prot_P-canaliculata_contig9262.23250.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9262.23250.1
Unique Nameprot_P-canaliculata_contig9262.23250.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length153
Homology
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BLAST of mRNA_P-canaliculata_contig9262.23250.1 vs. uniprot
Match: D8LLT3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT3_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 3.810e-21
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 0 
Query:   48 WDSSPFHLEAVTDNGLGLTAKACAERYCHVGINGLDLWLSLEEVCLVAPPSQPYLVEGTDHRAGVESSV------GRWSPVMSATLCALVLALCTLLGYRVG 143
            WDSSPF+L ++TDN LG+ AK+C++++C  G++GLDLW+S EEVC V P  QPY        +G  + +      G W PV+   LCA +     + G+ +G
Sbjct:   65 WDSSPFNLGSITDNNLGVLAKSCSDKFCRAGVDGLDLWVSFEEVCTVMP--QPYFAARLGDESGATAGLPASGSDGYWHPVIVGALCAAIGVAGVIGGFSLG 164
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BLAST of mRNA_P-canaliculata_contig9262.23250.1 vs. uniprot
Match: A0A6H5LC22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC22_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.430e-15
Identity = 28/44 (63.64%), Postives = 39/44 (88.64%), Query Frame = 0 
Query:   47 SWDSSPFHLEAVTDNGLGLTAKACAERYCHVGINGLDLWLSLEE 90
            SWDSSPFHL+++TDN LGL AK+C++++C  G++GLDLW+S EE
Sbjct:   61 SWDSSPFHLDSITDNNLGLLAKSCSDKFCQAGVDGLDLWVSFEE 104
[Close]
BLAST of mRNA_P-canaliculata_contig9262.23250.1 vs. uniprot
Match: D8LLS8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLS8_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 3.790e-13
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 0 
Query:   61 NGLGLTAKACAERYCHVGINGLDLWLSLEEVCLVAPPSQPYLVEGTD------HRAGVESSV-------GRWSPVMSATLCALVLALCTLLGYR----VGAGTKPYFRV 152
            N LGL A+ACA  +C +G++ LDLWLSLEEVC     +QP L  G +      H  G  ++        G WS   +A +C  VLA+  L+G+R    VG  TK  + V
Sbjct:   50 NNLGLLAQACASSFCGLGVDALDLWLSLEEVCRTGASNQPSLEGGGEMEFGGVHGGGWGTAAAEGGGRGGDWSASSTALVCGGVLAVSALVGFRSGIKVGTWTKEGYPV 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9262.23250.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLT3_ECTSI3.810e-2141.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LC22_9PHAE3.430e-1563.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLS8_ECTSI3.790e-1339.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..118
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 141..152
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..12
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 119..140
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.666
NoneNo IPR availableTMHMMTMhelixcoord: 122..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9262contigP-canaliculata_contig9262:6253..9625 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9262.23250.1mRNA_P-canaliculata_contig9262.23250.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9262 6253..9645 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9262.23250.1 ID=prot_P-canaliculata_contig9262.23250.1|Name=mRNA_P-canaliculata_contig9262.23250.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=153bp
MRLLLIMVAATLMPHPCVIAYYQSAKQHSIATAGTHPSSDTSTFGTSWDS
SPFHLEAVTDNGLGLTAKACAERYCHVGINGLDLWLSLEEVCLVAPPSQP
YLVEGTDHRAGVESSVGRWSPVMSATLCALVLALCTLLGYRVGAGTKPYF
RV*
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