mRNA_P-canaliculata_contig101361.226.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101361.226.1
Unique NamemRNA_P-canaliculata_contig101361.226.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig101361.226.1 vs. uniprot
Match: A0A518EZB5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EZB5_9BACT)

HSP 1 Score: 218 bits (556), Expect = 3.430e-69
Identity = 101/182 (55.49%), Postives = 137/182 (75.27%), Query Frame = 1 
Query:    1 MEASAPRRPAVPAYSVTALMQAPEQKLGETLSLAVQFHSEVEEWNPFLSRFDPAEFRCVKVWADEQWLWIKEEYESPATRLFVRRGTIAEAMMDGAKAHDRLRVYAVVREMHAGEAWIEVTDAERTEEQTPEGTVLHAISAMKLIDRDGWALAVSELDRALRPTLPGHVRRELEQIRDQCQA 546
            +EA+AP  P +P YS++AL+  PE+KLGE   +  Q H E+++W+PFL+RF   ++RC+  WADEQWLWIKEE+++PA   FVRRG+  +  +   + HDRL++   VRE+HAG  WIE+T A  TE QTPEGT+LHAI A+ +I+R+GWALA SEL+RAL+P LPGHVRREL  I +QC+A
Sbjct:   28 VEAAAPVPPVIPTYSISALLYQPERKLGEEHRVFAQLHGEIDDWHPFLTRFHSGDYRCLTFWADEQWLWIKEEFDAPAVDFFVRRGSEVDRRLRQCRKHDRLQLDLEVREVHAGRTWIEITGATLTEAQTPEGTILHAIRALDMIEREGWALAASELERALKPDLPGHVRRELRTILEQCRA 209
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BLAST of mRNA_P-canaliculata_contig101361.226.1 vs. uniprot
Match: A0A7C7YUK0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C7YUK0_9BACT)

HSP 1 Score: 114 bits (285), Expect = 2.940e-28
Identity = 55/150 (36.67%), Postives = 85/150 (56.67%), Query Frame = 1 
Query:   79 LGETLSLAVQFHSEVEEWNPFLSRFDPAEFRCVKVWADEQWLWIKEEYESPATRLFVRRGTIAEAMMDGAKAHDRLRVYAVVREMHAGEAWIEVTDAERTEEQTPEGTVLHAISAMKLIDRDGWALAVSELDRALRPTLPGHVRRELEQI 528
            LG  + + VQ HS  E WNPFL+RF P EF C++ W+D Q+ W++ ++E P  R+F RRG+ AE  +  AK + R  +   VR +  G+ W+EV+  +        G VLHA   ++ +++  W  A  E +RA    LP   R EL+++
Sbjct:   61 LGNRVQITVQMHSYQESWNPFLTRFGPREFVCLRGWSDAQFPWLRGDFEQPLMRVFARRGSAAEWALADAKRYQRFELTCAVRAVFGGQPWLEVSAVKPLARNLGTGCVLHAARGLEFMEKGLWQAARLEFERATAGALPRVAREELQRL 210
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BLAST of mRNA_P-canaliculata_contig101361.226.1 vs. uniprot
Match: A0A7Y4WIV0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y4WIV0_9BACT)

HSP 1 Score: 111 bits (278), Expect = 3.750e-27
Identity = 64/164 (39.02%), Postives = 96/164 (58.54%), Query Frame = 1 
Query:   43 SVTALMQAPEQKLGETLSLAVQFHSEVEEWNPFLSRFDPAEFRCVKVWADEQWLWIKEEYESPATRLFVRRGTIAEAMMDGAKAHDRLRVYAVVREMHAGEAWIEVTDAERTEEQTPEGTVLHAISAMKLIDRDGWALAVSELDRALRPTLPGH-VRRELEQIR 531
            +++AL   P + LG  +   +QF + VE+WNP+LSRF+PA +  ++VW DE   W +  +E+PA RLFVRRG   E ++  A+ + R  V A VRE   GEAW+E+ +    E +  EGT+LH   A +L     + LA+ + +RA    L  H +   LE+IR
Sbjct:   39 TLSALRAQPGRYLGLEVRFVLQFRALVEDWNPYLSRFEPARWLALEVWPDEALNWERAAFETPARRLFVRRGGGFEPLVRRARIYQRFEVRARVREAFLGEAWLELLELVPLEGEVGEGTILHVTRARELAAEGQFDLALDQYERARSAPLSPHALAAVLEEIR 202
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BLAST of mRNA_P-canaliculata_contig101361.226.1 vs. uniprot
Match: A0A518CW80_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518CW80_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 2.010e-21
Identity = 54/146 (36.99%), Postives = 79/146 (54.11%), Query Frame = 1 
Query:  130 WNPFLSRFDPAEFRCVKVWADEQWLWIKEEYESPATRLFVRRGTIAEAMMDGAKAHDRLRVYAVVREMHAGEAWIEVTDAERTEEQTPEGTVLHAISAMKLIDRDGWALAVSELDRALRPTLPGHVRRELEQIRDQCQATIDAQNA 567
            W+P L+RFD A +  ++ W+D+  LW +  +E+PA  LF RRGT A   +  A  +DR+ V   VR++ AGE WIE+    R      E TV HA  A +L       LA SE++RAL   +P H R  L  I ++ +   D  ++
Sbjct:   66 WDPLLTRFDGATWLRLEAWSDDAALWERASFENPAPYLFARRGTGAAQALLAASPYDRIEVEGAVRQVFAGEPWIEIWAVHRKGVALTEATVFHAARAERLEREGNLELARSEIERALAAPMPEHHRAPLLAIAERLEVPADGSDS 211
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101361.226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A518EZB5_9BACT3.430e-6955.49Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7C7YUK0_9BACT2.940e-2836.67Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7Y4WIV0_9BACT3.750e-2739.02Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518CW80_9BACT2.010e-2136.99Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101361contigP-canaliculata_contig101361:210..782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size573
Cds size573
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.232962-CDS-P-canaliculata_contig101361:209..7821622815587.232962-CDS-P-canaliculata_contig101361:209..782Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101361 210..782 -
1693494152.3814657-CDS-P-canaliculata_contig101361:209..7821693494152.3814657-CDS-P-canaliculata_contig101361:209..782Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101361 210..782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101361.226.1prot_P-canaliculata_contig101361.226.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101361 210..782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101361.226.1

>prot_P-canaliculata_contig101361.226.1 ID=prot_P-canaliculata_contig101361.226.1|Name=mRNA_P-canaliculata_contig101361.226.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=191bp
MEASAPRRPAVPAYSVTALMQAPEQKLGETLSLAVQFHSEVEEWNPFLSR
FDPAEFRCVKVWADEQWLWIKEEYESPATRLFVRRGTIAEAMMDGAKAHD
RLRVYAVVREMHAGEAWIEVTDAERTEEQTPEGTVLHAISAMKLIDRDGW
ALAVSELDRALRPTLPGHVRRELEQIRDQCQATIDAQNARR
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mRNA from alignment at P-canaliculata_contig101361:210..782-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101361.226.1 ID=mRNA_P-canaliculata_contig101361.226.1|Name=mRNA_P-canaliculata_contig101361.226.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at P-canaliculata_contig101361:210..782- (Pelvetia canaliculata dioecious)
ATGGAGGCTTCGGCGCCGCGTCGACCCGCCGTCCCGGCTTACTCGGTGAC
CGCGCTGATGCAGGCCCCAGAGCAGAAGCTCGGGGAGACCCTTTCGCTCG
CGGTGCAGTTCCACTCCGAGGTCGAAGAATGGAACCCGTTCCTCTCCCGC
TTTGACCCCGCCGAGTTCCGCTGCGTCAAGGTGTGGGCGGACGAGCAGTG
GCTTTGGATCAAGGAGGAGTACGAGTCGCCGGCCACGCGTCTCTTCGTGC
GCCGCGGGACCATAGCAGAGGCCATGATGGACGGCGCGAAGGCCCATGAC
CGACTCCGTGTCTACGCTGTCGTGCGGGAGATGCACGCAGGGGAGGCATG
GATCGAAGTGACCGACGCGGAGAGAACAGAGGAGCAAACCCCCGAAGGCA
CTGTCCTGCACGCGATCAGCGCCATGAAGCTCATCGACCGCGATGGCTGG
GCCTTAGCCGTGAGTGAACTCGATCGTGCCCTGCGACCGACGCTGCCCGG
CCACGTGCGGCGCGAGCTCGAACAGATCCGTGATCAGTGCCAGGCGACCA
TAGACGCGCAGAACGCGCGCCGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig101361:210..782-

>mRNA_P-canaliculata_contig101361.226.1 ID=mRNA_P-canaliculata_contig101361.226.1|Name=mRNA_P-canaliculata_contig101361.226.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at P-canaliculata_contig101361:210..782- (Pelvetia canaliculata dioecious)
ATGGAGGCTTCGGCGCCGCGTCGACCCGCCGTCCCGGCTTACTCGGTGAC
CGCGCTGATGCAGGCCCCAGAGCAGAAGCTCGGGGAGACCCTTTCGCTCG
CGGTGCAGTTCCACTCCGAGGTCGAAGAATGGAACCCGTTCCTCTCCCGC
TTTGACCCCGCCGAGTTCCGCTGCGTCAAGGTGTGGGCGGACGAGCAGTG
GCTTTGGATCAAGGAGGAGTACGAGTCGCCGGCCACGCGTCTCTTCGTGC
GCCGCGGGACCATAGCAGAGGCCATGATGGACGGCGCGAAGGCCCATGAC
CGACTCCGTGTCTACGCTGTCGTGCGGGAGATGCACGCAGGGGAGGCATG
GATCGAAGTGACCGACGCGGAGAGAACAGAGGAGCAAACCCCCGAAGGCA
CTGTCCTGCACGCGATCAGCGCCATGAAGCTCATCGACCGCGATGGCTGG
GCCTTAGCCGTGAGTGAACTCGATCGTGCCCTGCGACCGACGCTGCCCGG
CCACGTGCGGCGCGAGCTCGAACAGATCCGTGATCAGTGCCAGGCGACCA
TAGACGCGCAGAACGCGCGCCGGATGGAGGCTTCGGCGCCGCGTCGACCC
GCCGTCCCGGCTTACTCGGTGACCGCGCTGATGCAGGCCCCAGAGCAGAA
GCTCGGGGAGACCCTTTCGCTCGCGGTGCAGTTCCACTCCGAGGTCGAAG
AATGGAACCCGTTCCTCTCCCGCTTTGACCCCGCCGAGTTCCGCTGCGTC
AAGGTGTGGGCGGACGAGCAGTGGCTTTGGATCAAGGAGGAGTACGAGTC
GCCGGCCACGCGTCTCTTCGTGCGCCGCGGGACCATAGCAGAGGCCATGA
TGGACGGCGCGAAGGCCCATGACCGACTCCGTGTCTACGCTGTCGTGCGG
GAGATGCACGCAGGGGAGGCATGGATCGAAGTGACCGACGCGGAGAGAAC
AGAGGAGCAAACCCCCGAAGGCACTGTCCTGCACGCGATCAGCGCCATGA
AGCTCATCGACCGCGATGGCTGGGCCTTAGCCGTGAGTGAACTCGATCGT
GCCCTGCGACCGACGCTGCCCGGCCACGTGCGGCGCGAGCTCGAACAGAT
CCGTGATCAGTGCCAGGCGACCATAGACGCGCAGAACGCGCGCCGG
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