prot_P-canaliculata_contig9801.23897.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9801.23897.1
Unique Nameprot_P-canaliculata_contig9801.23897.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length49
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9801.23897.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 6..49
e-value: 2.3E-6
score: 27.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..49
e-value: 2.3E-12
score: 47.8
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 1..49
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 1..49
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 1..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9801contigP-canaliculata_contig9801:4363..11690 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9801.23897.1mRNA_P-canaliculata_contig9801.23897.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9801 4363..11690 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9801.23897.1 ID=prot_P-canaliculata_contig9801.23897.1|Name=mRNA_P-canaliculata_contig9801.23897.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=49bp
LSGSIPKELAQLGALKKLHLSYNKLEGSIPKELAQLGALEGLFLYSNEL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf