mRNA_P-canaliculata_contig10138.229.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10138.229.1
Unique NamemRNA_P-canaliculata_contig10138.229.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA)

HSP 1 Score: 323 bits (827), Expect = 5.400e-107
Identity = 150/227 (66.08%), Postives = 180/227 (79.30%), Query Frame = 3 
Query:  306 AEWTYRRAATDGGKPYGPSDWFQGYPDCGGSAQSPINLAASTHSVVDSTQFNLQFFPHTCAASELFFIANERVWEVVFEGCSEQASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKEGTADELLVVGVLFDVSKYGTNVELQPLWDVLDTGADSTSASFDARIYDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNEPTVISKMQLDEFRVSVALFDDSK 986
            AEWTYRR +T+G +PYGPSDW +GYPDCG  AQSPI+LAA   +VV  + + L+F+P+ C + EL F A+ERVWE++F GCS+   + F  E YNL+QIHIHSPSEH IGGS  +AEIHWVHVKEGT D+LLVVGVLFD + YG+NVE++ LWDVLD G  +T   F  RIYD++P N VFSHYMGSLTTPPCTE V WIVM++P  +SKMQLDEFR SVALFDDSK
Sbjct:   40 AEWTYRRTSTNGQQPYGPSDWHKGYPDCGKKAQSPIDLAADLETVVKGSAYELKFYPNECKSDELLFQADERVWEILFGGCSDVPHVEFKGERYNLLQIHIHSPSEHMIGGSEHSAEIHWVHVKEGTEDQLLVVGVLFDTTDYGSNVEIEHLWDVLDIGETTTKEVFTTRIYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMSKMQLDEFRTSVALFDDSK 266
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BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: A0A872YNN4_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A872YNN4_SACJA)

HSP 1 Score: 249 bits (636), Expect = 4.960e-78
Identity = 122/229 (53.28%), Postives = 162/229 (70.74%), Query Frame = 3 
Query:  309 EWTYRRAATDGGKPYGPSDWFQGYPDCGGSAQSPINLAASTHSVVDSTQFNLQFFPHTCAASELFFIANERVWEVVFEGCSEQASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKE---GTADELLVVGVLFDVSKYGTNVELQPLWDVLDTGADSTSASFDARIYDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNEPTVISKMQLDEFRVSVALFDDSK 986
            +WTYRRA+ +G +PY PSDW  GYPDCGG +QSPINL+A+  ++V++T+FNL+ F   CA+ EL F AN  VWE+ F  C+  ++L+F+   Y+L+Q+HIHSPSEH + GSL  AEIH VH ++   GT  ELLV+GV  D  ++G NV L+PLWDVL +GA           Y+LIP +  +SHYMGSLTTPPC+E V W+VM+ PTVI  +QLD FR SVA   +S+
Sbjct:   48 DWTYRRASHEGERPYSPSDWEIGYPDCGGDSQSPINLSANVGTLVEATEFNLELFGAECASKELDFEANGHVWEIDFSECTSTSNLSFDGGKYSLLQMHIHSPSEHMVAGSLHDAEIHLVHSRDDSDGTESELLVIGVFLDAKEHGWNVALEPLWDVLGSGAKPRGV---INPYELIPSDMAYSHYMGSLTTPPCSEIVRWVVMSTPTVIGDLQLDIFRDSVATATNSQ 273
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BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 7.020e-78
Identity = 116/227 (51.10%), Postives = 151/227 (66.52%), Query Frame = 3 
Query:  306 AEWTYRRAATDGGKPYGPSDWFQGYPDCGGSAQSPINLAASTHSVVDSTQFNLQFFPHTCAASELFFIANERVWEVVFEGCSEQASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKEGTADELLVVGVLFDVSKYGTNVELQPLWDVLDTGADSTSASFDARIYDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNEPTVISKMQLDEFRVSVALFDDSK 986
            AEWTYR     G +PYGP DW+ GYPDC G+ Q+PIN+AA         +  + FFP  C ++EL F ++  VW+V F GC++   L +  E YNL+Q HIHSPSEH +GG+  AAEIH VH+K+ T D LLVVG++F+VS YG NVEL+P+W+V+D   D     F A  Y L+P    F+ Y GSLTTPPCTE V WI+M+EP  +S  QLD +R +VAL + SK
Sbjct:   45 AEWTYRATGVVGEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSK 271
[Close]
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 3.290e-51
Identity = 81/119 (68.07%), Postives = 96/119 (80.67%), Query Frame = 3 
Query:  630 IGGSLRAAEIHWVHVKEGTADELLVVGVLFDVSKYGTNVELQPLWDVLDTGADSTSASFDARIYDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNEPTVISKMQLDEFRVSVALFDDSK 986
            IGGS   AEIHWVHVK GT D+LLV+GVLFD ++YG+NVE++ LWDVLD G  +T   F  R+YD++P N VFSHYMGSLTTPPCTE V WIVM++P  + KMQLDEFR SVALFD+SK
Sbjct:    2 IGGSEHEAEIHWVHVKAGTDDQLLVIGVLFDTTQYGSNVEIEHLWDVLDIGKPTTDEVFVTRVYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMGKMQLDEFRTSVALFDNSK 120
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BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: H6WB77_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB77_VAULI)

HSP 1 Score: 127 bits (319), Expect = 3.530e-31
Identity = 79/228 (34.65%), Postives = 109/228 (47.81%), Query Frame = 3 
Query:  366 WFQGYPDCGGSAQSPINLA---ASTHSVVDSTQFNLQFFPHTCAASELFFIANERVWEVVFEG-CSEQASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKEGTADELLVVGVLFDVSKYGT-NVELQPLWD-----------------------VLDTGADSTSASFDARIYDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNEPTVISKMQLDEFRVSV 965
            W   YPDC G  QSPIN+A    +T   +        F    C   +L + A+ + W V F+G C    ++T N   +NL+Q H+HS SEH IGG    AEIH+VH        L VVGV+   +     N+E    W+                       V  T + S SA      Y ++P +  + +Y+GSLTTPPC+E+VTWIVM E   +S  QL+ FR  +
Sbjct:    2 WGALYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMGACMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNVGNLEFAKYWEHMAYVSGKQQYASEIVEKSTATMVSATASSSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRAGL 229
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BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: H6WB76_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB76_VAULI)

HSP 1 Score: 122 bits (306), Expect = 1.510e-28
Identity = 80/236 (33.90%), Postives = 118/236 (50.00%), Query Frame = 3 
Query:  357 PSDWFQGYPDCGGSAQSPINLA---ASTHSVVDSTQFNLQFFPHTCAASELFFIANERVWEVVFEG-CSEQASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKEGTADELLVVGVLF----------DVSKYGTNV-----ELQPLWDVLDTGA------------DSTSASFDARI--YDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNEPTVISKMQLDEFRVSV 965
            P  W   YPDC G  QSPIN+A    +T   +        F    C   +L + A+ + W V F+G C    ++T N   +NL+Q H+HS SEH IGG    AEIH+VH        L VVGV+           + +KY  ++     + +   ++++T A             STS S   ++  Y ++P +  + +Y+GSLTTPPC+E+VTWIVM E   +S  QL+ FR  +
Sbjct:   75 PDMWGYLYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMGMCMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNIGNLEFTKYAEHMAYVSGKQKYASEIMETDATMAPAATPSSMASSTSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRAGL 310
[Close]
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: A0A7S3XPW5_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPW5_HETAK)

HSP 1 Score: 119 bits (299), Expect = 3.140e-28
Identity = 77/217 (35.48%), Postives = 108/217 (49.77%), Query Frame = 3 
Query:  312 WTYRRAAT--------DGGKPYG--PSDWFQGYPDCGGSAQSPINLAASTHSVVDSTQFNLQFFPHTCAASELFFIANERVWEVVFEGCSEQASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKEGTADELLVVGVLFDVSKYGTNVELQPLWDV----LDTGADSTSASFDARIY-DLIPPNKVFSHYMGSLTTPPCTESVTWIVMNE 917
            W Y +A +        DG   Y   P +W +   DC G  QSPIN+  +  S    +   LQ   +      L+ + N   W+V    C    + T+N   Y LVQ H HSPSE+ IGG    AE+H VH    +   LLV+GV+FDV  YG N   +  W+     + TG    S S     Y +++P +  + H+ GSLTTPPC+E VTWI+M++
Sbjct:   54 WVYNQADSIAAGTDCGDGDTQYACSPENWGEVNRDCEGENQSPINVVMAQKS---KSLSQLQLNKNNEDCDLLYLVDNYHTWKVDMSECDGSYTTTWNGVDYELVQFHFHSPSENTIGGGYFDAEMHLVHADADS--NLLVIGVMFDVVDYGGNNFFKEFWNNTWSDVSTGDSEVSLSSTLDPYTEILPADLSYYHWNGSLTTPPCSEGVTWILMSQ 265
[Close]
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: A0A7S3XQ34_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ34_HETAK)

HSP 1 Score: 119 bits (297), Expect = 8.740e-28
Identity = 71/195 (36.41%), Postives = 104/195 (53.33%), Query Frame = 3 
Query:  357 PSDWFQGYPDCGGSAQSPINLAASTHSVVDSTQFNLQFFPHTCAASELFFIANERVWEVVFEGCSEQASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVK-EGTADELLVVGVLFDVSKYGTNVELQPLWDVLDTGADSTS----ASFDARI---YDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNE 917
            P +W     DC G++QSPIN+  ++ S   S    LQ      + + ++ I N   W+V    C +    T+    Y L+Q H HSPSE+ IGG    AE+H VH   EG   ELLV+GV+FDV  YG N      W+  +T +D        S ++ +    +++P    + H+ GSLTTPPC+E VTWI+M++
Sbjct:   95 PENWDSVNDDCAGTSQSPINVVQASPS---SDLSGLQLTKAKSSCNAVYLIDNYHTWKVDMTSCDDAYYATWKGTDYYLIQFHFHSPSENTIGGGYFDAEMHLVHASAEG---ELLVIGVMFDVVDYGGNHFFSQFWN--NTWSDDPDWYRVVSLESNLDPYTEILPATPSYYHWNGSLTTPPCSEGVTWILMSQ 281
[Close]
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: UPI001F21F73F (carbonic anhydrase family protein n=2 Tax=Acaryochloris TaxID=155977 RepID=UPI001F21F73F)

HSP 1 Score: 114 bits (286), Expect = 1.780e-26
Identity = 77/227 (33.92%), Postives = 112/227 (49.34%), Query Frame = 3 
Query:  288 TPGTGDAEWTYRRAATDGGKPYGPSDWFQ---GYPDCG-GSAQSPINLAASTHSVVDSTQFNLQFFPHTCAASELFFIANERVWEVVFEGCSEQASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKEGTADELLVVGVLFDVSKYGTNVELQPLWDVLDTGADSTSASFDARIYDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNEPTVISKMQLDEFR 956
            TP      W+Y  A+        P  W +    Y  C  G AQSPINL +     ++S    L    H+    E   + N R   V +E  +   +LT N + Y LVQ H H+PSEH I     A E+H VH  +  A+EL VVGV+  +     N  L  +WD +    +  + + D  +  L+P ++ F HY GSLTTPPC+ESV W ++ +P   S+ Q++ F+
Sbjct:   21 TPAIATPIWSYEGASD-------PGHWSELQSDYSLCSTGQAQSPINLRSQD---LNSDHETLNVDYHSSPLDE---VNNGRTVTVNYEAGN---TLTLNSQTYELVQFHFHAPSEHLIDNKTSAMEMHLVH--KNAANELAVVGVM--IKPGAANPLLDEIWDNMPGVEEENAPNLDIDVRSLLPRDRSFYHYQGSLTTPPCSESVNWAILQQPIQASRQQINTFK 227
[Close]
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: A0A836C9F5_9STRA (Alpha carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F5_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.870e-26
Identity = 74/241 (30.71%), Postives = 121/241 (50.21%), Query Frame = 3 
Query:  309 EWTYRRAATDGGK--PYGPSDWFQG--YPDCGGSAQSPINLAASTHSVVDSTQ-------FNLQFFPHTCAASELFFIANERVWEVVFEGCSE------QASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKEGTADELLVVGVLFDVSKYGTNVELQPLWDVLDT------GADSTSASFDARIYDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNEPTVISKMQLDEFRVS 962
            +WTY       G      P+DW +   Y  C G  QSPI++  ST + +  +        F+ Q    +C  S+L   + +   E+ +E C +      Q S      +Y L Q+H+H+ SEH++ G   AAE+H VH+ E  + ++LV+ VL DV++     E+   W +++       G  +   +  +  Y L+P +K +  Y GSLT PPCTE+VT++++ E T ++  QL  FR S
Sbjct:   83 DWTYNPVCYGDGSYTVLAPADWHKNEDYAACAGPRQSPIDIVTSTLNDLGCSSDNEYLPAFSWQLQSGSCPFSQLV-PSTKHALELSYEECDDSTRPGLQYSGALGHSSYKLKQVHLHAGSEHSVDGQFGAAELHLVHINEADSTDILVLAVLLDVAETSEEPEVYKYWTLMNEAVANYQGESAIDMNAISDPYALLPESKQYYTYQGSLTIPPCTETVTFVILAERTQVADAQLQAFRQS 322
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F6MHT6_SACJA5.400e-10766.08Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
A0A872YNN4_SACJA4.960e-7853.28Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
D8LB10_ECTSI7.020e-7851.10Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
Q9SMD6_9PHAE3.290e-5168.07Carbonic anhydrase alpha type (Fragment) n=1 Tax=L... [more]
H6WB77_VAULI3.530e-3134.65Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
H6WB76_VAULI1.510e-2833.90Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
A0A7S3XPW5_HETAK3.140e-2835.48Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma ... [more]
A0A7S3XQ34_HETAK8.740e-2836.41Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma ... [more]
UPI001F21F73F1.780e-2633.92carbonic anhydrase family protein n=2 Tax=Acaryoch... [more]
A0A836C9F5_9STRA1.870e-2630.71Alpha carbonic anhydrase n=1 Tax=Tribonema minus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10138contigP-canaliculata_contig10138:3752..8029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score251.5
Seed ortholog evalue4.4e-64
Seed eggNOG ortholog2880.D8LB10
KEGG rclassRC02807
KEGG koko:K01672,ko:K01674,ko:K04413
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGsCOG3338@1,KOG0382@2759
EC2.7.11.1,4.2.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categorysignal peptide
Exons9
Model size986
Cds size822
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10138.229.1prot_P-canaliculata_contig10138.229.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10138 3752..7865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.357172-CDS-P-canaliculata_contig10138:3751..38471622815587.357172-CDS-P-canaliculata_contig10138:3751..3847Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 3752..3847 -
1693494152.4117215-CDS-P-canaliculata_contig10138:3751..38471693494152.4117215-CDS-P-canaliculata_contig10138:3751..3847Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 3752..3847 -
1622815587.3719306-CDS-P-canaliculata_contig10138:4123..42641622815587.3719306-CDS-P-canaliculata_contig10138:4123..4264Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 4124..4264 -
1693494152.4227538-CDS-P-canaliculata_contig10138:4123..42641693494152.4227538-CDS-P-canaliculata_contig10138:4123..4264Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 4124..4264 -
1622815587.3825395-CDS-P-canaliculata_contig10138:4556..46761622815587.3825395-CDS-P-canaliculata_contig10138:4556..4676Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 4557..4676 -
1693494152.4310975-CDS-P-canaliculata_contig10138:4556..46761693494152.4310975-CDS-P-canaliculata_contig10138:4556..4676Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 4557..4676 -
1622815587.3928986-CDS-P-canaliculata_contig10138:4893..49921622815587.3928986-CDS-P-canaliculata_contig10138:4893..4992Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 4894..4992 -
1693494152.44005-CDS-P-canaliculata_contig10138:4893..49921693494152.44005-CDS-P-canaliculata_contig10138:4893..4992Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 4894..4992 -
1622815587.4045122-CDS-P-canaliculata_contig10138:5445..55291622815587.4045122-CDS-P-canaliculata_contig10138:5445..5529Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 5446..5529 -
1693494152.455079-CDS-P-canaliculata_contig10138:5445..55291693494152.455079-CDS-P-canaliculata_contig10138:5445..5529Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 5446..5529 -
1622815587.4186165-CDS-P-canaliculata_contig10138:5756..58411622815587.4186165-CDS-P-canaliculata_contig10138:5756..5841Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 5757..5841 -
1693494152.4651244-CDS-P-canaliculata_contig10138:5756..58411693494152.4651244-CDS-P-canaliculata_contig10138:5756..5841Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 5757..5841 -
1622815587.4314864-CDS-P-canaliculata_contig10138:6140..62431622815587.4314864-CDS-P-canaliculata_contig10138:6140..6243Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 6141..6243 -
1693494152.4726813-CDS-P-canaliculata_contig10138:6140..62431693494152.4726813-CDS-P-canaliculata_contig10138:6140..6243Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 6141..6243 -
1622815587.4452777-CDS-P-canaliculata_contig10138:6378..63971622815587.4452777-CDS-P-canaliculata_contig10138:6378..6397Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 6379..6397 -
1693494152.4804664-CDS-P-canaliculata_contig10138:6378..63971693494152.4804664-CDS-P-canaliculata_contig10138:6378..6397Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 6379..6397 -
1622815587.4606175-CDS-P-canaliculata_contig10138:7790..78651622815587.4606175-CDS-P-canaliculata_contig10138:7790..7865Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 7791..7865 -
1693494152.4883738-CDS-P-canaliculata_contig10138:7790..78651693494152.4883738-CDS-P-canaliculata_contig10138:7790..7865Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10138 7791..7865 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.4742618-UTR-P-canaliculata_contig10138:7865..80291622815587.4742618-UTR-P-canaliculata_contig10138:7865..8029Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10138 7866..8029 -
1693494152.4969854-UTR-P-canaliculata_contig10138:7865..80291693494152.4969854-UTR-P-canaliculata_contig10138:7865..8029Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10138 7866..8029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10138.229.1

>prot_P-canaliculata_contig10138.229.1 ID=prot_P-canaliculata_contig10138.229.1|Name=mRNA_P-canaliculata_contig10138.229.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=274bp
MSRFVLLGFFLLAYNFVVHVSALLPLFGDDESDTTNTTTGTTPGTGDAEW
TYRRAATDGGKPYGPSDWFQGYPDCGGSAQSPINLAASTHSVVDSTQFNL
QFFPHTCAASELFFIANERVWEVVFEGCSEQASLTFNDEAYNLVQIHIHS
PSEHAIGGSLRAAEIHWVHVKEGTADELLVVGVLFDVSKYGTNVELQPLW
DVLDTGADSTSASFDARIYDLIPPNKVFSHYMGSLTTPPCTESVTWIVMN
EPTVISKMQLDEFRVSVALFDDSK
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mRNA from alignment at P-canaliculata_contig10138:3752..8029-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10138.229.1 ID=mRNA_P-canaliculata_contig10138.229.1|Name=mRNA_P-canaliculata_contig10138.229.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4278bp|location=Sequence derived from alignment at P-canaliculata_contig10138:3752..8029- (Pelvetia canaliculata dioecious)
CTCCCCCGAAGACGGGATGAAAATATCAACTGCAACTACCAGCTCAACAC
CGCTACGGGTACCTTTCCGCGCAGCTTCAGCTACAAACAGAGTGCAGCAG
CTGTAATTACACCACACCAGCAGCTACTACCGTCGGGGGCTACTGCTTGC
TAGGCTTACTGATCATGTCGCGATTCGTGCTGCTGGGGTTTTTCCTCCTG
GCATACAACTTCGTCGTTCACGTTTCCGCACTGCTACCGGTAAGTAACCA
AGTGCGGGTCTGATAAGCAGTCCCGAGAATGGTTTCGTTTTCAATCTCAT
TTGATGCCATTTTCGTTTCCCCGTGCATTGTATTTACTGCTCGTGTTATT
TTATTCATTCTCTATTTGCTTCATCATGCTTTATTGATAGCTCAATTCCA
AACACGCGAGTCGATTTGATTGATTTCTGAAGTATGATGATCCATGTTTC
GATATCCTCGAGTACAAGAAGAATCGTGCTTACAGAGGAAATCGTCCATG
TTTCGATATCCTAGAGTACAAGGAGAATCGTGCTTGCAGAGGAAAATTCG
TCCTGCCCTCTCGCCATGTATCCTTCATTTTGTATCGAAGAATAATATGT
ATGTCGAGTAGTAAATGCTCCCGCTTCCTTCTGTCAGTCCGCTCTGACCG
TCGACAACCACACAAAAACTCAAATAATATAGTCTACACAGTTTGCCTGT
TTTTGTTTCATAGCCATCAACCTGTAGCATTTGAACACGTTCCCTCTGTG
ACCTCTGATTTGCGCTTTAGGTGTAACGTTCCGACGTGATTGCCAAGGTA
ATCGTATGTATATTCAGTTAATGGTGATACTGTACGTAGTTCTAGCGCTC
GTATACAAAGCGTCTGCGTTGGTCGTCAGCTGTAGTAGCGGGTGTCATGG
GACACGTTTCTAACAAAGTACGTGCTTGTAACATAAACAGCGGCACGTGT
TTTATCGCTCGAAGAATGGCGTGTGAAAACCTGATAGGACTAAACAGGAA
TTTTACACCGTGCCAAGATACTTGAACTTTTCGTAGAAGGCGGCTCTTAC
CGTGGTAGGATGTTCTCTGGCCTACTATGCATACAAAGTCCCATCGTGGC
CATGGGGTTGTAGTAATCAGAAAGAATCGTTTTTTACATGTTGTAAGAAT
TGGGTATACTAGCAGAAGATTCTCCTTATGACATCCCCGCTTTGCTTGGA
GAGGAAATATCACAGACCTCAGGAGGAGATTGCAAGACACCTCAACTAAG
GTGCTTCCCAACCTAGTAGTTTTATCACCCCCTTCATTATAGAGTCTGTC
AGATGTGAGTGTTTCAACCTTTTTTTTCCCAGCACAGCATGTTGCGTCCC
GCTCCCATATGAAGAATCTAGACGTTATCAAGACTGTCTGTGCACGTCGC
TTGCTCAAAGCAATCATTCATAGACTGGCGTTGTGGACCTTAGTCCGTCT
TAGGTCGCCGCTAATGTTTATTCGCGACCCCCCGCCTTCTTCTCCCTCCC
GTGTGATGTACTTGCGGTCCCGTGTATTTTCTAAACTTTCTCGGTGCACG
GCGATGGTGGTGGTGGCTGCGACTCTCCTGGCGGTCTGTTGCTGGATCCT
TGTCACCATGGTCGGGAAATTCTACTCCGCAGCTATTCGGTGACGACGAA
TGTGAGTGTTTGACAGGGTATTGGGTTGGACGGGTAGGTGTATCCTATAC
CCAGATGCGAATAACGATCTGTCGATCAAAACTGAATGTGTCATCTTATG
CTCCGTCCACGTACCCCCATCTGTTTTTTAACGAAGCCGACACTACTAAC
ACAACCACGGGAACTACGCCTGGAACCGGAGATGCTGAGTGGACCTACCG
CCGAGCAGCCACAGACGGGGGCAAGCCTTACGGACCCAGGTACGGCCTTC
TTTGCAGTATATAGTCAACCCACCAGAGCAGTACCATAGAAGGAACCGTA
CGTTTTTATACTAAAACTAACATAGACTACGGCGTCATGATGCCAGATGT
GTGTACATCAAACTGTTCTAACCGAGTAGGGGGTTGCTCTTCCGCGGATA
AGGACATACGGTGGACGCTGTATTCGTGTGTTCGTCCCACGTGCGAATCT
ATACTTTAAGGCATCAAGAGACTACCGTATTATGTAGTATAGGTGTGCAC
TTGACCTGACATATCAACCGCATGTACGCTGTCCGCAGCGACTGGTTCCA
GGGCTACCCGGACTGTGGTGGCAGTGCTCAGAGCCCCATCAACCTCGCGG
CTAGCACGCACTCGGTAGTAGATGTGAGAAAGACCATGTCAAGCTTCAAC
TTACCGTGAAAAACTGCACACCGACCGAGTGCACTTTCGCCAGGCGTAGA
CGATGGTCTCGTCGCGCAGGCCGAGTGCACTTTCGCCAGGCGTAGACGAT
GGTCTCGTCGCGCAGGCAGAGACAAAGCTGACCTCCCTCCTTTACCTTCC
CTGCGGCTTGTCCCCGATACTGGTGCGTACAAACATACATCCAAATGCAG
TCGACCCAGTTCAACCTCCAGTTCTTCCCTCACACGTGTGCGGCGAGCGA
GCTGTTCTTCATCGCCAACGAGCGCGTGTGGGAGGTGAGGGACAGATTTT
AAACTCCTACAGTGTAGAGTCATTACAGCCGCGTGGCTTTGATGGAGTGT
AGTTAGAAAACAACCCAGGTACATACTAATATGCTGTTTTTCAGGTGGCG
AGGCATCATCCGCATGGCATTAACCTGCCTAGAGCTTTACTTCAAGGTTG
TCCCTTCGAAACAGAGTCTACAGACTCCCCCTGTCTGCGTCCAGCGGAAC
ATGCGACCTCTTAAGTGCTTGAACTGCTTTACCGGAAGCGTGAATTCTAC
GGCATCTCCATACCGGAAAGCTCCAGAAGAAAAAAAACACGGATGGATCG
TTACGCGATTTGGAGTACAAAAACGCTACGATTGAGCAATGAACTTTTAA
GTGTGTTGTGTAGCGCGTGACACTACGAGCAAAGCACTAACAATGCCTTC
TCTTCTCTTCTGACGAAACATGCTGATTCCGACGCAGGTCGTTTTCGAGG
GATGTTCGGAGCAGGCCTCTCTAACCTTCAACGACGAAGCTTACAATCTG
GTTCAGATCCATATTCATTCCCCCTCTGAGCACGCGGTAAGAAAACATAT
TGACATTGGGGCAAGTGTTTTGCGCAGAGAAATACGCGCCGCGGGTAGCT
CTGACGAAGTGCACCCGTAGAGCCATGTCTCCCAAGCACATATCTTGTCG
CGCGCTCGAAGTCATAAGCCCGAATTTCCATATGCCCATAACGCATCATC
TCATGACGATGGCCCCATATTGTTGTTTTCTCCGTGGTTCTCCTCCATGG
TAGATTGGAGGGTCCCTCCGCGCGGCCGAGATACACTGGGTGCACGTCAA
GGAAGGAACGGCGGACGAACTGCTTGTAGTTGGCGTACTCTTCGACGTCA
GCAAATACGGTACCAACGTTGAGGTCCGTCCGCATGGCAGAGAAACTTGA
CTTGTGTCACCGTCTTTCCCCCCGTGCTAAACACAGTTTGAGCTGTCGAA
TGAGGTCGCCCGAATGTCTATCGTTTTGGCCGGGACAAGGTCTGCACGTA
AAAAGGATTCGTTTTGACGATCGCTCTCATCCATCGTTTTGATATCTTAG
AAGAAGCCTTTGTTGTGTTGTGTTTAATACACACTATTATTTACCTCAAA
GTCCCGGTTTTCGTCTTCCGGATCCTCTATCTCCATGTCCTGCCAATGCG
CACGCGATACTGCAGCTTCAGCCTCTTTGGGACGTTCTGGACACCGGTGC
AGACTCCACAAGCGCATCGTTCGACGCACGGATTTACGACCTGATTCCAC
CCAACAAAGTGTTTTCGCACTACATGGGATCTCTAACAACGCCCCCCTGT
ACGGAAGTGAGAGCAGTAGCTTTAGTGGCGCGAAAACACGAAATGACGAT
CGGGCAGTGCTTCGCTACCTATGTCCGTCTTGGGGGCCCTTTTTGTTGTA
CAGTACTGAACATTTCGTTTTTTGCGTCGCAGAAGCTTCCACGCGCTTGA
CGTCCCTGGGGGCTGTGTGTAGCATGCACCCATTAATGTCTGTTTTTTTC
CACGAACGCATACATGCGATTCAGCCAGAAAAAATCTAGTTCTAACCTGT
GCCTCGTGACCGATCGCTATTGAACGCCACAGAGCGTTACGTGGATTGTC
ATGAACGAGCCTACAGTAATTAGCAAGATGCAGCTGGACGAGTTTCGCGT
ATCGGTCGCGCTGTTCGACGACTCCAAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10138:3752..8029-

>mRNA_P-canaliculata_contig10138.229.1 ID=mRNA_P-canaliculata_contig10138.229.1|Name=mRNA_P-canaliculata_contig10138.229.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1644bp|location=Sequence derived from alignment at P-canaliculata_contig10138:3752..8029- (Pelvetia canaliculata dioecious)
ATGTCGCGATTCGTGCTGCTGGGGTTTTTCCTCCTGGCATACAACTTCGT
CGTTCACGTTTCCGCACTGCTACCGATGTCGCGATTCGTGCTGCTGGGGT
TTTTCCTCCTGGCATACAACTTCGTCGTTCACGTTTCCGCACTGCTACCG
CTATTCGGTGACGACGAATCTATTCGGTGACGACGAATCCGACACTACTA
ACACAACCACGGGAACTACGCCTGGAACCGGAGATGCTGAGTGGACCTAC
CGCCGAGCAGCCACAGACGGGGGCAAGCCTTACGGACCCAGCCGACACTA
CTAACACAACCACGGGAACTACGCCTGGAACCGGAGATGCTGAGTGGACC
TACCGCCGAGCAGCCACAGACGGGGGCAAGCCTTACGGACCCAGCGACTG
GTTCCAGGGCTACCCGGACTGTGGTGGCAGTGCTCAGAGCCCCATCAACC
TCGCGGCTAGCACGCACTCGGTAGTAGATCGACTGGTTCCAGGGCTACCC
GGACTGTGGTGGCAGTGCTCAGAGCCCCATCAACCTCGCGGCTAGCACGC
ACTCGGTAGTAGATTCGACCCAGTTCAACCTCCAGTTCTTCCCTCACACG
TGTGCGGCGAGCGAGCTGTTCTTCATCGCCAACGAGCGCGTGTGGGAGTC
GACCCAGTTCAACCTCCAGTTCTTCCCTCACACGTGTGCGGCGAGCGAGC
TGTTCTTCATCGCCAACGAGCGCGTGTGGGAGGTCGTTTTCGAGGGATGT
TCGGAGCAGGCCTCTCTAACCTTCAACGACGAAGCTTACAATCTGGTTCA
GATCCATATTCATTCCCCCTCTGAGCACGCGGTCGTTTTCGAGGGATGTT
CGGAGCAGGCCTCTCTAACCTTCAACGACGAAGCTTACAATCTGGTTCAG
ATCCATATTCATTCCCCCTCTGAGCACGCGATTGGAGGGTCCCTCCGCGC
GGCCGAGATACACTGGGTGCACGTCAAGGAAGGAACGGCGGACGAACTGC
TTGTAGTTGGCGTACTCTTCGACGTCAGCAAATACGGTACCAACGTTGAG
ATTGGAGGGTCCCTCCGCGCGGCCGAGATACACTGGGTGCACGTCAAGGA
AGGAACGGCGGACGAACTGCTTGTAGTTGGCGTACTCTTCGACGTCAGCA
AATACGGTACCAACGTTGAGCTTCAGCCTCTTTGGGACGTTCTGGACACC
GGTGCAGACTCCACAAGCGCATCGTTCGACGCACGGATTTACGACCTGAT
TCCACCCAACAAAGTGTTTTCGCACTACATGGGATCTCTAACAACGCCCC
CCTGTACGGAACTTCAGCCTCTTTGGGACGTTCTGGACACCGGTGCAGAC
TCCACAAGCGCATCGTTCGACGCACGGATTTACGACCTGATTCCACCCAA
CAAAGTGTTTTCGCACTACATGGGATCTCTAACAACGCCCCCCTGTACGG
AAAGCGTTACGTGGATTGTCATGAACGAGCCTACAGTAATTAGCAAGATG
CAGCTGGACGAGTTTCGCGTATCGGTCGCGCTGTTCGACGACTCCAAGAG
CGTTACGTGGATTGTCATGAACGAGCCTACAGTAATTAGCAAGATGCAGC
TGGACGAGTTTCGCGTATCGGTCGCGCTGTTCGACGACTCCAAG
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