mRNA_P-canaliculata_contig9801.23897.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9801.23897.1
Unique NamemRNA_P-canaliculata_contig9801.23897.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9801.23897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9801contigP-canaliculata_contig9801:4363..11690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817342.2614763-CDS-P-canaliculata_contig9801:4362..44411622817342.2614763-CDS-P-canaliculata_contig9801:4362..4441Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9801 4363..4441 +
1693495234.9521298-CDS-P-canaliculata_contig9801:4362..44411693495234.9521298-CDS-P-canaliculata_contig9801:4362..4441Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9801 4363..4441 +
1622817342.2798781-CDS-P-canaliculata_contig9801:11622..116901622817342.2798781-CDS-P-canaliculata_contig9801:11622..11690Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9801 11623..11690 +
1693495234.9642024-CDS-P-canaliculata_contig9801:11622..116901693495234.9642024-CDS-P-canaliculata_contig9801:11622..11690Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9801 11623..11690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9801.23897.1prot_P-canaliculata_contig9801.23897.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9801 4363..11690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9801.23897.1

>prot_P-canaliculata_contig9801.23897.1 ID=prot_P-canaliculata_contig9801.23897.1|Name=mRNA_P-canaliculata_contig9801.23897.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=49bp
LSGSIPKELAQLGALKKLHLSYNKLEGSIPKELAQLGALEGLFLYSNEL
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mRNA from alignment at P-canaliculata_contig9801:4363..11690+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9801.23897.1 ID=mRNA_P-canaliculata_contig9801.23897.1|Name=mRNA_P-canaliculata_contig9801.23897.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=7328bp|location=Sequence derived from alignment at P-canaliculata_contig9801:4363..11690+ (Pelvetia canaliculata dioecious)
TTGTCAGGTTCGATACCGAAAGAGCTGGCGCAACTTGGCGCTCTTAAGAA
ACTTCACCTCTCCTACAACAAGCTGGAAGGTGAGAGAGAAGCATCGAGGC
TATTCGTAGTCAATATATTGCAAATATATATATAAGTTGTATTGAACGAT
TATTACCTTGGCGTGTGGGTGTATAACTAAGCGCTTTGGATTGGGTCATT
TTACTTACGCTTTGAAAACATTCTTGAGACGGTTTGATGACACGAAAAAT
TGGTTGGATTTTATTTCTTCTGTGGGTCAAAAAGATACGCGTTCTCGGAA
AAAAAGTCCGTTTTCATTTTCACCAATAATTTGTCAATATTAATAGCAAT
CGACTTGTACTATAGTCAACACTGTACTCGCAGAAAGATATTTGGCAACC
ACGCGTCAAAGAGTGTGAGATCGATTCATTTTTTGTCAAATCGCTGAAAG
CTACTGGTACAAGACCCATAGAGTAATGCATTCCGACCGTACCAACGCTA
TTTCTCGCTCTGCTACTTTACTAATGGCACCCTGAAGGACTTATCCGGCT
TTGACATTCAAATTGTTAGCTGAAAGTCGGGTTTAGATGTCTTTCGTCCA
CGAGGTATTTTCCATATACTACATTGACTGAAGACAAACACTCTATGGGC
CAAGTTTGAACCAAAAAATAACTTCAAAACCACGTTTCCGTAGTGAAGCT
GAGGTGGGACCTGGGACTTGTAGGATTGTGTGACGCTTCCGGTAAATTGG
TGTATTTCGCAGGTTATGACGTGTCAAACCAATTCCACCCTCGAGGGGCT
GTACAACCGGCTGTTTGCTCGACCCAGCTGGTTGTTTAACAAGCGGTGGC
AGCTTGGTTGCGTCATATCCTGAAATACTCGCAACGCCCCAGACAGTAGA
TGCTGTAGTTCGTACCATGAGGGCTTTGTCGTGACGCGAGTATGATATGT
TGCAGTTGTGCTCGTCTGGTTGCGCCTAACTAGGATTTTGTCGCGATTTC
GATTATAAAATTTGGTTAGATATCATTTCCTCTGGTGGCCAAATAGAAGC
TTGCTTTCGAAAAGAAACTCTGTCTATTCCCAATCCGAGCTTCAACTCTC
ATAAAGACATAGGATTCTGAACACAGAAGCCATCGGTAAGTGATGTGGCT
GCCCTGAAAGTACGCCTTGACATGCCACACTGTCACTGGAAATTGAAGCA
CGTCGCAATATTTCCTTTCACGTTGTGCCATATAAACCAGTCTCGTGAAC
TGTACCTGCGGGGAGACTGCGTCGACCTTATCCGTCTGTCCGGCCTAGCC
TCTAGGGCCACAGTTCCATCGCCACACTTCTTTACTATATTTTATTCCTG
GCGATATCCGAAACGCCTACTACCCTTTCTTTCTCATGGCCTCACCCTCC
CGCTCGTAGCGACCCTAAATAATCAGCTTAGCTTAGTTCACCCAACAAAC
CCAGGCACAGGATCTTTGATGTGGATCGATGGAAAATAAAGGTATCTATA
CACACACTTGCATGTCATCTGACGACGCCAGAAGGATATTGTTAACGTAA
ACAGAAACCTCCTTCCTCACCCTACCTAAAAACCTCCGATGACAGCTTAC
ATCCAACAGCTATAATTTACAGTGCCGTCAAAACAAAACAAAAACCCGGA
AATTTCGGACGACTTTTTTCCCACAATCGGTTCTACCTATTCTCTCTCCC
TCGCCAACCCCTCGTCCTCACTTCTATCGGTAGTAATCGGATTCCCCCAA
AATCATCCACGTATCGCCCGACGTTCCGTCAACCGTCCCGCAGCACTTTT
GAGGAGGCCACGTCGGACGTTCCTTGCCCCTGACAAAAACAGTCTCCTGA
AGTGCCCAGTTGTCGAAGTATCCACTTCACAGTATAAGGATATCAAGAAT
GATCTAGTCAAAGGCCCACTAGATAGACGTACCGTAGTGATCTATGTTGG
TATATCCGTGCGAAGTATATGACATAAGCGTACCTAACCACAACGGCTTG
GTCCCATCATACGATGCTTGCTGTAAGCCCGGGGCTTCCCTCCCAGGAAA
GAATGTCACCGCCTTGTATGGTATTTGGACCTCAATGATTTATCGATGCC
ATCAAACCGGTAATGTAATCTACACAAGCAGTACCCTTAGGTTTTATCGA
AAAGGTGACGCAGCGTACCATTTAAGTATTTTGCGATATTTGGGAAGCCA
GACTCTCTTTTGAGTCTTACGCTTACTTCCTACATATGTATCTCCCTGTT
GCTTGTCAGGTTCGATACCGACAGAGCTGGCGCAACTTGGCGCTCTTGAG
GTACTTCACCTCTCCAACAACAAGCTGGAGGGTGAGAGAGAAGCATCGAG
GCTATTCGAAGTCGAAATATTGCAAATATATATAAGTTGCATTGAATGAT
TATTACATTGGCGTGTGGTTGTATAACTAAGCGCTTTGGATTGGGTCATT
TACACACGCATTGAAAACGTTCTTGAGACGGTTTGATGACATGAAAAATT
GGTTGGATTTTATTTCTTCTGTGGTTCAAAAAAATACGTGTTCTCGGACA
AAAAGTTCGTTCTCTAATTTACCAAGAATTTGTTGATATTTATAGGAATC
GACTTGTTGTACCATAGACAACGCTGTACTCGCAGAAAGATACTCGGCAA
CCACGCATCAAAGCGTGTCAGATCGATACATTTATAGTCAAATCGCTGAG
AGCTACTGGTACAAGACCCAAACAGTAATGCAATCGTACCGCACCAACGC
TATTTCTCACTCTGCTGCTTTACTATTGGCACCCTGAAGGACTTATCCGA
CTTTGACACTCAAATTGTTAGCTGAAAGTCGTGTTTAGATGTCTTTCGTC
CACGAGGTCTTTTCCATATACTACATGGTCTGAAGGCAAACACTCTATGG
GCCAGGTTTGAACCAAAATTTAACTTCAGAACCACGTTTCCGTAGTGAAG
CTGGGGTGGGAACTGAGACTTGTAGCGTTGTGTAACGCTTCGGGTAAATT
GGTATATTTCGCGCGATATGACGTGTCACACCTATTCCACCCTCGAGGGG
CGGTACGAACGGGCTGTCCACTCGACTCAGCTGGTTGGTTCACAAGCGGT
GGCAGCTTGGCTGTGTAATATCCTGAAATACTCGCAGCGCCCCAGACAGT
AGAGGCTGTAGTTCGTACCATGAGGGCTTTGTCGTGACGCGAGTATGATA
TGTTGCAGTTGTGCTCGTCTGGTTGCGCCTAACTAGGATTTCGTCGCGAT
TTCGATTATAAAATTTGGTTAGATTTCATTTCCTCTGGTGGCCAAATAGA
AGCTTGCCTTCGAAAAGAAACTCTGTCTATTCCCAATCCGAGCTTCAACT
CTCATAACGACATAGGATTCTGAACACAGAAGCCATCGGTAAGTAATGCG
GCTGCCCTGGAAGTACGCCTTGACATGCCCCACTGTCACTGGAAATTGAA
GCACGTCGCAATATTTCCTTTCACGTTGTGCCATATATACCAGTCTCGTG
AACTGTACCTGCGAGGAGACTGCGTCGACCTTATCCGTATGTCTGGCATA
GCTACTAGGGCCACAGTGCCATCGCCACACTTCTTTACTATATTTTATTC
CTGGCGATATCCGAAACGCCTACTACCCTTTCTTTCTCATGGCCTCACCC
TCCCGCTCGTAGCGACACTAAATAATCAGCTTAGCTTAGTTAACCCAACA
AACCCAGGCACAGGATCGTTGATGTGGATCAATGGAAAATAAAGGTATCT
ATACACACACTTGCATGCCAACTGACGACGCCAGAAGGATATTGTTAACG
TAGACAGAAATCTCCTTCCTCACCCTACCTAAAAACCTCCGATGACTACT
TACATCCATCAGCTATCATTTACAGTGCCGTCAAAACAAAACGAAAAACT
GGAAATTTCGGACGACTTTTTTCCCACAATCGGTTCTACCTATTCTCTTT
CCCTCGCCAACCCCTCGTCCTCACTTCTATCGGTAGTAGTCGAATTCCTC
CAAAATCATCCACGTATCGCCCCACGTTCCGTCAATCATCCCGCAGCACT
TTTGAGGAGGCCACGTCGGATGTTTCTTGCCCCTGGCAAAAACAGCCTCC
CGAAGTGCCCAGTTGTCGAAGTATCCACATTACAGTAAATGGATATCAAG
AATGATCTAGTCAAGGGCCCACTAGATAGACGTACGGTAGTGATCTATGT
TGGTATATCCGTGCAAAGTATATGACATAAGTGTACCTAACCACAACGGC
TTGGCCCCATCATACGATGCTTGATGTAAGCCCGGGGCTTCCCTTCCAGG
AAAGCATGTCACCGCCGTGTAGTGTATTTGGACCTTAACGATCTATCGAT
GCCATCAAACCGGTAATGTAATCTACATAAGCAGTACCCTTAGGTTTTAT
CGAAAAAGTGACGTAGTGTTCCAAAAAAGTATTTTGCGAAATTTGGGAAG
CCAGACTCTCTTTTGAGTACTACGCTTACTTACTACATATGTATCTCCCT
GTTGCTTGTCAGGTTCGATACCGACAGAGCTGGCGCAACTTGGCGCTCTT
GAGGTACTTAACCTCGCCTACAACAAGCTGGAAGGTGAGAGAAAAGCATC
GAGGCTATTCGAAGTCAAAATATTGGAAATATTTATAAGTTGTATTGAAT
ATTAATTACATCGGCGTGTGATTGTATAACTAAGCGCTTTGGATTGGGTC
ATTTACATACGCATTGAAAACGTTCATGAGACGGTTTGATGACACGAAAA
ATTGGTTGGATTTTATTTCTTCTGTGGGTCAAAAAGATACGTGTTCTCGG
AAAAAAGTCCGTTCTCAATTTCACCAATAATTTGTTAATATTAGTAGCAA
TCGACTTGTTGTACTATAGACAACGCTGTACTCGCAGAAAGATACTCGGC
AACCACGCGTCAAAGTGTGTCAGATCGAAACATTTATAGTCAAATCGCTG
AGAGCTACTGGTGCAAGACCCAAACAGTAATATATTCGTACCGCACCAAC
GCTATTTCTCGCTCTGCTACTTTACTATTGGCACCCTGAAGGACTTATCC
GACTTTGACACTCAAATTGTTAGCTGAAAGTCGTGTTTAGATGTTTTTCG
TGTCCACGAGGACTTTTCCATATACTACATGGTCTGAAGGCAAAATTAAC
TTCAAAACCACGTTTCCGTAGTGAAGCTGGGGTGGGACCTGGGACATGTA
GGGTTATGTAACACTTCCGGTAAAGTGGTATATTTCGCGCGATAAGACGT
GTCACACCTATTCCACCCTCGAGGGGCGGTACGAACGGGCTGTCCACTCG
ACTCAGCTGGTTGCTTCACAAGCGGTGGCAGCTTGGTTGTGTCATATCCT
GAAATACTCGCAGCGTCTCAGACAGTAGATGCTGTAGTTCGTACCCCGAG
GGCTTTGTCGTGACGCGAGCATGATATGTTGCATATGTGCTCGTTTGGTT
GCGCCTAACTAGAATTTTGTCGCGATTTCGATTTTAAAATTTGGTTAGAT
TTCATTTCCTCTGGTGGCCAAATAGAAGCTTGCCTTCGAAAAGAAAGTAT
GTCTATTCCCAATCCGAGCTCCAATTCTCATAACGACATAGGATTCTGAA
CACAGAAGCCATCGGTAAGTAATGCGGCTGCCCTGGAAGTACGCCTTGAC
ATGCCCCACTATCACTGGAAATTGAAGCACGTCGCAATATTACCTTTCAC
GTTGTGCCATATAAACCAGTCTCGTGAACTGTACCTGCGAGGAGAGTGCG
TCGACCTTATCCGTCTGTCCGGCCTAGTCTCTAGGGCCACAGTGCCATCG
CCACACTTCTTTGCTATATTTTATTCCTGGCGATATCCGAAACGCCTACT
ACCCTTTCTTTCTCATGGCCTCGCCCTCCCGCTCGTAGCGACCCTAAACA
ATCAGCTTAGCTTAGTTAACCCAACAAACCCAGGCACAGGATCTTTGATG
TGGATCAATGGAAAATAAAGGTATCTATACACACACTTGCATGTCAACTG
ACGAAGCCAGAAGGATATTGTTAACGTAAACAGAAACCTCCTTCCTCACC
CTACCTAAAAACCTCCGATGACTACTTACATCTAACAGCTATCATTTACA
GTGCCGTCAAAACAAAACGAAAAACCGGAAATTTCGGACGACTCTTTTCC
CACAATCGGTTCTACCTATTCTCTCTCCCTCGCCAACCCCTCGTCCTCAC
TTTTATCGGTAGTAGTCGAATTCCCCCAAAATCATCCACGTATCGCCCCA
CGTTCCGTCAACCATCCCGCAGCACTTTTGAGGAGGCCACGTCGGATGTT
CCTTGCCCCTGACAAAAACAGTCGCCCGAAGTGTCCAGTTGTTGAAGTAT
CCGCTTTACAGTATAAGGATATTAAGAATGATCTAGTCAAGGGCCCACTA
GATAGACGTACCGTAGGAATCTATGTTGGTACATTCGTGCAAAGTATATG
ACATAAGTGTACCTAACCACAACGGCTTGGCCCCATCATACGATGCTTGC
TGTAAGCCCGGGGCTTCCCTCCCAGAAAAGCATGTCACCGCCGTGTAGTG
TATTTGGACCTCAACGATCTATCGATGCCATCAAACCGGTAATGTAATCT
ATTTATCGAAAAGGTGACGTAGCGTACCAAAAAAGTACTTTGCGAAATTT
GGGAAGCCAGACTCTCTTTCGAGTATTACGCTTACTTATTACATATGCAT
CTCCCTCTTGCTTTTCAGGTTCGATACCGACAGAGCTGGCACAACTTGGC
GCTCTTCAGGTACTTAACCTCGCCTACAACAAGCTGGACGGTGAGAGAAA
AGCATCGAGGCTATTCGAAGTCGAAATATTGCAAATATATATAAGTTGTA
CTGAACGATTGTCACATTAGCGTGGGGGTGTATCTCTAAGCGTTCGCCAC
ACTTCTTTGCTATATTTTATTCCTGGCGATATCCGAAACGCCTACTACCC
TTTTTTTCTCATGGCCTCACCTTCCCGCTCGTAGCAACCTAACCACAACG
GCTTGGCCCCATCATACGATGCTTGCTGTAAGCCCGGGGCTTCCCTCCCA
GGAAAGCATGTCACCGCCGTGTAGTGTATTTAGACCTTAACGATCTATCG
ATGCCAACACGTAATGTAATCTACATAAGCAGTACCCACAGGTTTCTCCG
AAAAGGTGACGTAGCGTACCAAAAAAGTATTTTGCGTAATTTGGGAAGCC
AGACTCTCTTTTGAGTACTACGTTTGCTTACTACATATGTATCTACCTGT
TGCTTGTCAGGTTCGATACCGAAAGAGCTGGCGCAACTTGGCGCTCTTGA
AGGACTTTTCCTCTACAGCAACGAGCTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig9801:4363..11690+

>mRNA_P-canaliculata_contig9801.23897.1 ID=mRNA_P-canaliculata_contig9801.23897.1|Name=mRNA_P-canaliculata_contig9801.23897.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at P-canaliculata_contig9801:4363..11690+ (Pelvetia canaliculata dioecious)
TTGTCAGGTTCGATACCGAAAGAGCTGGCGCAACTTGGCGCTCTTAAGAA
ACTTCACCTCTCCTACAACAAGCTGGAAGTTGTCAGGTTCGATACCGAAA
GAGCTGGCGCAACTTGGCGCTCTTAAGAAACTTCACCTCTCCTACAACAA
GCTGGAAGGTTCGATACCGAAAGAGCTGGCGCAACTTGGCGCTCTTGAAG
GACTTTTCCTCTACAGCAACGAGCTGGTTCGATACCGAAAGAGCTGGCGC
AACTTGGCGCTCTTGAAGGACTTTTCCTCTACAGCAACGAGCTG
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