prot_P-canaliculata_contig9800.23895.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig9800.23895.1
Unique Name	prot_P-canaliculata_contig9800.23895.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	292

Homology

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BLAST of mRNA_P-canaliculata_contig9800.23895.1 vs. uniprot
Match: A0A6H5JM01_9PHAE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM01_9PHAE)

HSP 1 Score: 330 bits (845), Expect = 3.230e-108
Identity = 193/303 (63.70%), Postives = 226/303 (74.59%), Query Frame = 0

Query:    1 MAFLLETQLPKPGLESSRRNLVLSVLEEYHGPIVATVAEVLMRTERTTLAELTRLVQRDQGIMGVSRAGKTRTTVTVSHVKNSLLIMMQHNMVTATMPTERELRKAKANAS-RAANVRLYYTLQPLEALVRTRGPLFHYQATDKFGKVAGMVVDCFLRNGRRTLPEVKMEVLHRAEGLARIRQAQAASWGEEVEDA------EGMETVTAGAIQKSFQDLVMAKYIDKVPKLDLVTAAASPEKAKKPSMTFGTA----SSGKVGAGRXXXXXXXXXXXXSRELEERQRKGAAQTAARKRRMIG 292
            MAFLLE+Q+P   LESSRR LVLSV+EEYHGPIV+TVAEVLMR ERTTLAELTRLV RDQGIMGVSRAGKTRT VT ++VK SLLIM QHNMV A MPTE+E+RKA+A++S R++N+RL+YTL PLE LVRTRGP FH  A   F KVAG+VVDCFLR+GRRTLP+VK E+L R    AR R+A A       ED       + ++ VT+ +IQKSF++LVM KYIDKVPKLDLVT    PEKAKKPSMTFG      S GK  +              ++EL ERQ+KGAAQ +ARKRRM+G
Sbjct:    1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRAERTTLAELTRLVLRDQGIMGVSRAGKTRTKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSSNIRLHYTLLPLEVLVRTRGPQFHSHAAKTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALA-----NPEDXXXXXXXDNVQEVTSESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPADNDSKGKSASA------ANGQNGRNKELAERQQKGAAQRSARKRRMLG 292

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BLAST of mRNA_P-canaliculata_contig9800.23895.1 vs. uniprot
Match: D7FMS5_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS5_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 4.200e-107
Identity = 199/304 (65.46%), Postives = 231/304 (75.99%), Query Frame = 0

Query:    1 MAFLLETQLPKPGLESSRRNLVLSVLEEYHGPIVATVAEVLMRTERTTLAELTRLVQRDQGIMGVSRAGKTRTTVTVSHVKNSLLIMMQHNMVTATMPTERELRKAKANAS-RAANVRLYYTLQPLEALVRTRGPLFHYQATDKFGKVAGMVVDCFLRNGRRTLPEVKMEVLHRAEGLARIRQAQAASWGEEVEDA------EGMETVTAGAIQKSFQDLVMAKYIDKVPKLDLVTAAASPEKAKKPSMTFGTASSGKVGAGRXXXXXXXXXXXX-----SRELEERQRKGAAQTAARKRRMIG 292
            MAFLLE+Q+P   LESSRR LVLSV+EEYHGPIV+TVAEVLMR +RTTLAELTRLV RDQGIMGVSRAGKT T VT ++VK SLLIM QHNMV A MPTE+E+RKA+A++S R+ N+RL+YTL PLE LVRTRGP FH  A   F KVAG+VVDCFLR+GRRTLP+VK E+L R    AR R+A A       ED       + ++ VT  +IQKSF++LVM KYIDKVPKLDLVT    PEKAKKPSMTFG  +        XXXXXXXXXX       ++EL ERQ+KGAAQT+ARKRRM+G
Sbjct:    1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMGVSRAGKTITKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSGNIRLHYTLLPLEVLVRTRGPQFHSHAARTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALA-----NPEDXXXXXXXDHVQEVTPESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPAGSXXXXXXXXXXXXXXXXANGQNGRNKELAERQQKGAAQTSARKRRMLG 299

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig9800.23895.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig9800.23895.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JM01_9PHAE	3.230e-108	63.70	DNA-directed RNA polymerase III subunit RPC3 n=1 T...	[more]
D7FMS5_ECTSI	4.200e-107	65.46	DNA-directed RNA polymerase III subunit RPC3 n=1 T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013197	RNA polymerase III subunit RPC82-related, helix-turn-helix	PFAM	PF08221	HTH_9	coord: 21..56 e-value: 3.6E-5 score: 23.8
IPR039748	DNA-directed RNA polymerase III subunit RPC3	PANTHER	PTHR12949	RNA POLYMERASE III DNA DIRECTED -RELATED	coord: 20..287

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig9800	contig	P-canaliculata_contig9800:416..8185 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig9800.23895.1	mRNA_P-canaliculata_contig9800.23895.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig9800 416..8185 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig9800.23895.1 ID=prot_P-canaliculata_contig9800.23895.1|Name=mRNA_P-canaliculata_contig9800.23895.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=292bp
MAFLLETQLPKPGLESSRRNLVLSVLEEYHGPIVATVAEVLMRTERTTLA
ELTRLVQRDQGIMGVSRAGKTRTTVTVSHVKNSLLIMMQHNMVTATMPTE
RELRKAKANASRAANVRLYYTLQPLEALVRTRGPLFHYQATDKFGKVAGM
VVDCFLRNGRRTLPEVKMEVLHRAEGLARIRQAQAASWGEEVEDAEGMET
VTAGAIQKSFQDLVMAKYIDKVPKLDLVTAAASPEKAKKPSMTFGTASSG
KVGAGRDGGRNANGKNSKSRELEERQRKGAAQTAARKRRMIG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013197	RNA_pol_III_RPC82-rel_HTH
IPR039748	RPC3