prot_P-canaliculata_contig9185.23163.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9185.23163.1
Unique Nameprot_P-canaliculata_contig9185.23163.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length186
Homology
BLAST of mRNA_P-canaliculata_contig9185.23163.1 vs. uniprot
Match: U1GSH0_ENDPU (Integrase catalytic domain-containing protein n=1 Tax=Endocarpon pusillum (strain Z07020 / HMAS-L-300199) TaxID=1263415 RepID=U1GSH0_ENDPU)

HSP 1 Score: 188 bits (477), Expect = 1.910e-52
Identity = 98/187 (52.41%), Postives = 134/187 (71.66%), Query Frame = 0
Query:    1 EGSVYITSHVDDYIVTGDNKAGIKKAKESIKQRFKMKDLGACKTYLGMEVSRDREGRQIKLTQTAYARKLVEEAGMTDSRSVATPMEAGTQIEPAEK-EPVRMEHFRSLVGRIQWLAVVTRPDIAHAASQLGSVATKPTEGAWNALKHLLRYLKGSPGVGLLFGGAEIGSAESMKDKLIGYSDANWA 186
            EG V+I+SHVDDY++TG +K G+++ K ++ +RFKMKD+GA  +YLGME+ R  +G  IKLTQ  Y  +L++E GM + +S  TP+EAG +++PAE  + VR E +R LVG++QW AVVTRPDI+H  S+L SV+  PT+ AW ALK LLRYL+G+   GL +GG         K +L GYSDANWA
Sbjct:  448 EGVVFISSHVDDYLITGSDKQGVQELKRAMAKRFKMKDMGAAVSYLGMEIERKEDG-VIKLTQERYLTQLLKETGMWNVKSKPTPIEAGLELKPAEAGKAVRQEDYRRLVGKVQWPAVVTRPDISHTVSRLASVSNTPTKEAWGALKRLLRYLRGTLRRGLRYGG---------KSELRGYSDANWA 624          
BLAST of mRNA_P-canaliculata_contig9185.23163.1 vs. uniprot
Match: I6ZTT9_PHAVU (Integrase core domain containing protein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=I6ZTT9_PHAVU)

HSP 1 Score: 136 bits (342), Expect = 1.090e-33
Identity = 74/186 (39.78%), Postives = 116/186 (62.37%), Query Frame = 0
Query:    2 GSVYITSHVDDYIVTGDNKAGIKKAKESIKQRFKMKDLGACKTYLGMEVSRDREGRQIKLTQTAYARKLVEEAGMTDSRSVATPMEAGTQIEPAEKEPVR-MEHFRSLVGRIQWLAVVTRPDIAHAASQLGSVATKPTEGAWNALKHLLRYLKGSPGVGLLFGGAEIGSAESMKDKLIGYSDANWA 186
            G +Y+  +VDD ++TG +  GI + K+ + Q F+ KDLG  + +LG+EV++   G  I ++Q  YA  ++EE G+ +S+SV TPM+   ++ P + EP+   E +R LVG++ +L V TRPDI+ A S +      P E  WNA+  +L+Y+KGSPG GLL+G        +   K++ YSDA+WA
Sbjct: 1063 GCIYLVVYVDDIVLTGSDHHGISQVKQHLCQNFQTKDLGKLRYFLGIEVAQSNTG--IVISQRKYALDILEEIGLMNSKSVDTPMDPNVKLLPNQGEPLSDPEKYRRLVGKLNYLTV-TRPDISFAVSVVSQFLNSPCEDHWNAVIRILKYIKGSPGKGLLYG-------HNNHTKVVCYSDADWA 1238          
BLAST of mRNA_P-canaliculata_contig9185.23163.1 vs. uniprot
Match: A0A2K3LF16_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LF16_TRIPR)

HSP 1 Score: 133 bits (334), Expect = 1.040e-32
Identity = 69/184 (37.50%), Postives = 112/184 (60.87%), Query Frame = 0
Query:    4 VYITSHVDDYIVTGDNKAGIKKAKESIKQRFKMKDLGACKTYLGMEVSRDREGRQIKLTQTAYARKLVEEAGMTDSRSVATPMEAGTQIEPAEKEPV-RMEHFRSLVGRIQWLAVVTRPDIAHAASQLGSVATKPTEGAWNALKHLLRYLKGSPGVGLLFGGAEIGSAESMKDKLIGYSDANWA 186
            +Y+  +VDD ++TGD++ GIK+ K+ +   F+ KDLG  + +LG+EV++ + G  I ++Q  YA  ++EE GM D + V TPM+   ++ P + EP      +R LVG++ +L + TRPD+A   S +      P +  WNA+  +LRY+KGSPG GL++        +     ++GYSDA+WA
Sbjct:  400 IYLVVYVDDIVITGDDEEGIKQLKQHLFTHFQTKDLGRLRYFLGIEVAQSKSG--IAISQRKYALDILEETGMLDCKPVDTPMDPNVKLIPNQGEPYPNPGQYRRLVGKLNYLTM-TRPDLAFPVSVISQFLNSPCDSHWNAVVRILRYIKGSPGKGLIY-------TDRGHTNILGYSDADWA 573          
BLAST of mRNA_P-canaliculata_contig9185.23163.1 vs. uniprot
Match: A0A151TFN8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TFN8_CAJCA)

HSP 1 Score: 127 bits (319), Expect = 8.420e-32
Identity = 68/184 (36.96%), Postives = 111/184 (60.33%), Query Frame = 0
Query:    4 VYITSHVDDYIVTGDNKAGIKKAKESIKQRFKMKDLGACKTYLGMEVSRDREGRQIKLTQTAYARKLVEEAGMTDSRSVATPMEAGTQIEPAEKEPVRME-HFRSLVGRIQWLAVVTRPDIAHAASQLGSVATKPTEGAWNALKHLLRYLKGSPGVGLLFGGAEIGSAESMKDKLIGYSDANWA 186
            +Y+  +VDD ++TGD++ GIK  K+ + + F+ KDLG  + +LG+EV++ + G  I ++Q  YA  ++EE G+TD + V TPM+   ++ P + EP      +R LVG++ +L + TRPDI+   S +      P E  W A+  +LRY+K SPG GL++        +     ++GYSDA+WA
Sbjct:   66 IYLVVYVDDIVITGDDQEGIKALKQHLFKHFQTKDLGPLRYFLGIEVAQSKSG--IAISQRKYALDILEETGLTDCKPVDTPMDPNVKLMPNQGEPYPDPGRYRRLVGKLNYLTM-TRPDISFPVSVVSQFLNSPCESHWLAVVRILRYIKRSPGKGLVYN-------DRGHTNIVGYSDADWA 239          
BLAST of mRNA_P-canaliculata_contig9185.23163.1 vs. uniprot
Match: A0A151SJD0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SJD0_CAJCA)

HSP 1 Score: 127 bits (319), Expect = 1.140e-31
Identity = 68/184 (36.96%), Postives = 111/184 (60.33%), Query Frame = 0
Query:    4 VYITSHVDDYIVTGDNKAGIKKAKESIKQRFKMKDLGACKTYLGMEVSRDREGRQIKLTQTAYARKLVEEAGMTDSRSVATPMEAGTQIEPAEKEPVRME-HFRSLVGRIQWLAVVTRPDIAHAASQLGSVATKPTEGAWNALKHLLRYLKGSPGVGLLFGGAEIGSAESMKDKLIGYSDANWA 186
            +Y+  +VDD ++TGD++ GIK  K+ + + F+ KDLG  + +LG+EV++ + G  I ++Q  YA  ++EE G+TD + V TPM+   ++ P + EP      +R LVG++ +L + TRPDI+   S +      P E  W A+  +LRY+K SPG GL++        +     ++GYSDA+WA
Sbjct:  174 IYLVVYVDDIVITGDDQEGIKALKQHLFKHFQTKDLGPLRYFLGIEVAQSKSG--IAISQRKYALDILEETGLTDCKPVDTPMDPNVKLMPNQGEPYPDPGRYRRLVGKLNYLTM-TRPDISFPVSVVSQFLNSPCESHWLAVVRILRYIKRSPGKGLVYN-------DRGHTNIVGYSDADWA 347          
BLAST of mRNA_P-canaliculata_contig9185.23163.1 vs. uniprot
Match: A0A151TW72_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TW72_CAJCA)

HSP 1 Score: 127 bits (319), Expect = 1.250e-31
Identity = 68/184 (36.96%), Postives = 111/184 (60.33%), Query Frame = 0
Query:    4 VYITSHVDDYIVTGDNKAGIKKAKESIKQRFKMKDLGACKTYLGMEVSRDREGRQIKLTQTAYARKLVEEAGMTDSRSVATPMEAGTQIEPAEKEPVRME-HFRSLVGRIQWLAVVTRPDIAHAASQLGSVATKPTEGAWNALKHLLRYLKGSPGVGLLFGGAEIGSAESMKDKLIGYSDANWA 186
            +Y+  +VDD ++TGD++ GIK  K+ + + F+ KDLG  + +LG+EV++ + G  I ++Q  YA  ++EE G+TD + V TPM+   ++ P + EP      +R LVG++ +L + TRPDI+   S +      P E  W A+  +LRY+K SPG GL++        +     ++GYSDA+WA
Sbjct:   91 IYLVVYVDDIVITGDDQEGIKALKQHLFKHFQTKDLGPLRYFLGIEVAQSKSG--IAISQRKYALDILEETGLTDCKPVDTPMDPNVKLMPNQGEPYPDPGRYRRLVGKLNYLTM-TRPDISFPVSVVSQFLNSPCESHWLAVVRILRYIKRSPGKGLVYN-------DRGHTNIVGYSDADWA 264          
BLAST of mRNA_P-canaliculata_contig9185.23163.1 vs. uniprot
Match: A5C615_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5C615_VITVI)

HSP 1 Score: 124 bits (311), Expect = 1.770e-31
Identity = 64/184 (34.78%), Postives = 111/184 (60.33%), Query Frame = 0
Query:    4 VYITSHVDDYIVTGDNKAGIKKAKESIKQRFKMKDLGACKTYLGMEVSRDREGRQIKLTQTAYARKLVEEAGMTDSRSVATPMEAGTQIEPAEKEPVRME-HFRSLVGRIQWLAVVTRPDIAHAASQLGSVATKPTEGAWNALKHLLRYLKGSPGVGLLFGGAEIGSAESMKDKLIGYSDANWA 186
            +Y+  +VDD ++TG ++ GI+K K+ +   F+ KDLG  K +LG+E+++   G  + L+Q  YA  ++EE GM D + V TPM+   ++ P + EP+ +   +R LVG++ +L + TRPDI+   S +      P +  W+A+  +LRY+K +PG G+L+             +++GY+DA+WA
Sbjct:   84 IYLVVYVDDIVITGSDQDGIQKLKQHLFTHFQTKDLGKLKYFLGIEIAQSSSG--VVLSQRKYALDILEETGMLDCKPVDTPMDPNVKLVPGQGEPLGVPGRYRRLVGKLNYLTI-TRPDISFPVSVVSQFLQSPCDSHWDAVIRILRYIKSTPGQGVLY-------ENRGHTQVVGYTDADWA 257          
BLAST of mRNA_P-canaliculata_contig9185.23163.1 vs. uniprot
Match: A0A5E4G4P6_PRUDU (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G4P6_PRUDU)

HSP 1 Score: 124 bits (311), Expect = 2.890e-31
Identity = 68/190 (35.79%), Postives = 107/190 (56.32%), Query Frame = 0
Query:    4 VYITSHVDDYIVTGDNKAGIKKAKESIKQRFKMKDLGACKTYLGMEVSRDREGRQIKLTQTAYARKLVEEAGMTDSRSVATPMEAGTQIEPA-------EKEPVRMEHFRSLVGRIQWLAVVTRPDIAHAASQLGSVATKPTEGAWNALKHLLRYLKGSPGVGLLFGGAEIGSAESMKDKLIGYSDANWA 186
            + +  +VDD ++ G N   I K K+ + + F MKDLG  K  LGM +SRDR+ R+++L+Q +Y  K+++   M  ++ V+TP  +  ++          EKE + M  + S VG + +  + TRPDI HA   +    +KP    WNA+K +LRYL+G+  + L FGG         K +LIGY+DA+ A
Sbjct:   86 IILLLYVDDMLIVGQNSDKISKLKKELSKSFAMKDLGPAKRILGMSISRDRKNRKLRLSQESYIEKVLKRFNMDKAKPVSTPFPSHFKLSSKQSPTCEKEKENMAMVPYSSAVGSLMYAMICTRPDITHAVGVVSRFLSKPGREHWNAVKWILRYLRGTSKMSLCFGGG--------KPELIGYTDADMA 267          
BLAST of mRNA_P-canaliculata_contig9185.23163.1 vs. uniprot
Match: A0A364MRM8_9PLEO (Gag-pol polyprotein n=1 Tax=Stemphylium lycopersici TaxID=183478 RepID=A0A364MRM8_9PLEO)

HSP 1 Score: 128 bits (322), Expect = 5.250e-31
Identity = 73/184 (39.67%), Postives = 107/184 (58.15%), Query Frame = 0
Query:    6 ITSHVDDYIVTGDNKAGIKKAKESIKQRFKMKDLGACKTYLGMEVSRD--REGRQIKLTQTAYARKLVEEAGMTDSRSVATPMEAGTQIEPAEKEPVRMEH--FRSLVGRIQWLAVVTRPDIAHAASQLGSVATKPTEGAWNALKHLLRYLKGSPGVGLLFGGAEIGSAESMKDKLIGYSDANW 185
            I ++VDD ++ G ++  I   K ++ + FKM DLG    YLG++V R+    G ++KLTQ AYA K++   GM D   VATPM+    +EP+++     +   ++  VG + +L + TRPDIA+A SQLG  A  P++    ALK LLRYLKG+   GL+         +   D L GY+DANW
Sbjct: 1063 IAAYVDDLLILGKDQETIASIKSALSEHFKMSDLGPVAHYLGVKVIREDTSRGSRMKLTQRAYAEKVLRTFGMADCTPVATPMDENLVLEPSKEASDSQDRKWYQRAVGSLMYLMLCTRPDIAYAVSQLGRFAANPSQKHHAALKRLLRYLKGTSDYGLVI------DTQGQPDVLTGYTDANW 1240          
BLAST of mRNA_P-canaliculata_contig9185.23163.1 vs. uniprot
Match: A5B3W4_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Vitis vinifera TaxID=29760 RepID=A5B3W4_VITVI)

HSP 1 Score: 122 bits (307), Expect = 5.300e-31
Identity = 64/184 (34.78%), Postives = 110/184 (59.78%), Query Frame = 0
Query:    4 VYITSHVDDYIVTGDNKAGIKKAKESIKQRFKMKDLGACKTYLGMEVSRDREGRQIKLTQTAYARKLVEEAGMTDSRSVATPMEAGTQIEPAEKEPVRME-HFRSLVGRIQWLAVVTRPDIAHAASQLGSVATKPTEGAWNALKHLLRYLKGSPGVGLLFGGAEIGSAESMKDKLIGYSDANWA 186
            +Y+  +VDD ++TG ++ GI+K K+ +   F+ KDLG  K +LG+E+++   G  + L+Q  YA  ++EE GM D + V TPM+   ++ P + EP+     +R LVG++ +L + TRPDI+   S +      P +  W+A+  +LRY+K +PG G+L+             +++GY+DA+WA
Sbjct:   21 IYLVVYVDDIVITGSDQDGIQKLKQHLFTHFQTKDLGKLKYFLGIEIAQSSSG--VVLSQRKYALDILEETGMLDCKPVDTPMDPNVKLVPGQGEPLGDPGRYRRLVGKLNYLTI-TRPDISFPVSVVSQFLQSPCDSHWDAVIRILRYIKSTPGQGVLY-------ZNRGHTQVVGYTDADWA 194          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9185.23163.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
U1GSH0_ENDPU1.910e-5252.41Integrase catalytic domain-containing protein n=1 ... [more]
I6ZTT9_PHAVU1.090e-3339.78Integrase core domain containing protein n=1 Tax=P... [more]
A0A2K3LF16_TRIPR1.040e-3237.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A151TFN8_CAJCA8.420e-3236.96Retrovirus-related Pol polyprotein from transposon... [more]
A0A151SJD0_CAJCA1.140e-3136.96Retrovirus-related Pol polyprotein from transposon... [more]
A0A151TW72_CAJCA1.250e-3136.96Retrovirus-related Pol polyprotein from transposon... [more]
A5C615_VITVI1.770e-3134.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E4G4P6_PRUDU2.890e-3135.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A364MRM8_9PLEO5.250e-3139.67Gag-pol polyprotein n=1 Tax=Stemphylium lycopersic... [more]
A5B3W4_VITVI5.300e-3134.78Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..86
e-value: 1.2E-17
score: 64.4
NoneNo IPR availablePANTHERPTHR11439:SF257coord: 6..186
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 4..165
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 6..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9185contigP-canaliculata_contig9185:648..1205 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9185.23163.1mRNA_P-canaliculata_contig9185.23163.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9185 648..1205 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9185.23163.1 ID=prot_P-canaliculata_contig9185.23163.1|Name=mRNA_P-canaliculata_contig9185.23163.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=186bp
EGSVYITSHVDDYIVTGDNKAGIKKAKESIKQRFKMKDLGACKTYLGMEV
SRDREGRQIKLTQTAYARKLVEEAGMTDSRSVATPMEAGTQIEPAEKEPV
RMEHFRSLVGRIQWLAVVTRPDIAHAASQLGSVATKPTEGAWNALKHLLR
YLKGSPGVGLLFGGAEIGSAESMKDKLIGYSDANWA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like