mRNA_P-canaliculata_contig97641.23864.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97641.23864.1
Unique NamemRNA_P-canaliculata_contig97641.23864.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig97641.23864.1 vs. uniprot
Match: A0A848U7Q7_9GAMM (Uncharacterized protein n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848U7Q7_9GAMM)

HSP 1 Score: 82.8 bits (203), Expect = 1.650e-16
Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = 1 
Query:  463 LVEHEDPSVRRRSVDTLSRWTRDPAHEPLIVDALDDADAGVREAAVYALAGRPAAGQDVRGELLTLIENGGEDEGVRRGAVLALNRMPLDDVERRRVQAVERELA 777
            L  HED +VR  S+  LSRW+ D    P+++DAL D + GVR++A YAL G     Q V   L  +  + G+ +  R  AVLAL  M L D +RR + AV+RELA
Sbjct:    1 LTSHEDAAVRSISLSILSRWSTDGRDTPVLLDALQDTEQGVRQSAAYALVGHEVVNQSVIDSLWAVAVDDGDTKATRSAAVLALRGMQLSDAQRRDLAAVQRELA 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97641.23864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A848U7Q7_9GAMM1.650e-1643.81Uncharacterized protein n=1 Tax=Granulosicoccus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97641contigP-canaliculata_contig97641:21..809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size789
Cds size789
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.6810613-CDS-P-canaliculata_contig97641:20..8091622817339.6810613-CDS-P-canaliculata_contig97641:20..809Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97641 21..809 -
1693495233.2787545-CDS-P-canaliculata_contig97641:20..8091693495233.2787545-CDS-P-canaliculata_contig97641:20..809Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97641 21..809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97641.23864.1prot_P-canaliculata_contig97641.23864.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97641 21..809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97641.23864.1

>prot_P-canaliculata_contig97641.23864.1 ID=prot_P-canaliculata_contig97641.23864.1|Name=mRNA_P-canaliculata_contig97641.23864.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=263bp
SVTAAAAGTATVGHDPIDPRELGREPLTDAEHAALLDRLSRDPVLLAALI
DEFRSETDRRRLRRLAGVLDDVNDPAVGLLAAELVYSADASQRQVGLELL
GQVSSGDGQARDIASGLLSSETDGDVLVGALNVLSRPGNVDDDTRASLAG
QVALLVEHEDPSVRRRSVDTLSRWTRDPAHEPLIVDALDDADAGVREAAV
YALAGRPAAGQDVRGELLTLIENGGEDEGVRRGAVLALNRMPLDDVERRR
VQAVERELARRR*
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mRNA from alignment at P-canaliculata_contig97641:21..809-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97641.23864.1 ID=mRNA_P-canaliculata_contig97641.23864.1|Name=mRNA_P-canaliculata_contig97641.23864.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=789bp|location=Sequence derived from alignment at P-canaliculata_contig97641:21..809- (Pelvetia canaliculata dioecious)
TCCGTCACGGCTGCCGCGGCGGGTACCGCGACCGTCGGCCACGATCCGAT
CGACCCGCGCGAGCTCGGTCGGGAACCGTTGACCGATGCGGAACACGCGG
CACTGCTCGATCGCCTCTCGCGCGATCCGGTGTTGCTCGCGGCCCTGATC
GACGAGTTCCGCTCGGAGACCGATCGGCGGCGGCTCCGTCGGCTCGCCGG
TGTGCTCGACGATGTGAACGACCCGGCCGTGGGCCTGCTCGCCGCCGAGC
TCGTCTACTCCGCCGACGCCTCGCAGCGGCAGGTGGGGCTCGAGCTCCTC
GGCCAGGTTTCGTCCGGCGACGGGCAGGCTCGCGACATCGCCTCCGGGCT
GCTCTCGAGCGAGACGGACGGCGACGTGCTGGTCGGCGCGCTGAACGTCC
TGTCCCGCCCGGGGAACGTCGACGACGACACGCGCGCCTCGTTGGCCGGT
CAGGTGGCGTTGCTGGTCGAACACGAGGACCCGTCGGTCCGTCGTCGAAG
CGTCGACACCTTGTCGCGCTGGACGAGGGACCCGGCTCACGAGCCGTTGA
TCGTCGATGCGCTGGACGACGCGGACGCCGGCGTGCGGGAAGCGGCGGTC
TACGCCCTCGCCGGTCGGCCCGCCGCCGGGCAGGACGTGCGCGGGGAGCT
GCTGACGTTGATCGAGAACGGCGGGGAGGACGAGGGTGTTCGCCGCGGGG
CGGTGCTCGCGCTGAACCGCATGCCGCTTGACGATGTCGAACGGCGTCGA
GTCCAAGCCGTCGAACGGGAGCTCGCCAGACGCCGATGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig97641:21..809-

>mRNA_P-canaliculata_contig97641.23864.1 ID=mRNA_P-canaliculata_contig97641.23864.1|Name=mRNA_P-canaliculata_contig97641.23864.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1578bp|location=Sequence derived from alignment at P-canaliculata_contig97641:21..809- (Pelvetia canaliculata dioecious)
TCCGTCACGGCTGCCGCGGCGGGTACCGCGACCGTCGGCCACGATCCGAT
CGACCCGCGCGAGCTCGGTCGGGAACCGTTGACCGATGCGGAACACGCGG
CACTGCTCGATCGCCTCTCGCGCGATCCGGTGTTGCTCGCGGCCCTGATC
GACGAGTTCCGCTCGGAGACCGATCGGCGGCGGCTCCGTCGGCTCGCCGG
TGTGCTCGACGATGTGAACGACCCGGCCGTGGGCCTGCTCGCCGCCGAGC
TCGTCTACTCCGCCGACGCCTCGCAGCGGCAGGTGGGGCTCGAGCTCCTC
GGCCAGGTTTCGTCCGGCGACGGGCAGGCTCGCGACATCGCCTCCGGGCT
GCTCTCGAGCGAGACGGACGGCGACGTGCTGGTCGGCGCGCTGAACGTCC
TGTCCCGCCCGGGGAACGTCGACGACGACACGCGCGCCTCGTTGGCCGGT
CAGGTGGCGTTGCTGGTCGAACACGAGGACCCGTCGGTCCGTCGTCGAAG
CGTCGACACCTTGTCGCGCTGGACGAGGGACCCGGCTCACGAGCCGTTGA
TCGTCGATGCGCTGGACGACGCGGACGCCGGCGTGCGGGAAGCGGCGGTC
TACGCCCTCGCCGGTCGGCCCGCCGCCGGGCAGGACGTGCGCGGGGAGCT
GCTGACGTTGATCGAGAACGGCGGGGAGGACGAGGGTGTTCGCCGCGGGG
CGGTGCTCGCGCTGAACCGCATGCCGCTTGACGATGTCGAACGGCGTCGA
GTCCAAGCCGTCGAACGGGAGCTCGCCAGACGCCGATGATCCGTCACGGC
TGCCGCGGCGGGTACCGCGACCGTCGGCCACGATCCGATCGACCCGCGCG
AGCTCGGTCGGGAACCGTTGACCGATGCGGAACACGCGGCACTGCTCGAT
CGCCTCTCGCGCGATCCGGTGTTGCTCGCGGCCCTGATCGACGAGTTCCG
CTCGGAGACCGATCGGCGGCGGCTCCGTCGGCTCGCCGGTGTGCTCGACG
ATGTGAACGACCCGGCCGTGGGCCTGCTCGCCGCCGAGCTCGTCTACTCC
GCCGACGCCTCGCAGCGGCAGGTGGGGCTCGAGCTCCTCGGCCAGGTTTC
GTCCGGCGACGGGCAGGCTCGCGACATCGCCTCCGGGCTGCTCTCGAGCG
AGACGGACGGCGACGTGCTGGTCGGCGCGCTGAACGTCCTGTCCCGCCCG
GGGAACGTCGACGACGACACGCGCGCCTCGTTGGCCGGTCAGGTGGCGTT
GCTGGTCGAACACGAGGACCCGTCGGTCCGTCGTCGAAGCGTCGACACCT
TGTCGCGCTGGACGAGGGACCCGGCTCACGAGCCGTTGATCGTCGATGCG
CTGGACGACGCGGACGCCGGCGTGCGGGAAGCGGCGGTCTACGCCCTCGC
CGGTCGGCCCGCCGCCGGGCAGGACGTGCGCGGGGAGCTGCTGACGTTGA
TCGAGAACGGCGGGGAGGACGAGGGTGTTCGCCGCGGGGCGGTGCTCGCG
CTGAACCGCATGCCGCTTGACGATGTCGAACGGCGTCGAGTCCAAGCCGT
CGAACGGGAGCTCGCCAGACGCCGATGA
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