mRNA_P-canaliculata_contig101493.239.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101493.239.1
Unique NamemRNA_P-canaliculata_contig101493.239.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig101493.239.1 vs. uniprot
Match: UPI0016757282 (AraC family transcriptional regulator n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI0016757282)

HSP 1 Score: 321 bits (822), Expect = 1.850e-105
Identity = 150/323 (46.44%), Postives = 220/323 (68.11%), Query Frame = 1
Query:    1 LESLGFPKAKSLHFLGLEAVDLKISFDRLSLDPFVDCLAAAAEFTSNPNIALHLGHKFRVGTFGQTGNLYAYCKNLREVIPMNNRYQKIAIDAGQAEYFKDDQGRQHMCFRPHYSDIEKYRAITDIIMGSYVTTYRWLTWGSGEDILSTHLPYPRPKNLDAHEQIFKSKLVFDSNHTCLEFSDAAMNQVITTHDPERLLRARTKLDQILGLQMANKAFEAAIDVALRGAIESGQVSAEIVADRMGLSRSAFRAKMNASGEGLRPRLDRIRKKMFVEKYRDGQNFSQIAMSLAYNDQAAMNKAFKRWFGITPSKWSKQNATAET 969
            L   GFP+ KSL  L +     K    RLS++PF++ L  A+E   +P +AL +GHKFRV TF +TG++Y YCKNL  VI MN++YQK+AID G+  + +D   +  M F PHY D+E+YR ITD+IMG+Y   Y WL+WGSGE+IL   LPY  P+NL  HE I++  + F++  T L+FSD AM   + +++PERL+R + +LD ++G     K+F+ +++ A+  AI++G +++ +VADRMGL+ SAFR  +  SG   R R+D +R+ +F E   +GQ+FSQIA+ LAYNDQ AMN+AF+RW+G+TPS+W     + E+
Sbjct:   17 LAGFGFPREKSLSLLNIGEDAFKNPDARLSVEPFLELLNFASEALGDPQLALRVGHKFRVATFAETGSVYGYCKNLEAVIKMNDQYQKLAIDVGKVTFVQDGPDQNFMVFSPHYEDMERYRRITDVIMGAYFAAYHWLSWGSGEEILGVQLPYAAPENLKTHEAIYQIPIQFNAEQTSLQFSDIAMADTLMSYNPERLVRIKKRLDNMIGQGACTKSFDTSVNAAILAAIKNGHITSHVVADRMGLTWSAFRTALKRSGPVFRDRVDAVRQGLFHEYLAEGQSFSQIALGLAYNDQPAMNRAFRRWYGMTPSQWKAARHSGES 339          
BLAST of mRNA_P-canaliculata_contig101493.239.1 vs. uniprot
Match: UPI0003F644E7 (AraC family transcriptional regulator n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0003F644E7)

HSP 1 Score: 196 bits (498), Expect = 1.020e-56
Identity = 105/321 (32.71%), Postives = 175/321 (54.52%), Query Frame = 1
Query:    1 LESLGFPKAKSLHFLGLEAVDLKISFDRLSLDPFVDCLAAAAEFTSNPNIALHLGHKFRVGTFGQTGNLYAYCKNLREVIPMNNRYQKIAIDAGQAEYFKDDQGRQHMCFRPHYSDIEKYRAITDIIMGSYVTTYRWLTWGSGEDILSTHLPYPRPKNLDAHEQIFKSKLVFDSNHTCLEFSDAAMNQVITTHDPERLLRARTKLDQILGLQMANKAFEAAIDVALRGAIESGQVSAEIVADRMGLSRSAFRAKMNASGEGLRPRLDRIRKKMFVEKYRDGQNFSQIAMSLAYNDQAAMNKAFKRWFGITPSKWSKQNATA 963
            LE+ GFP+  +L  LG+    L     R+  +        AA+  S+P I + +G+KFRV  + +TG +Y+YC N+ + + +N RYQ +A+D G  EY  +D GR H      Y   +    +   + G++ T  RWL+W +G+++   HL    P+++  +E++ +  +VF      +EF   ++ + + + DPE+L +    LD++L L    +   AAI+ +++GA+  G V+  +VA RM L     R  ++      R  L+  RKK+F E +   ++F  IA SLAYNDQAA N+AFKRW+GI P ++    + A
Sbjct:   28 LENFGFPRENALAALGIGEDILANPKARIEAERAEHMYQVAAQALSDPRIGIRVGYKFRVNDYQKTGAIYSYCDNIGQALELNRRYQCLAVDVGMPEYRIED-GR-HFFLYNRYEAAKDMHHVMGAVFGAWATMLRWLSWAAGQELKEAHLMPRAPEDISFYEEVVQCPIVFGMPRNHVEFHPESITKPLISRDPEKLAQCVALLDKVLNLSHEIETLRAAIEASIQGAMAEGYVNLTVVARRMNLGERQLRKMLSQQNISFRNLLEDERKKLFKELHARDESFVSIAQSLAYNDQAAFNRAFKRWYGIAPGQYEATQSEA 346          
BLAST of mRNA_P-canaliculata_contig101493.239.1 vs. uniprot
Match: A0A363UL76_9GAMM (AraC family transcriptional regulator n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A363UL76_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 4.150e-20
Identity = 78/320 (24.38%), Postives = 141/320 (44.06%), Query Frame = 1
Query:    1 LESLGFPKAKSLHFLGLEAVDLKISFDRLSLDPFVDCLAAAAEFTSNPNIALHLGHKFRVGTFGQTGNLYAYCKNLREVIPMNNRYQKIAIDAGQAEYFKDDQGRQHMCFRPHYSDIEKYRAITDIIMGSYVTTYRWLTWGSGEDILSTH--LPYPRPKNLDAHEQIFKSKLVFDSNHTCLEFSDAAMNQVITTHDPERLLRARTKLDQILGLQMANKAFEAAIDVALRGAIESGQVSAEIVADRMGLSRSAFRAKMNASGEGLRPRLDRIRKKMFVEKYRD-GQNFSQIAMSLAYNDQAAMNKAFKRWFGITPSKWSKQ 951
            +E  G      L  +GL A  L  + DR+    F     AAA     P++ L +G   R G +G  G +   C  L + +  + RYQ++  D G+A       G+  + +          R + +  +  +V+  RW+T   GED+  T   LP+P P +  AH  +F+  + FD+  T LEF    ++  +   DP    +      ++L     ++  E  +   LR  + +G       A  + ++    + ++   G      +D  R+ + +E + + G   +++A  L ++DQ A N+AF+RWF +TP +   Q
Sbjct:   16 VEQAGGDVPALLSQVGLSAQALAPTADRVPGAVFARLFDAAAAQLRRPDLGLAVGSAIRPGHYGVLGYVVMSCDTLGDALTRHLRYQRLVADIGEASLTPLPDGQLRLTWATQRPPT---RQLAEHNLAGWVSYARWIT---GEDLSPTRVLLPHPAPDDQQAHAALFQCPVHFDAGVTALEFPAHYLDLRMAQADPGLREQMDRYAQRLLTEYAQSRRAEGRLRHWLRRHLAAGDAQLVTAAAALNVAPRTLQRRLATEGWTFNRLVDDTRRTLALELFAEPGMTGAELAFMLGFSDQTAFNRAFRRWFDMTPGEARSQ 329          
BLAST of mRNA_P-canaliculata_contig101493.239.1 vs. uniprot
Match: A0A6N7LXM6_9GAMM (Helix-turn-helix domain-containing protein n=2 Tax=Alcanivorax sediminis TaxID=2663008 RepID=A0A6N7LXM6_9GAMM)

HSP 1 Score: 91.3 bits (225), Expect = 3.460e-17
Identity = 73/319 (22.88%), Postives = 141/319 (44.20%), Query Frame = 1
Query:   13 GFPKAKSLHFLGLEAVDLKISFDRLSLDPFVDCLAAAAEFTSNPNIALHLGHKFRVGTFGQTGNLYAYCKNLREVIPMNNRYQKIAID-AGQAEYFKDDQGRQHMCFRPHYSDIEKYRAITDIIMGSYVTTYRWLTWGSGEDILSTHLPYPRPKNLDAHEQIFKSKLVFDSNHTCLEFSDAAMNQVITTHDPERLLRARTKLDQILGLQMANKAFEAAIDVALRGAIESGQVSAEIVADRMGLSRSAFRAKMNASGEGLRPRLDRIRKKMFVE-KYRDGQNFSQIAMSLAYNDQAAMNKAFKRWFGITPSKWSKQNATA 963
            G   + +L  LG+   DL+    R+S+      +  A + +++P   LH+G   R    G+ G        LR+ I +   + K+  + AG    ++DDQ    + +      +  Y    D    + +T  RW+  G   +    HL +    N   +++IF   +VF+     +  S+  ++  +   DP+    AR+++ + +    A       + + ++   + G    E +AD +G+     R ++ A        L+  R+++  +      ++ +QIA+ L Y++Q+A N+AFKRWFGITP  +  Q   A
Sbjct:   30 GVDLSTALVELGVSNDDLENPQSRISMTVEDQLIRKALQHSNDPLFGLHMGEAIRPRFMGELGYASMSSATLRDAIELMIPFMKVTTEYAGIRFEWRDDQ--LWLIWESDMEALPTYPMRIDANFAAAITFGRWIL-GKDYNPERIHLRHAPQGNAAEYQRIFNCAVVFEQQENAIVLSNDILDLPLRDADPDVHKLARSRMQRAVTQYHARDNLLDQVRLEIQKCFQRGVPQLEPIADELGVKPWTLRRQLRAENTDFSSLLEEERRRIACDWLLHSERSVNQIALDLGYSEQSAFNRAFKRWFGITPVSYRDQGRDA 345          
BLAST of mRNA_P-canaliculata_contig101493.239.1 vs. uniprot
Match: UPI00110D467F (AraC family transcriptional regulator n=1 Tax=Alcanivorax gelatiniphagus TaxID=1194167 RepID=UPI00110D467F)

HSP 1 Score: 90.1 bits (222), Expect = 8.670e-17
Identity = 72/318 (22.64%), Postives = 138/318 (43.40%), Query Frame = 1
Query:   13 GFPKAKSLHFLGLEAVDLKISFDRLSLDPFVDCLAAAAEFTSNPNIALHLGHKFRVGTFGQTGNLYAYCKNLREVIPMNNRYQKIAIDAGQAEYFKDDQGRQHMCFRPHYSDIEKYRAITDIIMGSYVTTYRWLTWGSGEDILSTHLPYPRPKNLDAHEQIFKSKLVFDSNHTCLEFSDAAMNQVITTHDPERLLRARTKLDQILGLQMANKAFEAAIDVALRGAIESGQVSAEIVADRMGLSRSAFRAKMNASGEGLRPRLDRIRKKMFVEKYRDG-QNFSQIAMSLAYNDQAAMNKAFKRWFGITPSKWSKQNATA 963
            G   + +L  LG+   DL+    RL L      L  A   + +P   LH+G   R    G+ G        LR+ I +   + ++  +  +  +   D     +      S +  +R   D  +   V   RW+  G   D L+ HL +P P   D + ++F+  + F      +      +++ +   DPE    AR+++ + +    A       + + ++  +  G    E +A+R+G+     R ++ A        L+  R+++  +  R   ++ +QIA+ L Y++Q+A N+AFKRWFG+TP  + + +  A
Sbjct:   30 GVDLSDALVRLGVSEADLESPHARLPLKVEQRLLEHAVTRSGDPLFGLHMGEGIRPRFMGELGYASMSSATLRDAIELMIPFTRVTSEFFELRFEWRDDDLWLIWDTLDNSPLSGHRV--DATLAGAVVFGRWIL-GEDHDPLAVHLVHPAPDQDDEYRRVFRCPIHFGQTLNAVVLDAGVLDRPLRDADPEVHRLARSRVQRAVTQYRARDNLLEQVRLEIQQRLIKGIPQLEPIAERLGVKPWTLRRRLRAEQTDFSTLLEDERRRLACDWLRHSDRSVNQIALDLGYSEQSAFNRAFKRWFGVTPVHYREHHRDA 344          
BLAST of mRNA_P-canaliculata_contig101493.239.1 vs. uniprot
Match: A0A220SLK0_9GAMM (AraC family transcriptional regulator n=1 Tax=Alcanivorax sp. N3-2A TaxID=2014542 RepID=A0A220SLK0_9GAMM)

HSP 1 Score: 89.7 bits (221), Expect = 1.240e-16
Identity = 71/315 (22.54%), Postives = 141/315 (44.76%), Query Frame = 1
Query:   13 GFPKAKSLHFLGLEAVDLKISFDRLSLDPFVDCLAAAAEFTSNPNIALHLGHKFRVGTFGQTGNLYAYCKNLREVIPMNNRYQKIAIDAGQAEYFKDDQGRQ-HMCFRPHYSDIEKYRAITDIIMGSYVTTYRWLTWGSGEDILSTHLPYPRPKNLDAHEQIFKSKLVFDSNHTCLEFSDAAMNQVITTHDPERLLRARTKLDQILGLQMANKAFEAAIDVALRGAIESGQVSAEIVADRMGLSRSAFRAKMNASGEGLRPRLDRIRKKMFVE-KYRDGQNFSQIAMSLAYNDQAAMNKAFKRWFGITPSKWSKQ 951
            G   + +L  LG+   DL+    R+ L      L  A E + +P   LH+G   R    G+ G        LR+ I +   + ++  +  +  +  + QG    + +   + D    R   +      V   RW+  G+ +D L+ HL +P P     ++++F+  + F+     L   +A ++  +   DPE    +R+++ + L   +A       + + ++  +  G    E +A+R+G+     R ++ A        L+  R+++  +      ++ +QIA+ L Y++Q+A N+AFKRWF +TP  +  Q
Sbjct:   30 GVDLSDALVRLGVSEHDLEAPGARIPLRIEDRLLQLALEGSDDPLFGLHMGECIRPRFMGELGYASMSSATLRDAIELMIPFARVTSEFAELRF--EWQGHDLWLIWETPFHDRVTSRHRLEAFFAGAVVFGRWIL-GADKDPLAVHLRHPPPGGEQEYQRLFRCPVRFNQPDNALVIDEALLDLPLRDADPEVNRLSRSRMQRALTQYLARDNLLEQVRLEIQRRLVDGVPQLERIAERLGVKPWTLRRRLRAEQADFSTLLEEERQRLACDWLLHSDRSVNQIALDLGYSEQSAFNRAFKRWFAVTPLAYRDQ 341          
BLAST of mRNA_P-canaliculata_contig101493.239.1 vs. uniprot
Match: UPI001BA83C37 (AraC family transcriptional regulator n=1 Tax=Caulobacter sp. S6 TaxID=2823693 RepID=UPI001BA83C37)

HSP 1 Score: 88.2 bits (217), Expect = 3.840e-16
Identity = 67/312 (21.47%), Postives = 138/312 (44.23%), Query Frame = 1
Query:   13 GFPKAKSLHFLGLEAVDLKISFDRLSLDPFVDCLAAAAEFTSNPNIALHLGHKFRVGTFGQTGNLYAYCKNLREVIPMNNRYQKIAIDA---GQAEYFKDDQGRQHMCFRPHYSDIEKYRAITDIIMGSYVTTYRWLTWGSGEDILSTHLPYPRPKNLDAHEQIFKSKLVFDSNHTCLEFSDAAMNQVITTHDPERLLRARTKLDQILGLQMANKAFEAAIDVALRGAIESGQVSAEIVADRMGLSRSAFRAKMNASGEGLRPRLDRIRKKMFVEKYRDGQNFS--QIAMSLAYNDQAAMNKAFKRWFGITP 933
            G  +A  L   G+++  L+    RL    F   +  A   T +P +AL  G    +  F   G +    + ++  +   NRY ++ ++    G+A+ F+       +       +   +  +T+       T  R   +G    +L  H+ +P P     +++IF++ +VF+++   L    A +   I               + +L    ++ +  A ++  L   + +G+VS E++A  +G+SR     ++ A G      LD +R+++ +  Y +G+  S  ++A  + ++D AA ++AFKRW G +P
Sbjct:   22 GADRAVLLERAGIDSRLLEDQDSRLPFARFAALMRVAKALTGDPALALRFGETIDLSDFSIVGLIANASETMQHALTQLNRYGRLVVEVDGVGEADRFQHQMIAGQLWMTDTRKNPNDFPELTESTFARMATHTR--RFGDTPFVLEVHVTHPEPAYRAEYDRIFRAPVVFEADRNALRIDPAWIGYRIQLQPRYAFGVLSRHAEALLESLESSNSVRARVESRLMPILHTGEVSMELIARDLGMSRQTLFRRLKAEGVTFEKLLDDLRRRLALH-YLNGRRASVNEVAYLVGFSDPAAFSRAFKRWTGASP 330          
BLAST of mRNA_P-canaliculata_contig101493.239.1 vs. uniprot
Match: A0A095SFD7_9GAMM (AraC family transcriptional regulator n=5 Tax=Alcanivorax TaxID=59753 RepID=A0A095SFD7_9GAMM)

HSP 1 Score: 88.2 bits (217), Expect = 4.270e-16
Identity = 66/310 (21.29%), Postives = 138/310 (44.52%), Query Frame = 1
Query:   43 LGLEAVDLKISFDRLSLDPFVDCLAAAAEFTSNPNIALHLGHKFRVGTFGQTGNLYAYCKNLREVIPMNNRYQKIAIDAGQAEYFKDDQGRQHMCFRPHYSDIEKYRAITDIIMGSYVTTYRWLTWGSGEDILSTHLPYPRPKNLDAHE--QIFKSKLVFDSNHTCLEFSDAAMNQVITTHDPERLLRARTKLDQILGLQMANKAFEAAIDVALRGAIESGQVSAEIVADRMGLSRSAFRAKMNASGEGLRPRLDRIRKKMFVE-KYRDGQNFSQIAMSLAYNDQAAMNKAFKRWFGITPSKWSKQNATA 963
            LG+   DL+    R+++      L  A + + +P   LH+G   R    G+ G        L + I +   + K+  +  Q  +   D+    + +     D+  Y A  D      +T  RWL    G+++    + +  P   +  E  +IF+ ++ F+     +    + ++  +   DPE    AR+++ + +    A       + + ++  ++ G    E +AD++G+     R ++ +        L+  R+++  +      ++ +QIA+ L Y++Q+A N+AFKRWFG+TP  + +Q  +A
Sbjct:   40 LGISNDDLENPQSRIAMTVENQLLKQAMQKSGDPLFGLHMGEGIRPRFIGELGYASMSSATLGDAIELMIPFTKVTSECAQLRFEWRDKSLW-LIWESDLEDLATYPARIDANFAGAITYGRWLI---GKEMSPARVLFRHPPQGEEQEYQRIFRCEVAFEQPQNAIVLDASLLDLPLRDADPEMHKVARSRMQRAVTQYHARDNLLEQVRLEIQKRLQQGVPQLEPIADQLGIKPWTLRRQLRSENTDFSSLLEDERRRLACDWLLHSDRSVNQIALDLGYSEQSAFNRAFKRWFGVTPVHYREQQGSA 345          
BLAST of mRNA_P-canaliculata_contig101493.239.1 vs. uniprot
Match: A0A095TU38_9GAMM (AraC family transcriptional regulator n=1 Tax=Alcanivorax nanhaiticus TaxID=1177154 RepID=A0A095TU38_9GAMM)

HSP 1 Score: 87.4 bits (215), Expect = 7.800e-16
Identity = 74/322 (22.98%), Postives = 144/322 (44.72%), Query Frame = 1
Query:   13 GFPKAKSLHFLGLEAVDLKISFDRLSLDPFVDCLAAAAEFTSNPNIALHLGHKFRVGTFGQTGNLYAYCKNLREVIPMNNRYQKIAIDAGQAEYFKDDQGRQHMCFRPHYSDIEK---YRAITDIIMGSYVTTYRWLTWGSGEDILSTHLPYPRPKNLDA-HEQIFKSKLVFDSNHTCLEFSDAAMNQVITTHDPERLLRARTKLDQILGLQMANKAFEAAIDVALRGAIESGQVSAEIVADRMGLSRSAFRAKMNASGEGLRPRLDRIRKKMFVE-KYRDGQNFSQIAMSLAYNDQAAMNKAFKRWFGITPSKWSKQNATA 963
            G   + SL  LG+   DL+    R+++      +  A   +++P   LH+G   R    G+ G        LR+ I +   + K+  +     +    + R +  +    SD+E    Y    D    + +T  RW+  G   +    HL +P P+  +A + +IF  ++ F  +   +  SD  ++  +   DPE    AR+++ + +    A       + + ++  ++ G    E +AD +G+     R ++ A        L+  R+++  +      ++ +QIA+ L Y++Q+A N+AFKRWFG+TP  + +Q   A
Sbjct:   30 GVDLSSSLVELGVSNEDLENPQSRIAMAVEDQLIRQALIHSNDPLFGLHMGEVIRPRFMGELGYASMSSATLRDAIELMIPFMKVTTEYAALRF----EWRNNYLWLIWESDMESLPTYPMRIDANFAAAITFGRWIL-GKNYNPELIHLRHP-PQGAEAEYLRIFGCEVAFQQSENAIVLSDDILDLPLRDADPEVHKLARSRMQRAVTQYHARDNLLDQVRLEIQKCLQDGVPQLEPIADELGVKPWTLRRQLRAENTDFSSMLEEERRRLACDWLLHSERSVNQIALDLGYSEQSAFNRAFKRWFGMTPVSYREQGRDA 345          
BLAST of mRNA_P-canaliculata_contig101493.239.1 vs. uniprot
Match: A0A845MMH1_9GAMM (Helix-turn-helix domain-containing protein n=2 Tax=unclassified Alcanivorax TaxID=2638842 RepID=A0A845MMH1_9GAMM)

HSP 1 Score: 85.9 bits (211), Expect = 2.730e-15
Identity = 66/309 (21.36%), Postives = 134/309 (43.37%), Query Frame = 1
Query:   43 LGLEAVDLKISFDRLSLDPFVDCLAAAAEFTSNPNIALHLGHKFRVGTFGQTGNLYAYCKNLREVIPMNNRYQKIAIDAGQAEY-FKDDQGRQHMCFRPHYSDIEKYRAITDIIMGSYVTTYRWLTWGSGEDILSTHLPYPRPKNLDAHEQIFKSKLVFDSNHTCLEFSDAAMNQVITTHDPERLLRARTKLDQILGLQMANKAFEAAIDVALRGAIESGQVSAEIVADRMGLSRSAFRAKMNASGEGLRPRLDRIRKKMFVEKYRDGQ-NFSQIAMSLAYNDQAAMNKAFKRWFGITPSKWSKQNATA 963
            LG+   DL+    R+++      +  A + +++P   LH+G   R    G+ G        LR+ I +   + K+  +     + +KD+     + +      +  Y    D    + +T  RW+  G   +    H  +P   +   +++IF   + F+     +  S   ++  +   DP+    AR+++ + +    A       + + ++   + G    E +AD +G+     R ++ A        L+  R+++  +     Q + +QIA+ L Y++Q+A N+AFKRWFGITP  + +Q   A
Sbjct:   40 LGVSNEDLENPQSRIAMTVEDQLIRLALKHSNDPLFGLHMGEAIRPRFMGELGYASMSSATLRDAIELMIPFMKVTTEYASMRFEWKDED--LWLIWDSDMEAMPTYPMRIDANFAAAITFGRWIL-GQSYNPERIHFQHPAQGDPQEYKRIFNCPVAFEQPENAIVLSHQLLDLPLRDADPDVHKLARSRMQRAVTQYHARDNLLDQVRLEIQKCFQQGVPQLEPIADELGVKPWTLRRQLRAENTDFSSLLEEERRRLACDWLLHSQRSVNQIALDLGYSEQSAFNRAFKRWFGITPISYREQGREA 345          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101493.239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00167572821.850e-10546.44AraC family transcriptional regulator n=1 Tax=Lito... [more]
UPI0003F644E71.020e-5632.71AraC family transcriptional regulator n=1 Tax=Hell... [more]
A0A363UL76_9GAMM4.150e-2024.38AraC family transcriptional regulator n=2 Tax=Gamm... [more]
A0A6N7LXM6_9GAMM3.460e-1722.88Helix-turn-helix domain-containing protein n=2 Tax... [more]
UPI00110D467F8.670e-1722.64AraC family transcriptional regulator n=1 Tax=Alca... [more]
A0A220SLK0_9GAMM1.240e-1622.54AraC family transcriptional regulator n=1 Tax=Alca... [more]
UPI001BA83C373.840e-1621.47AraC family transcriptional regulator n=1 Tax=Caul... [more]
A0A095SFD7_9GAMM4.270e-1621.29AraC family transcriptional regulator n=5 Tax=Alca... [more]
A0A095TU38_9GAMM7.800e-1622.98AraC family transcriptional regulator n=1 Tax=Alca... [more]
A0A845MMH1_9GAMM2.730e-1521.36Helix-turn-helix domain-containing protein n=2 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101493contigP-canaliculata_contig101493:1..972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score199.9
Seed ortholog evalue1.8e-48
Seed eggNOG ortholog1121948.AUAC01000008_gene834
EggNOG free text desc.Arabinose-binding domain of AraC transcription regulator, N-term
EggNOG OGs1MX23@1224,2TT6H@28211,44051@69657,COG2207@1,COG2207@2
COG Functional cat.K
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size972
Cds size972
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.2058282-CDS-P-canaliculata_contig101493:0..9721622815588.2058282-CDS-P-canaliculata_contig101493:0..972Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101493 1..972 +
1693494152.8561215-CDS-P-canaliculata_contig101493:0..9721693494152.8561215-CDS-P-canaliculata_contig101493:0..972Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101493 1..972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101493.239.1prot_P-canaliculata_contig101493.239.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101493 1..972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101493.239.1

>prot_P-canaliculata_contig101493.239.1 ID=prot_P-canaliculata_contig101493.239.1|Name=mRNA_P-canaliculata_contig101493.239.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=324bp
LESLGFPKAKSLHFLGLEAVDLKISFDRLSLDPFVDCLAAAAEFTSNPNI
ALHLGHKFRVGTFGQTGNLYAYCKNLREVIPMNNRYQKIAIDAGQAEYFK
DDQGRQHMCFRPHYSDIEKYRAITDIIMGSYVTTYRWLTWGSGEDILSTH
LPYPRPKNLDAHEQIFKSKLVFDSNHTCLEFSDAAMNQVITTHDPERLLR
ARTKLDQILGLQMANKAFEAAIDVALRGAIESGQVSAEIVADRMGLSRSA
FRAKMNASGEGLRPRLDRIRKKMFVEKYRDGQNFSQIAMSLAYNDQAAMN
KAFKRWFGITPSKWSKQNATAET*
back to top

mRNA from alignment at P-canaliculata_contig101493:1..972+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101493.239.1 ID=mRNA_P-canaliculata_contig101493.239.1|Name=mRNA_P-canaliculata_contig101493.239.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=972bp|location=Sequence derived from alignment at P-canaliculata_contig101493:1..972+ (Pelvetia canaliculata dioecious)
CTGGAATCATTGGGATTCCCGAAAGCCAAATCCTTGCACTTTCTTGGACT GGAAGCGGTGGATTTAAAGATCTCTTTTGATCGCTTGAGCCTTGATCCAT TTGTAGACTGTCTGGCTGCGGCTGCAGAGTTCACATCTAATCCAAATATC GCTCTGCATTTAGGTCACAAATTTAGAGTTGGAACCTTTGGCCAGACCGG AAATTTATACGCCTATTGCAAAAATTTGCGCGAAGTAATTCCCATGAATA ATCGGTATCAGAAAATCGCAATAGACGCCGGACAGGCGGAATATTTTAAA GACGATCAAGGTAGACAGCATATGTGCTTTCGTCCGCATTATTCTGACAT AGAAAAATATCGCGCGATTACAGATATCATCATGGGGTCATATGTGACCA CCTATCGGTGGTTAACTTGGGGGTCAGGTGAAGATATTCTGTCCACCCAT TTGCCTTATCCGCGCCCTAAAAATCTTGACGCCCATGAGCAGATCTTCAA GTCTAAACTCGTTTTTGACTCTAATCATACTTGCTTAGAGTTTTCTGATG CGGCGATGAACCAGGTCATCACGACCCATGATCCCGAGCGCTTGTTGCGC GCCCGAACGAAGCTGGATCAAATCTTAGGTCTGCAAATGGCAAATAAAGC TTTTGAGGCGGCCATAGACGTCGCGCTCAGAGGCGCGATCGAGTCCGGCC AAGTGTCTGCCGAAATTGTGGCTGACCGCATGGGCCTGAGTCGGTCAGCT TTCCGCGCAAAAATGAATGCGAGCGGTGAAGGCCTTCGGCCGCGCCTCGA CCGAATTCGTAAAAAGATGTTCGTTGAGAAATATAGAGACGGGCAGAACT TTTCGCAGATCGCCATGTCTTTGGCCTATAATGACCAAGCTGCTATGAAT AAGGCTTTTAAACGTTGGTTTGGAATAACCCCCTCTAAGTGGAGCAAACA AAATGCGACAGCCGAGACTTAG
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig101493:1..972+

>mRNA_P-canaliculata_contig101493.239.1 ID=mRNA_P-canaliculata_contig101493.239.1|Name=mRNA_P-canaliculata_contig101493.239.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1944bp|location=Sequence derived from alignment at P-canaliculata_contig101493:1..972+ (Pelvetia canaliculata dioecious)
CTGGAATCATTGGGATTCCCGAAAGCCAAATCCTTGCACTTTCTTGGACT
GGAAGCGGTGGATTTAAAGATCTCTTTTGATCGCTTGAGCCTTGATCCAT
TTGTAGACTGTCTGGCTGCGGCTGCAGAGTTCACATCTAATCCAAATATC
GCTCTGCATTTAGGTCACAAATTTAGAGTTGGAACCTTTGGCCAGACCGG
AAATTTATACGCCTATTGCAAAAATTTGCGCGAAGTAATTCCCATGAATA
ATCGGTATCAGAAAATCGCAATAGACGCCGGACAGGCGGAATATTTTAAA
GACGATCAAGGTAGACAGCATATGTGCTTTCGTCCGCATTATTCTGACAT
AGAAAAATATCGCGCGATTACAGATATCATCATGGGGTCATATGTGACCA
CCTATCGGTGGTTAACTTGGGGGTCAGGTGAAGATATTCTGTCCACCCAT
TTGCCTTATCCGCGCCCTAAAAATCTTGACGCCCATGAGCAGATCTTCAA
GTCTAAACTCGTTTTTGACTCTAATCATACTTGCTTAGAGTTTTCTGATG
CGGCGATGAACCAGGTCATCACGACCCATGATCCCGAGCGCTTGTTGCGC
GCCCGAACGAAGCTGGATCAAATCTTAGGTCTGCAAATGGCAAATAAAGC
TTTTGAGGCGGCCATAGACGTCGCGCTCAGAGGCGCGATCGAGTCCGGCC
AAGTGTCTGCCGAAATTGTGGCTGACCGCATGGGCCTGAGTCGGTCAGCT
TTCCGCGCAAAAATGAATGCGAGCGGTGAAGGCCTTCGGCCGCGCCTCGA
CCGAATTCGTAAAAAGATGTTCGTTGAGAAATATAGAGACGGGCAGAACT
TTTCGCAGATCGCCATGTCTTTGGCCTATAATGACCAAGCTGCTATGAAT
AAGGCTTTTAAACGTTGGTTTGGAATAACCCCCTCTAAGTGGAGCAAACA
AAATGCGACAGCCGAGACTTAGCTGGAATCATTGGGATTCCCGAAAGCCA
AATCCTTGCACTTTCTTGGACTGGAAGCGGTGGATTTAAAGATCTCTTTT
GATCGCTTGAGCCTTGATCCATTTGTAGACTGTCTGGCTGCGGCTGCAGA
GTTCACATCTAATCCAAATATCGCTCTGCATTTAGGTCACAAATTTAGAG
TTGGAACCTTTGGCCAGACCGGAAATTTATACGCCTATTGCAAAAATTTG
CGCGAAGTAATTCCCATGAATAATCGGTATCAGAAAATCGCAATAGACGC
CGGACAGGCGGAATATTTTAAAGACGATCAAGGTAGACAGCATATGTGCT
TTCGTCCGCATTATTCTGACATAGAAAAATATCGCGCGATTACAGATATC
ATCATGGGGTCATATGTGACCACCTATCGGTGGTTAACTTGGGGGTCAGG
TGAAGATATTCTGTCCACCCATTTGCCTTATCCGCGCCCTAAAAATCTTG
ACGCCCATGAGCAGATCTTCAAGTCTAAACTCGTTTTTGACTCTAATCAT
ACTTGCTTAGAGTTTTCTGATGCGGCGATGAACCAGGTCATCACGACCCA
TGATCCCGAGCGCTTGTTGCGCGCCCGAACGAAGCTGGATCAAATCTTAG
GTCTGCAAATGGCAAATAAAGCTTTTGAGGCGGCCATAGACGTCGCGCTC
AGAGGCGCGATCGAGTCCGGCCAAGTGTCTGCCGAAATTGTGGCTGACCG
CATGGGCCTGAGTCGGTCAGCTTTCCGCGCAAAAATGAATGCGAGCGGTG
AAGGCCTTCGGCCGCGCCTCGACCGAATTCGTAAAAAGATGTTCGTTGAG
AAATATAGAGACGGGCAGAACTTTTCGCAGATCGCCATGTCTTTGGCCTA
TAATGACCAAGCTGCTATGAATAAGGCTTTTAAACGTTGGTTTGGAATAA
CCCCCTCTAAGTGGAGCAAACAAAATGCGACAGCCGAGACTTAG
back to top