------LAFSACFVPGLFLCWNYWPFYFLIVDKKAGVFDSFTTAREITKNNLGSIILLCFVSALIALAGLLGCLVGFVFAAPLLTVLWATAYLMMSGQL 370          
BLAST of mRNA_P-canaliculata_contig98051.23902.1 vs. uniprot
Match: A0A832MAN1_9BACT (GPDPase_memb domain-containing protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A832MAN1_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 4.120e-6
Identity = 51/230 (22.17%), Postives = 111/230 (48.26%), Query Frame = 0
Query:    9 VGHAFSAYRRNFGIVFGCSLLFMMIMFGLGFVGELLNNAMGDSGKAVGGLLNLVVTSFLGAGIFQLLLKVGRGEPVKVEDMFSVVDRWLPVIGYTIS------LYLVILVPVFVIGIVIAIVTQ-ANGGPLPTGVIVGLGFSIIFIASAV-MSLVWPGYF-LVVDRKAKVFEAFGLGFRIAKKNVLQSMALFSIAGLISWAGLILFCVGFIFSFPLGMLVIACAYLVMSG 229
            +   +   ++NF I+F  SL++++I F +G +G +           V  + N ++   L  G+F + ++V RG+P +  D+F+   +  P +   +       L  + ++P  ++G+V  + +   N  P P   I  +  +++ +   + +++ W     LV+D+    + A    +R+  K+  +  A+  + G+ +  G++L CVG +FS P+ + +I   Y  M G
Sbjct:   91 ISRGWELLQKNFSILFVASLIYLLIEFLIGLLGSI------PFVGPVFSVANAIIVGPLLGGLFWVFIQVNRGKPARPGDVFAGFGK--PFLNLLLGQIVPSLLAALCMLPAVIVGLVTLLPSIFKNQEPTPAMFIPTICVALLCVVPMIWLNVNWVFTLPLVIDKGIDFWTAMRASWRMVHKHWWRVFAVLLLVGIFNALGILLCCVGVLFSVPISLGMIVHTYETMFG 312          
BLAST of mRNA_P-canaliculata_contig98051.23902.1 vs. uniprot
Match: A0A2E7NKU4_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7NKU4_9PLAN)

HSP 1 Score: 55.8 bits (133), Expect = 1.520e-5
Identity = 45/177 (25.42%), Postives = 84/177 (47.46%), Query Frame = 0
Query:   56 GGLLNLVVTSFLGAGIFQLLLKVGRGEPVKVEDMFSVVDRWLPVIGYTISLYLVILVPVFVIGIVIAIVTQANGGPLPTGVIVGLGFSIIFIASAVMSLVWPGY-FLVVDRKAK-VFEAFGLGFRIAKKNVLQSMALFSIAGLISWAGLILFCVGFIFSFPLGMLVIACAYLVMSGQ 230
            G +L+L++ +++  G+   LLK+ RGE  ++ D+F     +  ++  TI                              G++VGLG     I   + +L++  Y +++VDR    + +A     ++   + LQ + +    G I+  G++  CVG+IF+ P   L++A AYL M+GQ
Sbjct:  187 GNILSLLLAAYMNGGLMLFLLKLARGERAEIADIFRGGRYFGRMLLCTICF----------------------------GIMVGLGCLACVIPGVIFALMYGVYQWVLVDRDPSGLTDALSQSKQVTDGHKLQLLVIGFAVGCINIVGVLACCVGYIFTVPFSNLIMAVAYLRMTGQ 335          
BLAST of mRNA_P-canaliculata_contig98051.23902.1 vs. uniprot
Match: A0A7C1JYF1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1JYF1_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 2.680e-5
Identity = 52/238 (21.85%), Postives = 98/238 (41.18%), Query Frame = 0
Query:    4 EIGFIVGHAFSAYRRNFGIVFGCSLLFMMIMFGLGFVGELLNNAM-----------GDSGKAVGGLLNLVVTSFLGAGIFQLLLKVGRGEPVKVEDMFSVVDRWLPVIGYTISLYLVILVPVFVIGIVIAIVTQANGGPLPTGVIVGLGFSIIFIASAV-MSLVWPGYFLVVDRKAKVFEAFGLGFRIAKKNVLQSMALFSIAGLISWAGLILFCVGFIFSFPLGMLVIACAYLVMSG 229
            ++G ++  A + Y+   G+    S + M+++    F   L  + +              G A+     +VV +   A   ++ LK+ RGEP  + D+F + +      G  +  Y+  ++ V+                        LG S+  +   + M+L +P  FL  DR+A V + F     I + N L    +  +AGLI  AGL+   +G + + P  ++     YL ++G
Sbjct:  137 DLGDVLSTALNIYKSQLGLCVAASAIMMVVIIVASFAIALFLSMLPRFXXXXXXXXXXQGPAI-----VVVLAACLAQCTRMFLKIARGEPASINDLFQITEDG----GRAVLTYIAFMLMVY------------------------LGMSLCVVPGWILMTLFFPALFLAFDREASVVDIFTEALAITEGNRLMIFVVLLVAGLIGPAGLLACGIGVLLTMPFALMCQTVLYLRLTG 341          
BLAST of mRNA_P-canaliculata_contig98051.23902.1 vs. uniprot
Match: UPI001A142A44 (Beta-carotene 15,15'-monooxygenase n=1 Tax=Chryseobacterium sp. TaxID=1871047 RepID=UPI001A142A44)

HSP 1 Score: 53.1 bits (126), Expect = 7.890e-5
Identity = 68/253 (26.88%), Postives = 104/253 (41.11%), Query Frame = 0
Query:    8 IVGHAFSAYRRNFGIVFGCSLLFMMIMFGLGFVGELLNN--------AMGDSGK---------------AVGGLLNLVVTSFLGAGIFQLLLKVGRGEPVKVEDMFSVVDRWLPVIGYT-----ISLYLVILVPVFVIGIVIAIVTQANGGPLPTGVIVGLGFSIIFIASAVMSLVWPGYFLVVDRKAKVFEAFGLGFRIAKKNVLQSMALFSIAGLISWAGLILFCVGFIFSFPLGMLVIACAYLVMSGQVR 232
            I+ H+F  Y++        ++L  +I +GL  + +L++         AM   G                 + GLL+L +  F  AG+  +  KV   +PV+V D+F         IGY      + LY +I   +FVI I + I        LP          +IFI    M L   G  +V    A   +A    + I K N +  + +  +A LIS +GLIL C+G IF+ P     I  AY    G  +
Sbjct:   21 IIAHSFEIYKKGLAYAILMTVLVSVISYGLSLIAKLISGFDPISASEAMRSGGGHFRRIFLMPGYSSFLGITGLLSLALFPFK-AGLLYIFNKVNFNQPVEVSDLF---------IGYKQNTAQLLLYGLIYNIIFVISISLCI--------LP----------VIFI----MPLFLFGLPIVFFENASAADALKKSYEIVKNNYISILWIAILAFLISMSGLILCCIGVIFTAPFMYAAIYSAYCAYFGAPK 241          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98051.23902.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A518DNM9_9BACT1.210e-1031.18Uncharacterized protein n=1 Tax=Lignipirellula cre... [more]
A0A832MAN1_9BACT4.120e-622.17GPDPase_memb domain-containing protein n=1 Tax=Ver... [more]
A0A2E7NKU4_9PLAN1.520e-525.42Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A7C1JYF1_9BACT2.680e-521.85Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
UPI001A142A447.890e-526.88Beta-carotene 15,15'-monooxygenase n=1 Tax=Chryseo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 209..227
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 41..54
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 228..233
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 125..135
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 136..163
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..76
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 164..183
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 184..203
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 204..208
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 77..95
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..124
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..40
NoneNo IPR availableTMHMMTMhelixcoord: 20..39
NoneNo IPR availableTMHMMTMhelixcoord: 184..203
NoneNo IPR availableTMHMMTMhelixcoord: 141..163
NoneNo IPR availableTMHMMTMhelixcoord: 54..76
NoneNo IPR availableTMHMMTMhelixcoord: 207..229
NoneNo IPR availableTMHMMTMhelixcoord: 104..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98051contigP-canaliculata_contig98051:72..773 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98051.23902.1mRNA_P-canaliculata_contig98051.23902.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig98051 72..773 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig98051.23902.1 ID=prot_P-canaliculata_contig98051.23902.1|Name=mRNA_P-canaliculata_contig98051.23902.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=234bp
TTGEIGFIVGHAFSAYRRNFGIVFGCSLLFMMIMFGLGFVGELLNNAMGD
SGKAVGGLLNLVVTSFLGAGIFQLLLKVGRGEPVKVEDMFSVVDRWLPVI
GYTISLYLVILVPVFVIGIVIAIVTQANGGPLPTGVIVGLGFSIIFIASA
VMSLVWPGYFLVVDRKAKVFEAFGLGFRIAKKNVLQSMALFSIAGLISWA
GLILFCVGFIFSFPLGMLVIACAYLVMSGQVRQ*
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