mRNA_P-canaliculata_contig101389.231.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101389.231.1
Unique NamemRNA_P-canaliculata_contig101389.231.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5KCR3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR3_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.380e-21
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 3 
Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH------GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
            MYN+ P+PPG+E I +GN   + VEC+G++++ FH      G+ D  + L DV  VP + FNLYSLH  Q+TH I+ D  G H+ G  L+F  S  G YL ATRLP
Sbjct:    1 MYNISPVPPGKEYIRVGNGAHLRVECVGSVNLAFHMAGGRSGEVDFCVQLTDVYVVPGISFNLYSLHQTQKTHRIMLDERGVHLFGGRLSFAYSDIGCYLSATRLP 106
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BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.410e-18
Identity = 48/106 (45.28%), Postives = 66/106 (62.26%), Query Frame = 3 
Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH---GKS---DQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
            MYN+ P+PPG+E I +GN   + VEC+G++++ FH   G+S   D  + L DV  VP + FNL+SLH  Q+ H I+ D  G H+ G  L+F  S  G  L ATRLP
Sbjct:    1 MYNISPVPPGKEYIRVGNGAHLRVECVGSVNLAFHMAGGRSREVDFCVQLTDVYVVPGISFNLFSLHQTQKKHRIMLDERGVHLFGGRLSFAYSDIGCSLSATRLP 106
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BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.110e-16
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 3 
Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
            M+++RP+P G+E I +GN   + V+C+G +++ FH     G+ D R+ + DV  VP + FNL+SLH  QR   IV D +G H+    L+F  S  G  L ATRLP
Sbjct:  657 MFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGRLSFAYSDVGCSLWATRLP 761
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BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JW31_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW31_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 6.260e-16
Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = 3 
Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLPACTKGARRRQGEMRATNVLRELRHPISPPP 665
            M++M+P+P GRE I +GN   + V+C+G+ ++ FH     G++D  + + DV  VP + FNL+SLH  QR   I  D +G H+    L+F  S  G  L ATRLP    G+    G      V      P +PPP
Sbjct:    1 MFDMKPIPAGREFIQVGNSAYLRVQCVGSNNMTFHMPDPSGEADFCVQISDVYVVPGITFNLFSLHHTQRRQRITLDDNGVHLFNGQLSFAYSDVGCSLWATRLPPTCTGSVVTLGPDALPRV-----SPQAPPP 130
[Close]
BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JX85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX85_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.660e-15
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 3 
Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
            M+++RP+P G+E I +GN   + V+C+GT+++ FH     G+ D  + + DV  VP + FNL+SLH  QR   IV D +G H+    + F  S  G  L ATRLP
Sbjct:    1 MFDLRPVPTGKEYIQVGNGACLRVQCLGTVNMAFHMQDQGGERDVCVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGKIFFAYSDVGCSLWATRLP 105
[Close]
BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.300e-15
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 3 
Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
            M+++RP+P G+E I +GN   + V+C+GT+++ FH     G+ D  + + DV  VP + FNL+SLH +QR   IV D +G H+     +F  S  G  L ATRLP
Sbjct:  355 MFDLRPVPTGKEYIQVGNGAYLRVQCLGTVNMAFHMQDQGGERDFCVQMSDVYVVPGITFNLFSLHHMQRKQRIVLDETGVHLFDGKRSFAYSDVGCSLWATRLP 459
[Close]
BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.340e-15
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 3 
Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
            M+++RP+P G+E I +GN   + V+C+G +++ FH     G+ D  + + DV  VP + FNL+SLH  QR   IV D +G H+    L+F  S  G  L ATRLP
Sbjct:    1 MFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQGGELDFCVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGRLSFAYSDVGCSLWATRLP 105
[Close]
BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JA11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA11_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.570e-14
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 3 
Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRL 572
            M+++RP+P G+E I +GN   + V+C+G +++ FH     G+ D  +   DV  VP + FN +SLH  QR   IV D +G H+    L+F  S  G  L ATRL
Sbjct:    1 MFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQRGERDFCVQTSDVYVVPGITFNFFSLHHTQRRQRIVLDETGVHLFVGRLSFAYSDVGCSLWATRL 104
[Close]
BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5LNB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNB5_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.780e-9
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 3 
Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSD 491
            M++M+P+P G++ I +GN   + V+C+  I++ FH     G++D  + + DV  VP + FNL+SLH  QR   I  D
Sbjct:    1 MFDMKPIPAGKQFIQVGNGAHLRVQCVEGINMAFHMPGPSGETDFCVQMSDVYVVPGITFNLFSLHHTQRRQRITLD 77
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KCR3_9PHAE1.380e-2147.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKY9_9PHAE1.410e-1845.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3I1_9PHAE3.110e-1641.90Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5JW31_9PHAE6.260e-1637.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JX85_9PHAE2.660e-1540.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK7_9PHAE3.300e-1540.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JU31_9PHAE4.340e-1540.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JA11_9PHAE1.570e-1439.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LNB5_9PHAE3.780e-937.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101389contigP-canaliculata_contig101389:72..1013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size942
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101389.231.1prot_P-canaliculata_contig101389.231.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101389 347..739 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.5412867-UTR-P-canaliculata_contig101389:71..3461622815587.5412867-UTR-P-canaliculata_contig101389:71..346Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101389 72..346 +
1693494152.5190034-UTR-P-canaliculata_contig101389:71..3461693494152.5190034-UTR-P-canaliculata_contig101389:71..346Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101389 72..346 +
1622815587.5714376-UTR-P-canaliculata_contig101389:739..10131622815587.5714376-UTR-P-canaliculata_contig101389:739..1013Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101389 740..1013 +
1693494152.5379865-UTR-P-canaliculata_contig101389:739..10131693494152.5379865-UTR-P-canaliculata_contig101389:739..1013Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101389 740..1013 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.5558228-CDS-P-canaliculata_contig101389:346..7391622815587.5558228-CDS-P-canaliculata_contig101389:346..739Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101389 347..739 +
1693494152.528481-CDS-P-canaliculata_contig101389:346..7391693494152.528481-CDS-P-canaliculata_contig101389:346..739Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101389 347..739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101389.231.1

>prot_P-canaliculata_contig101389.231.1 ID=prot_P-canaliculata_contig101389.231.1|Name=mRNA_P-canaliculata_contig101389.231.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=131bp
MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFHGKSDQRITLIDVAYV
PDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP
ACTKGARRRQGEMRATNVLRELRHPISPPP*
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mRNA from alignment at P-canaliculata_contig101389:72..1013+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101389.231.1 ID=mRNA_P-canaliculata_contig101389.231.1|Name=mRNA_P-canaliculata_contig101389.231.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=942bp|location=Sequence derived from alignment at P-canaliculata_contig101389:72..1013+ (Pelvetia canaliculata dioecious)
CCTCCACTACCACAGTCAGCCCCCGCGCCGCCGGAACCGCATGGGCCGCC
CGTTCCGTACGAGTCATCCTCGAGCTCCTTCAGCGAACAGGCCACCCTGA
CGCAGTTTGTGCCACCAGGCGAGTCGAAAATATCGAGTGAAAGCGTGGTG
TGGGATGTTACTGTACCCGGTAGCTACCTACACAGCGCACTCGTAGTGCA
GTCGGGCAGGAATGAGAATGATGTTTGGATTGCCGACAGCGGCGCGTCGT
GCCACATGACGCCAATTGAACGAGAATGTATAACATGAGGCCCCTTCCGC
CCGGTCGCGAAACCATCACGATCGGGAACCGTCGGAGAATTAACGTAGAG
TGTATCGGGACTATAGATGTCATTTTCCACGGGAAGAGTGACCAGAGGAT
TACCTTGATTGATGTCGCATACGTTCCAGACCTAGGTTTTAACCTGTACT
CGCTGCACGCCGTCCAAAGAACACATCTGATAGTGTCGGACGCTTCTGGA
ACCCACATTATAGGAGCAAATCTGACGTTCCCGCGCAGTAGTAGCGGGTC
GTATTTGCGTGCCACCCGACTCCCTGCCTGTACTAAAGGAGCGAGACGGA
GGCAAGGAGAAATGCGCGCAACTAATGTTCTAAGAGAGTTGCGACACCCC
ATTTCACCTCCGCCGTAGAAAACCCATCTCCGCAGAGACATGTGCGCGAC
TGGTTTGCAAGATTTAAATGTTTCGCGAGCGGTTACAGTACTGGAACCGA
CCCCCTTTCCCCCTCTCAGTCATGTGTTGGGGGAAATTAAATTCATAAGG
AAAACCCCTTCTAGGCCCGAGTGTAGGATTGGGACCCCCCTGGCAGCGGC
TGCCCTGACCCCAGGGCCACTAAAGCATGGCAAGGAAGTAGATATTAATC
ACTTGCACGTTTCCCTTGCCCACGCCCATGCGAGTGTGCTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig101389:72..1013+

>mRNA_P-canaliculata_contig101389.231.1 ID=mRNA_P-canaliculata_contig101389.231.1|Name=mRNA_P-canaliculata_contig101389.231.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at P-canaliculata_contig101389:72..1013+ (Pelvetia canaliculata dioecious)
ATGTATAACATGAGGCCCCTTCCGCCCGGTCGCGAAACCATCACGATCGG
GAACCGTCGGAGAATTAACGTAGAGTGTATCGGGACTATAGATGTCATTT
TCCACGGGAAGAGTGACCAGAGGATTACCTTGATTGATGTCGCATACGTT
CCAGACCTAGGTTTTAACCTGTACTCGCTGCACGCCGTCCAAAGAACACA
TCTGATAGTGTCGGACGCTTCTGGAACCCACATTATAGGAGCAAATCTGA
CGTTCCCGCGCAGTAGTAGCGGGTCGTATTTGCGTGCCACCCGACTCCCT
GCCTGTACTAAAGGAGCGAGACGGAGGCAAGGAGAAATGCGCGCAACTAA
TGTTCTAAGAGAGTTGCGACACCCCATTTCACCTCCGCCGTAGATGTATA
ACATGAGGCCCCTTCCGCCCGGTCGCGAAACCATCACGATCGGGAACCGT
CGGAGAATTAACGTAGAGTGTATCGGGACTATAGATGTCATTTTCCACGG
GAAGAGTGACCAGAGGATTACCTTGATTGATGTCGCATACGTTCCAGACC
TAGGTTTTAACCTGTACTCGCTGCACGCCGTCCAAAGAACACATCTGATA
GTGTCGGACGCTTCTGGAACCCACATTATAGGAGCAAATCTGACGTTCCC
GCGCAGTAGTAGCGGGTCGTATTTGCGTGCCACCCGACTCCCTGCCTGTA
CTAAAGGAGCGAGACGGAGGCAAGGAGAAATGCGCGCAACTAATGTTCTA
AGAGAGTTGCGACACCCCATTTCACCTCCGCCGTAG
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