prot_P-canaliculata_contig93498.23357.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig93498.23357.1
Unique Name	prot_P-canaliculata_contig93498.23357.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	232

Homology

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BLAST of mRNA_P-canaliculata_contig93498.23357.1 vs. uniprot
Match: A0A017S2H6_9EURO (H/ACA ribonucleoprotein complex subunit n=4 Tax=Aspergillus TaxID=5052 RepID=A0A017S2H6_9EURO)

HSP 1 Score: 200 bits (509), Expect = 1.500e-61
Identity = 116/157 (73.89%), Postives = 127/157 (80.89%), Query Frame = 0

Query:    1 MSFRGGGRGGDRXXRGSFRGARGDRGGASRXXXGGFQ-SYGPPAAVLELGTFLHASEGELVCTSTNAKIPYFNAPIFLENKSAIGKVDEILGPINQVFFTVKPQEGIQPASFHQGDKLFIPGDKLLPLDRFLPKPKPPPGAA---RVKKPGRGGGGM 153
            MSFRGGGRGG     G+ RG  G  GG  RXXXGGFQ S+GPPA VLE+G+F+HASEGELVC S N KIPYFNAPI+LENK+ IGKVDEILGPINQV+FTVKPQEGI   SF  GDK+FI GDKLLPL++FLPKPKPPPGAA   RV KPG  GGGM
Sbjct:    1 MSFRGGGRGG--FATGANRG--GSYGG--RXXXGGFQPSFGPPAQVLEMGSFMHASEGELVCESINPKIPYFNAPIYLENKTPIGKVDEILGPINQVYFTVKPQEGIVATSFKAGDKVFIGGDKLLPLEKFLPKPKPPPGAAKPKRVTKPGARGGGM 151

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BLAST of mRNA_P-canaliculata_contig93498.23357.1 vs. uniprot
Match: UPI000CE16FB7 (H/ACA ribonucleoprotein complex subunit 1-like n=2 Tax=Quercus suber TaxID=58331 RepID=UPI000CE16FB7)

HSP 1 Score: 199 bits (507), Expect = 3.770e-61
Identity = 109/158 (68.99%), Postives = 124/158 (78.48%), Query Frame = 0

Query:    1 MSFRGGGRGGDRXXRGSFRGARGDRGGASRXXXGGFQSYGPPAAVLELGTFLHASEGELVCTSTNAKIPYFNAPIFLENKSAIGKVDEILGPINQVFFTVKPQEGIQPASFHQGDKLFIPGDKLLPLDRFLPKPKPPPGAARVKKP------GRGGGG 152
            MSFRG G GGDR  RG F  +RG       XXX  FQSYGPPA+VLE+G F+HA+EGE+VC S N KIPYFNAPI+LENKS +GKVDEILGPINQ++FT+KPQEGIQ  SF  GDK +I GDKLLPL++FLPKPKPPPGAA+VKKP      GRGG G
Sbjct:    1 MSFRGRG-GGDRGGRGGF--SRGGDRXXXXXXXXXFQSYGPPASVLEMGEFMHATEGEMVCNSINPKIPYFNAPIYLENKSPVGKVDEILGPINQLYFTIKPQEGIQAGSFKAGDKFYIGGDKLLPLEKFLPKPKPPPGAAKVKKPRGAGVGGRGGRG 155

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BLAST of mRNA_P-canaliculata_contig93498.23357.1 vs. uniprot
Match: A0A3M7NP48_9EURO (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Chaetothyriales sp. CBS 134916 TaxID=2249418 RepID=A0A3M7NP48_9EURO)

HSP 1 Score: 196 bits (497), Expect = 8.720e-59
Identity = 91/118 (77.12%), Postives = 103/118 (87.29%), Query Frame = 0

Query:   35 GFQSYGPPAAVLELGTFLHASEGELVCTSTNAKIPYFNAPIFLENKSAIGKVDEILGPINQVFFTVKPQEGIQPASFHQGDKLFIPGDKLLPLDRFLPKPKPPPGAARVKKPGRGGGG 152
            GFQSYGPPA VLELGTFLHA+EGE+VC STN K+P+FNAPI+LENKS +GKVDEILGPINQV+FT+KPQEGIQ  SF  GDK ++ GDKLLPL+RFLPKPKPPPGAA+ KK G  G G
Sbjct:   89 GFQSYGPPAEVLELGTFLHATEGEMVCESTNVKVPFFNAPIYLENKSQVGKVDEILGPINQVYFTIKPQEGIQATSFKAGDKFYVGGDKLLPLERFLPKPKPPPGAAKAKKVGLQGRG 206

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BLAST of mRNA_P-canaliculata_contig93498.23357.1 vs. uniprot
Match: A0A4U0VFG0_9PEZI (H/ACA ribonucleoprotein complex subunit n=2 Tax=Friedmanniomyces TaxID=329881 RepID=A0A4U0VFG0_9PEZI)

HSP 1 Score: 193 bits (491), Expect = 1.090e-58
Identity = 92/125 (73.60%), Postives = 104/125 (83.20%), Query Frame = 0

Query:   34 GGFQSYGPPAAVLELGTFLHASEGELVCTSTNAKIPYFNAPIFLENKSAIGKVDEILGPINQVFFTVKPQEGIQPASFHQGDKLFIPGDKLLPLDRFLPKPKPPPGAARVKKP------GRGGGG 152
            GGFQS+GPP  VLE+G FLHA+EGE+VC S N KIPYFNAPI+LENK+ +GKVDEILGP+NQV+FT+KPQEGIQ  SF  GDK +I GDKLLPLDRFLPKPKPPPGA +VKKP      GRGG G
Sbjct:   36 GGFQSFGPPDQVLEMGNFLHATEGEMVCASINTKIPYFNAPIYLENKTPVGKVDEILGPLNQVYFTIKPQEGIQATSFKAGDKFYIGGDKLLPLDRFLPKPKPPPGAPKVKKPRGAGFAGRGGRG 160

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BLAST of mRNA_P-canaliculata_contig93498.23357.1 vs. uniprot
Match: F9XME9_ZYMTI (H/ACA ribonucleoprotein complex subunit n=6 Tax=Mycosphaerellaceae TaxID=93133 RepID=F9XME9_ZYMTI)

HSP 1 Score: 193 bits (491), Expect = 1.090e-58
Identity = 105/153 (68.63%), Postives = 116/153 (75.82%), Query Frame = 0

Query:    1 MSFRGGGRGGDRXXRGSFRGARGDRGGASRXXXGGFQSYGPPAAVLELGTFLHASEGELVCTSTNAKIPYFNAPIFLENKSAIGKVDEILGPINQVFFTVKPQEGIQPASFHQGDKLFIPGDKLLPLDRFLPKPKPPPGAARVKKPGRGGGGM 153
            MSFRGG RGG        RG  G       XXXG  QSYGPP  V E+G+FLHA+EGELVC S N KIPYFNAPI+LENK+ IGKVDEILGP+NQVFFT+KPQEGIQ  SF  GDK +I GDKLLPL++FLPKPKPPPGA +VKKP RG GG 
Sbjct:    1 MSFRGGSRGGFGGGDRGXRGGGGFXXXXXXXXXGFQQSYGPPDTVYEMGSFLHATEGELVCESINVKIPYFNAPIYLENKTPIGKVDEILGPLNQVFFTIKPQEGIQATSFKSGDKFYIGGDKLLPLEKFLPKPKPPPGAPKVKKP-RGAGGF 152

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BLAST of mRNA_P-canaliculata_contig93498.23357.1 vs. uniprot
Match: W2S9Q5_9EURO (H/ACA ribonucleoprotein complex subunit n=1 Tax=Cyphellophora europaea CBS 101466 TaxID=1220924 RepID=W2S9Q5_9EURO)

HSP 1 Score: 191 bits (485), Expect = 4.140e-58
Identity = 91/120 (75.83%), Postives = 104/120 (86.67%), Query Frame = 0

Query:   34 GGFQS-YGPPAAVLELGTFLHASEGELVCTSTNAKIPYFNAPIFLENKSAIGKVDEILGPINQVFFTVKPQEGIQPASFHQGDKLFIPGDKLLPLDRFLPKPKPPPGAARVKKPGRGGGG 152
            GGFQS YGPPA VLE+GTF+H SEGE+VC STN KIPYFNAP++LENK+ IGKVDEILGPINQV+FT+KPQEGIQ  SF  GDK +I GDKLLPL++FLPKPK PPGA++VKKPG  G G
Sbjct:    8 GGFQSNYGPPAQVLEIGTFMHPSEGEMVCESTNPKIPYFNAPVYLENKTTIGKVDEILGPINQVYFTIKPQEGIQATSFKAGDKFYIGGDKLLPLEKFLPKPKGPPGASKVKKPGLQGRG 127

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BLAST of mRNA_P-canaliculata_contig93498.23357.1 vs. uniprot
Match: E5R037_ARTGP (H/ACA ribonucleoprotein complex subunit n=15 Tax=Arthrodermataceae TaxID=34384 RepID=E5R037_ARTGP)

HSP 1 Score: 191 bits (484), Expect = 9.140e-58
Identity = 101/153 (66.01%), Postives = 116/153 (75.82%), Query Frame = 0

Query:    1 MSFRGGGRG-GDRXXRGSFRGARGDRGGASRXXXGGFQSYGPPAAVLELGTFLHASEGELVCTSTNAKIPYFNAPIFLENKSAIGKVDEILGPINQVFFTVKPQEGIQPASFHQGDKLFIPGDKLLPLDRFLPKPKPPPGAARVKKPGRGGGG 152
            MSFRG  RG G    RG F GARG RGG         QS+GPPA VLE+GTF+H+ EGE+VC S N KIPYFNAPI+LENK+ +GKVDE+LGPINQV+FT+KPQEGI P SF  GDK +I GDKLLPL++FLPKPKPPPGA + KK G  G G
Sbjct:    1 MSFRGAPRGRGTGANRGGF-GARGGRGGMQ-------QSFGPPATVLEMGTFMHSCEGEMVCESINPKIPYFNAPIYLENKTPVGKVDEVLGPINQVYFTIKPQEGIVPTSFKTGDKFYIGGDKLLPLEKFLPKPKPPPGAPKPKKIGGAGRG 145

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BLAST of mRNA_P-canaliculata_contig93498.23357.1 vs. uniprot
Match: A0A0D2H704_XYLBA (H/ACA ribonucleoprotein complex subunit n=2 Tax=Cladophialophora TaxID=82105 RepID=A0A0D2H704_XYLBA)

HSP 1 Score: 191 bits (484), Expect = 1.210e-57
Identity = 87/117 (74.36%), Postives = 103/117 (88.03%), Query Frame = 0

Query:   37 QSYGPPAAVLELGTFLHASEGELVCTSTNAKIPYFNAPIFLENKSAIGKVDEILGPINQVFFTVKPQEGIQPASFHQGDKLFIPGDKLLPLDRFLPKPKPPPGAARVKKPGRGGGGM 153
            QS+GPPA V E+GTF+HA+EGE+VC S NAKIP+FNAPI+LENK+ IGKVDEILGPINQV+FT+KPQEGIQ  SF +GDK +I GDKLLPL++FLPKPKPPPGAA+V+KP    GGM
Sbjct:   36 QSFGPPAQVFEMGTFMHATEGEMVCESINAKIPFFNAPIYLENKTTIGKVDEILGPINQVYFTIKPQEGIQATSFKKGDKFYIGGDKLLPLEKFLPKPKPPPGAAKVRKPAGAQGGM 152

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BLAST of mRNA_P-canaliculata_contig93498.23357.1 vs. uniprot
Match: M3CYK5_SPHMS (H/ACA ribonucleoprotein complex subunit n=10 Tax=Mycosphaerellaceae TaxID=93133 RepID=M3CYK5_SPHMS)

HSP 1 Score: 189 bits (481), Expect = 3.340e-57
Identity = 101/142 (71.13%), Postives = 112/142 (78.87%), Query Frame = 0

Query:    1 MSFRGGGRGG--DRXXRGSFRGARGDRGGASRXXXGGFQSYGPPAAVLELGTFLHASEGELVCTSTNAKIPYFNAPIFLENKSAIGKVDEILGPINQVFFTVKPQEGIQPASFHQGDKLFIPGDKLLPLDRFLPKPKPPPGA 140
            MSFRGGGRGG  DR  RG F      RGGA  XXX   QSYGPP  V E+GTFLHA+EGE+VC S N KIPYFNAPI+LENK+ +GKVDEILGP+NQV FT+KPQEGIQ  SF  GDK +I GDKLLPL++FLPKPKPPPGA
Sbjct:    1 MSFRGGGRGGFGDRGGRGGF------RGGAXXXXXXFQQSYGPPDTVYEMGTFLHATEGEMVCESINVKIPYFNAPIYLENKTPVGKVDEILGPLNQVHFTIKPQEGIQATSFKSGDKFYIGGDKLLPLEKFLPKPKPPPGA 136

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BLAST of mRNA_P-canaliculata_contig93498.23357.1 vs. uniprot
Match: A0A4U0WL38_9PEZI (H/ACA ribonucleoprotein complex subunit n=1 Tax=Friedmanniomyces simplex TaxID=329884 RepID=A0A4U0WL38_9PEZI)

HSP 1 Score: 190 bits (483), Expect = 4.880e-57
Identity = 90/118 (76.27%), Postives = 102/118 (86.44%), Query Frame = 0

Query:   34 GGFQSYGPPAAVLELGTFLHASEGELVCTSTNAKIPYFNAPIFLENKSAIGKVDEILGPINQVFFTVKPQEGIQPASFHQGDKLFIPGDKLLPLDRFLPKPKPPPGAARVKKPGRGGG 151
            GGFQSYGPP  VLE+G FLHA+EGE+VC+S N KIPYFNAPI+LENK+ +GKVDEILGP+NQV+FT+KPQEGIQ  SF  GDK +I GDKLLPLDRFLPKPKP PGA +VKKP RG G
Sbjct:   36 GGFQSYGPPDQVLEMGNFLHATEGEMVCSSINTKIPYFNAPIYLENKTPVGKVDEILGPLNQVYFTIKPQEGIQATSFKAGDKFYIGGDKLLPLDRFLPKPKPLPGAPKVKKP-RGAG 152

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig93498.23357.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig93498.23357.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A017S2H6_9EURO	1.500e-61	73.89	H/ACA ribonucleoprotein complex subunit n=4 Tax=As...	[more]
UPI000CE16FB7	3.770e-61	68.99	H/ACA ribonucleoprotein complex subunit 1-like n=2...	[more]
A0A3M7NP48_9EURO	8.720e-59	77.12	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A4U0VFG0_9PEZI	1.090e-58	73.60	H/ACA ribonucleoprotein complex subunit n=2 Tax=Fr...	[more]
F9XME9_ZYMTI	1.090e-58	68.63	H/ACA ribonucleoprotein complex subunit n=6 Tax=My...	[more]
W2S9Q5_9EURO	4.140e-58	75.83	H/ACA ribonucleoprotein complex subunit n=1 Tax=Cy...	[more]
E5R037_ARTGP	9.140e-58	66.01	H/ACA ribonucleoprotein complex subunit n=15 Tax=A...	[more]
A0A0D2H704_XYLBA	1.210e-57	74.36	H/ACA ribonucleoprotein complex subunit n=2 Tax=Cl...	[more]
M3CYK5_SPHMS	3.340e-57	71.13	H/ACA ribonucleoprotein complex subunit n=10 Tax=M...	[more]
A0A4U0WL38_9PEZI	4.880e-57	76.27	H/ACA ribonucleoprotein complex subunit n=1 Tax=Fr...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230		coord: 41..132 e-value: 1.7E-38 score: 132.3
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 35..131 e-value: 2.1E-34 score: 118.5
None	No IPR available	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 1..225
None	No IPR available	PRODOM	PD020235		coord: 47..130 e-value: 3.0E-31 score: 338.0
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 47..119

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig93498	contig	P-canaliculata_contig93498:143..900 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig93498.23357.1	mRNA_P-canaliculata_contig93498.23357.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig93498 143..900 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig93498.23357.1 ID=prot_P-canaliculata_contig93498.23357.1|Name=mRNA_P-canaliculata_contig93498.23357.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=232bp
MSFRGGGRGGDRGGRGSFRGARGDRGGASRGGRGGFQSYGPPAAVLELGT
FLHASEGELVCTSTNAKIPYFNAPIFLENKSAIGKVDEILGPINQVFFTV
KPQEGIQPASFHQGDKLFIPGDKLLPLDRFLPKPKPPPGAARVKKPGRGG
GGMRGGRGGRGAPRGRGAPRGRGGPPGRGGGRGFGGGGSRGGFGGRGRGG
PPGRGGGRGFGGGGSRGGFGGRGRGAPRGRY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR038664	Gar1/Naf1_Cbf5-bd_sf
IPR007504	H/ACA_rnp_Gar1/Naf1
IPR009000	Transl_B-barrel_sf