mRNA_P-canaliculata_contig10118.207.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10118.207.1
Unique NamemRNA_P-canaliculata_contig10118.207.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig10118.207.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 2.050e-73
Identity = 139/322 (43.17%), Postives = 188/322 (58.39%), Query Frame = 1
Query:    1 LGRNLFSVKQASRNGVVSIFGKHNPRLEAKNFTLPL--QELENDLYFP-PLDIVIGSS---------APELAMQAAATATLWHRRMGYLNRKSLDILKKVNNNRVSFDGTVPDCDVCAVGKSRQRAHPKTANQQV-----LVFTDLMGQFIPEALGGYKYVSKISDEHTRLTEIYLLKSKDGALHAYQSFVQSMVIPSGVHVERLRMDKVGKFIGNDFKDYCTQTGVFQEYVSTNTPQQIGMSERVGGTLAAMVRCMLADSRLSRFLWGELMFTAVYVGNSAPHSALNMQSPYKILTGAEPDLRILCIIGARAFVHIERRTK 915
            LG NLFSV  A  NGV S+F   NPRLE+ +  +P+  Q ++N       + I +G+           P+       TA LWHRRMG++N KSLD+L++   + + + G V DC  C +GKS Q+ HPK A   V     LVF D +G F P ALGG+KY +K  D+HT+  E+ L+K K  ++ A + F +  VIP    +  LR DK  +F    ++ YC   G+  ++ S NTP QIG +ER G T+  +VRCMLADS L   LWGELM TAVY+ N  PH+AL+  +PYK L G +  L  L ++GARAFVH E  TK
Sbjct:  495 LGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTK 816          
BLAST of mRNA_P-canaliculata_contig10118.207.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 5.950e-72
Identity = 138/322 (42.86%), Postives = 187/322 (58.07%), Query Frame = 1
Query:    1 LGRNLFSVKQASRNGVVSIFGKHNPRLEAKNFTLPL--QELENDLYFP-PLDIVIGSS---------APELAMQAAATATLWHRRMGYLNRKSLDILKKVNNNRVSFDGTVPDCDVCAVGKSRQRAHPKTANQQV-----LVFTDLMGQFIPEALGGYKYVSKISDEHTRLTEIYLLKSKDGALHAYQSFVQSMVIPSGVHVERLRMDKVGKFIGNDFKDYCTQTGVFQEYVSTNTPQQIGMSERVGGTLAAMVRCMLADSRLSRFLWGELMFTAVYVGNSAPHSALNMQSPYKILTGAEPDLRILCIIGARAFVHIERRTK 915
            LG NLFSV  A  NGV S+F   NPRLE+ +  +P+  Q ++N       + I +G+           P+       TA LWHRRMG++N KSLD+L++   + + + G V DC  C +GKS Q+ HPK A   V     LVF D +G F P ALGG+KY +K  D+HT+  E+ L+K K  ++ A + F +  VIP    +  LR DK  +F    ++ YC   G+  ++ S NTP QIG +ER G T+  +VRCMLADS L   LWGELM TAVY+ N  PH+AL+  +P K L G +  L  L ++GARAFVH E  TK
Sbjct:  495 LGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPNKALFGTDAHLGHLRVVGARAFVHEETHTK 816          
BLAST of mRNA_P-canaliculata_contig10118.207.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 7.660e-72
Identity = 138/323 (42.72%), Postives = 188/323 (58.20%), Query Frame = 1
Query:    4 GRNLFSVKQASRNGVVSIFGKHNPRLEAKNFTLPLQELEND------LYF--------PPLDIVIGSSAPELAMQAAATATLWHRRMGYLNRKSLDILKKVNNNRVSFDGTVPDCDVCAVGKSRQRAHPKTANQQVL-----VFTDLMGQFIPEALGGYKYVSKISDEHTRLTEIYLLKSKDGALHAYQSFVQSMVIPSGVHVERLRMDKVGKFIGNDFKDYCTQTGVFQEYVSTNTPQQIGMSERVGGTLAAMVRCMLADSRLSRFLWGELMFTAVYVGNSAPHSALNMQSPYKILTGAEPDLRILCIIGARAFVHIERRTK 915
            G NLFSV  A   GV ++F   NPRLE+ +   P+Q L  D      +Y         P    V+G +   LA++  + A LWHRRMG++N KSLD+L+K   N V + G V DC VC +GKS Q+ HPK     VL     V  D +G F P ALGG+KY +K  D+ T+  EI L+K +  ++ +   F +  V+P+G  +  LR D   +F   +F+ YC   G+  E+ S NTPQQ+G +ER G T+  +VRC+LADS L  FLWGEL+ TAVY+ N  PH+AL   +PYK L G +  L  L +IG+RAFVH E  T+
Sbjct:  208 GTNLFSVTLAMLKGVETLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPGGPTVLGDAPDALALKVES-ADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQDIGIKLEFASPNTPQQMGANERAGRTVLNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTR 529          
BLAST of mRNA_P-canaliculata_contig10118.207.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 5.790e-69
Identity = 135/323 (41.80%), Postives = 183/323 (56.66%), Query Frame = 1
Query:    1 LGRNLFSVKQASRNGVVSIFGKHNPRLEAKNFTLPL--QELENDLYFP-PLDIVIGSS---------APELAMQAAATATLWHRRMGYLNRKSLDILKKVNNNRVSFDGTVPDCDVCAVGKSRQRAHPKTANQQV-----LVFTDLMGQFIPEALGGYKYVSKISDEHTRLTEIYLLKSKDG-ALHAYQSFVQSMVIPSGVHVERLRMDKVGKFIGNDFKDYCTQTGVFQEYVSTNTPQQIGMSERVGGTLAAMVRCMLADSRLSRFLWGELMFTAVYVGNSAPHSALNMQSPYKILTGAEPDLRILCIIGARAFVHIERRTK 915
            LG NLFSV  A  NGV S+F   NPRLE+ +  +P+  Q ++N       + I +G+           P+       TA LWHRRMG++N KSLD+L++   + + + G V DC  C +GKS Q+ HPK A   V     LVF D  G F    LGG+KY +K  D+HT+  E+ L+K K   ++   + F +  VIP    +  LR  K  +F    ++ YC   G+  ++ S NTP QIG +ER G T+  +VRCMLADS L   LWGELM TAVY+ N  PH+AL+  +PYK L G +  L  L ++GARAFVH E  TK
Sbjct:  400 LGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDKTSCSIDGLELFNKGTVIPRSARIHVLRAGKGAEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTK 722          
BLAST of mRNA_P-canaliculata_contig10118.207.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 2.430e-68
Identity = 134/322 (41.61%), Postives = 182/322 (56.52%), Query Frame = 1
Query:    1 LGRNLFSVKQASRNGVVSIFGKHNPRLEAKNFTLPL--QELENDLYFP-PLDIVIGSS---------APELAMQAAATATLWHRRMGYLNRKSLDILKKVNNNRVSFDGTVPDCDVCAVGKSRQRAHPKTANQQV-----LVFTDLMGQFIPEALGGYKYVSKISDEHTRLTEIYLLKSKDGALHAYQSFVQSMVIPSGVHVERLRMDKVGKFIGNDFKDYCTQTGVFQEYVSTNTPQQIGMSERVGGTLAAMVRCMLADSRLSRFLWGELMFTAVYVGNSAPHSALNMQSPYKILTGAEPDLRILCIIGARAFVHIERRTK 915
            LG NLFSV  A  NGV S+F   NPRLE+ +  +P+  Q ++N       + I +G+           P+       TA LWHRRMG++N KSLD+L++   + + + G V DC  C +GKS Q+ HPK A   V     LVF D +G F P ALGG+KY +K  D+HT+  E+ L+K K  ++ A + F +  VIP    +  LR DK  +F    ++ YC   G+  ++ S NTP QIG +ER G T+  +VRCMLADS L   LWGELM TAVY+ N  PH+AL+           +  L  L ++GARAFVH E  TK
Sbjct:  617 LGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLPLRVETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNXXXXXXXFSTDAHLGHLRVVGARAFVHEETHTK 938          
BLAST of mRNA_P-canaliculata_contig10118.207.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 1.010e-65
Identity = 124/293 (42.32%), Postives = 173/293 (59.04%), Query Frame = 1
Query:   43 GVVSIFGKHNPRLEAKNFTLPLQELENDLYFPPLDIVIGSSAPELAMQAAATATLWHRRMGYLNRKSLDILKKVNNNRVSFDGTVPDCDVCAVGKSRQRAHPKTANQQVL--VFTDLMGQFIPEALGGYKYVSKISDEHTRLTEIYLLKSKDGALHAYQSFVQSMVIPSGVHVERLRMDKVGKFIGNDFKDYCTQTGVFQEYVSTNTPQQIGMSERVGGTLAAMVRCMLADSRLSRFLWGELMFTAVYVGNSAPHSALNMQSPYKILTGAEPDLRILCIIGARAFVHIERRTK 915
            GV ++F   NPRLE+ +   P+Q L        +D   G     + +++A    LWHRRMG++N K+LD+L+K   N V + G V  C VC +GKS Q+ HPK A   VL     D +G F P ALGG KY +K  D+ T+  EI L+K +  ++ +   F +  V+P+G  +  LR D+  +F   +F+ YC   G+  E+ S N PQQIG +ER G T+  +VRC+LADS L  FLWGEL+ TAVY+ N  PH+AL   +PYK L G +  L  L +IG+RAFVH E  T+
Sbjct:    4 GVATLFHPDNPRLESGDVFFPMQTLG-------VDATTGKRIYSIKVESA---DLWHRRMGHINGKNLDVLRKEQVNGVDYTGDVKYCSVCPLGKSAQQPHPKQATYGVLRPFQHDTLGPFAPTALGGSKYATKFVDQQTKWAEIVLMKDETCSVDSLALFNKGTVVPTGERIHCLRGDQGTEFTSAEFRQYCQDIGIKLEFASPNIPQQIGANERAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTR 286          
BLAST of mRNA_P-canaliculata_contig10118.207.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 1.190e-64
Identity = 123/297 (41.41%), Postives = 170/297 (57.24%), Query Frame = 1
Query:    4 GRNLFSVKQASRNGVVSIFGKHNPRLEAKNFTLPLQELENDLYFPPLDIVIGSSAPELAMQAAATATLWHRRMGYLNRKSLDILKKVNNNRVSFDGTVPDCDVCAVGKSRQRAHPKTANQQV-----LVFTDLMGQFIPEALGGYKYVSKISDEHTRLTEIYLLKSKDGALHAYQSFVQSMVIPSGVHVERLRMDKVGKFIGNDFKDYCTQTGVFQEYVSTNTPQQIGMSERVGGTLAAMVRCMLADSRLSRFLWGELMFTAVYVGNSAPHSALNMQSPYKILTGAEPDLRILCIIG 879
            G+  +  K A  +G   +F       E  +FT+ L E            + G + P        +A LWHRR+G+++ +SLDIL+KV  N V ++G +  CDVCAVG S+Q+ HPK A+        LV TDLMG F P ALGG+ Y+ K  D+H +  E++L+K K   + A Q F QS++ P  + +E +R DK G++    F  YC   G+   + STNTPQ+IG +ER+G TLA MVRC+LADS L  FLW EL  TA Y+ N +PHSA +  +P+K L G E  L  L  IG
Sbjct:  216 GKKPWKRKAAETSGHAVLFLNFKECDELYHFTMDLPETGE---------ISGVALP------VKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHFLWEELFMTASYLSNRSPHSASDNVTPFKALHGKEAYLGHLWAIG 497          
BLAST of mRNA_P-canaliculata_contig10118.207.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 1.980e-63
Identity = 124/332 (37.35%), Postives = 173/332 (52.11%), Query Frame = 1
Query:    1 LGRNLFSVKQASRNGVVSIFGKHNPRLEAKNFTLPLQELENDLYFPPLDIVIG---------SSAPELAMQAAATATL----------WHRRMGYLNRKSLDILKKVNNNRVSFDGTVPDCDVCAVGKSRQRAHPKTANQQV-----LVFTDLMGQFIPEAL---GGYKYVSKISDEHTRLTEIYLLKSKDGALHAYQSFVQSMVIPSGVHVERLRMDKVGKFIGNDFKDYCTQTGVFQEYVSTNTPQQIGMSERVGGTLAAMVRCMLADSRLSRFLWGELMFTAVYVGNSAPHSALNMQSPYKILTGAEPDLRILCIIGARAFVHIERRTK 915
            LGRN+FS     + G+  +  K  P L  +   +PL +   D     LDI            S  P        TA            WHRR+G+LN +SLDIL+K     V +  ++  C VC + K +Q  HPK + +++     LV  D MG   P A    G + Y  K++D++T++ E+YLL+ K     A  ++   +    G  +E +R DK G+  G++F+DYC  + +  EY +TNTPQQIG+SER G TLA + RC+L D      +WGELM TA Y+ N +PHSAL   +PY  L    PDL  L +IGARAFVH ER  K
Sbjct:  281 LGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLRNKSPDLSGLRVIGARAFVHHERYRK 612          
BLAST of mRNA_P-canaliculata_contig10118.207.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 7.420e-60
Identity = 124/343 (36.15%), Postives = 174/343 (50.73%), Query Frame = 1
Query:    1 LGRNLFSVK-----------QASRNGVVSIFGKHNPRLEAKNFTLPLQELENDLYFPPLDIVIG---------SSAPELAMQAAATATL----------WHRRMGYLNRKSLDILKKVNNNRVSFDGTVPDCDVCAVGKSRQRAHPKTANQQV-----LVFTDLMGQFIPEAL---GGYKYVSKISDEHTRLTEIYLLKSKDGALHAYQSFVQSMVIPSGVHVERLRMDKVGKFIGNDFKDYCTQTGVFQEYVSTNTPQQIGMSERVGGTLAAMVRCMLADSRLSRFLWGELMFTAVYVGNSAPHSALNMQSPYKILTGAEPDLRILCIIGARAFVHIERRTK 915
            LGRN+FS +              + G+  +  +  P L  ++  +PL +   D     LDI            S  P        TA            WHRR+G+LN +SLDIL+K     V +  ++  C VC + K +Q  HPK + +++     LV  D MG   P A    G + Y  KI+D++T++ E+YLL+ K     A  ++   +    G  +E +R DK G+  G++F+DYC  + +  EY +TNTPQQIG SER G TLA + RC+L D      +WGELM TA Y+ N +PHSAL   +PY  L    PDL  L +IGARAFVH ER  K
Sbjct:  322 LGRNIFSSRTLLLGMDFSPTSLLKKGLRCVVEESTPHLTIQDKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRK 664          
BLAST of mRNA_P-canaliculata_contig10118.207.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 1.430e-59
Identity = 113/244 (46.31%), Postives = 150/244 (61.48%), Query Frame = 1
Query:  196 TATLWHRRMGYLNRKSLDILKKVNNNRVSFDGTVPDCDVCAVGKSRQRAHPKTANQQV-----LVFTDLMGQFIPEALGGYKYVSKISDEHTRLTEIYLLKSKDGALHAYQSFVQSMVIPSGVHVERLRMDKVGKFIGNDFKDYCTQTGVFQEYVSTNTPQQIGMSERVGGTLAAMVRCMLADSRLSRFLWGELMFTAVYVGNSAPHSALNMQSPYKILTGAEPDLRILCIIGARAFVHIERRT 912
            +A LWHRRMG++N KSLDIL+K  NN V     V DC  CA+GKS Q+ HPK A   V     LVF D +G F P ALGG+KY +K  D+ T+  EI L+K K  ++ +   F +  V+P+G  +  LR D   +F   +F+ Y    G+  E+ S NTPQQIG +ER G T+  +VRC+LADS L  FLW EL+ TAVY+    PH+AL   +PYK L G +  L  L +I +RAFVH E ++
Sbjct:  525 SANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFTSAEFRQYYQDIGIKLEFASPNTPQQIGANERAGRTILNVVRCLLADSTLPNFLWWELIQTAVYLSTRVPHAALQNGTPYKALYGKDAYLGHLRVIVSRAFVHEETQS 768          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10118.207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE2.050e-7343.17Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE5.950e-7242.86Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KXM1_9PHAE7.660e-7242.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYB5_9PHAE5.790e-6941.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJH6_9PHAE2.430e-6841.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE1.010e-6542.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1J1_9PHAE1.190e-6441.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF6_9PHAE1.980e-6337.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KT84_9PHAE7.420e-6036.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE1.430e-5946.31Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10118contigP-canaliculata_contig10118:4795..5709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score162.9
Seed ortholog evalue2.3e-37
Seed eggNOG ortholog4081.Solyc11g062200.1.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size915
Cds size915
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.4451253-CDS-P-canaliculata_contig10118:4794..57091622815585.4451253-CDS-P-canaliculata_contig10118:4794..5709Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10118 4795..5709 -
1693494151.4576705-CDS-P-canaliculata_contig10118:4794..57091693494151.4576705-CDS-P-canaliculata_contig10118:4794..5709Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10118 4795..5709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10118.207.1prot_P-canaliculata_contig10118.207.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10118 4795..5709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10118.207.1

>prot_P-canaliculata_contig10118.207.1 ID=prot_P-canaliculata_contig10118.207.1|Name=mRNA_P-canaliculata_contig10118.207.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=305bp
LGRNLFSVKQASRNGVVSIFGKHNPRLEAKNFTLPLQELENDLYFPPLDI
VIGSSAPELAMQAAATATLWHRRMGYLNRKSLDILKKVNNNRVSFDGTVP
DCDVCAVGKSRQRAHPKTANQQVLVFTDLMGQFIPEALGGYKYVSKISDE
HTRLTEIYLLKSKDGALHAYQSFVQSMVIPSGVHVERLRMDKVGKFIGND
FKDYCTQTGVFQEYVSTNTPQQIGMSERVGGTLAAMVRCMLADSRLSRFL
WGELMFTAVYVGNSAPHSALNMQSPYKILTGAEPDLRILCIIGARAFVHI
ERRTK
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mRNA from alignment at P-canaliculata_contig10118:4795..5709-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10118.207.1 ID=mRNA_P-canaliculata_contig10118.207.1|Name=mRNA_P-canaliculata_contig10118.207.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=915bp|location=Sequence derived from alignment at P-canaliculata_contig10118:4795..5709- (Pelvetia canaliculata dioecious)
TTGGGGCGGAACCTCTTCTCGGTTAAGCAAGCGTCGCGTAACGGCGTCGT TTCCATCTTTGGTAAACACAATCCAAGGCTGGAGGCAAAAAACTTCACGC TTCCACTCCAAGAGCTTGAGAACGACCTGTACTTTCCCCCGTTGGACATT GTTATTGGGAGCAGCGCGCCGGAGCTCGCAATGCAAGCGGCGGCTACCGC CACCCTCTGGCATCGGCGGATGGGGTACCTCAACCGTAAGAGTCTGGACA TTCTGAAGAAGGTGAATAACAACAGAGTGAGCTTCGACGGAACCGTGCCA GACTGCGACGTTTGCGCCGTGGGGAAAAGCCGTCAACGGGCCCACCCCAA GACAGCCAACCAACAAGTTCTGGTCTTCACAGATCTAATGGGACAATTCA TACCTGAGGCGCTCGGGGGCTACAAGTATGTCTCCAAGATCTCCGACGAG CACACCAGGTTGACGGAGATATACCTTCTTAAGAGCAAGGATGGTGCTCT CCACGCATATCAGTCATTCGTACAGTCGATGGTGATTCCTAGCGGGGTTC ACGTCGAGCGGTTGAGGATGGATAAAGTAGGCAAGTTCATCGGCAACGAT TTCAAGGACTACTGCACCCAAACGGGAGTATTTCAGGAGTACGTCAGCAC TAACACGCCGCAGCAAATTGGCATGTCCGAGCGAGTCGGAGGGACGCTCG CGGCCATGGTCCGGTGCATGCTTGCTGACAGCCGACTATCAAGGTTTCTC TGGGGGGAATTGATGTTCACGGCAGTGTATGTGGGGAACAGTGCGCCGCA TTCGGCGCTCAATATGCAATCCCCATACAAAATACTGACGGGGGCCGAGC CAGACTTACGGATTCTTTGCATCATCGGCGCGAGGGCCTTTGTGCACATT GAGAGACGTACCAAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig10118:4795..5709-

>mRNA_P-canaliculata_contig10118.207.1 ID=mRNA_P-canaliculata_contig10118.207.1|Name=mRNA_P-canaliculata_contig10118.207.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1830bp|location=Sequence derived from alignment at P-canaliculata_contig10118:4795..5709- (Pelvetia canaliculata dioecious)
TTGGGGCGGAACCTCTTCTCGGTTAAGCAAGCGTCGCGTAACGGCGTCGT
TTCCATCTTTGGTAAACACAATCCAAGGCTGGAGGCAAAAAACTTCACGC
TTCCACTCCAAGAGCTTGAGAACGACCTGTACTTTCCCCCGTTGGACATT
GTTATTGGGAGCAGCGCGCCGGAGCTCGCAATGCAAGCGGCGGCTACCGC
CACCCTCTGGCATCGGCGGATGGGGTACCTCAACCGTAAGAGTCTGGACA
TTCTGAAGAAGGTGAATAACAACAGAGTGAGCTTCGACGGAACCGTGCCA
GACTGCGACGTTTGCGCCGTGGGGAAAAGCCGTCAACGGGCCCACCCCAA
GACAGCCAACCAACAAGTTCTGGTCTTCACAGATCTAATGGGACAATTCA
TACCTGAGGCGCTCGGGGGCTACAAGTATGTCTCCAAGATCTCCGACGAG
CACACCAGGTTGACGGAGATATACCTTCTTAAGAGCAAGGATGGTGCTCT
CCACGCATATCAGTCATTCGTACAGTCGATGGTGATTCCTAGCGGGGTTC
ACGTCGAGCGGTTGAGGATGGATAAAGTAGGCAAGTTCATCGGCAACGAT
TTCAAGGACTACTGCACCCAAACGGGAGTATTTCAGGAGTACGTCAGCAC
TAACACGCCGCAGCAAATTGGCATGTCCGAGCGAGTCGGAGGGACGCTCG
CGGCCATGGTCCGGTGCATGCTTGCTGACAGCCGACTATCAAGGTTTCTC
TGGGGGGAATTGATGTTCACGGCAGTGTATGTGGGGAACAGTGCGCCGCA
TTCGGCGCTCAATATGCAATCCCCATACAAAATACTGACGGGGGCCGAGC
CAGACTTACGGATTCTTTGCATCATCGGCGCGAGGGCCTTTGTGCACATT
GAGAGACGTACCAAATTGGGGCGGAACCTCTTCTCGGTTAAGCAAGCGTC
GCGTAACGGCGTCGTTTCCATCTTTGGTAAACACAATCCAAGGCTGGAGG
CAAAAAACTTCACGCTTCCACTCCAAGAGCTTGAGAACGACCTGTACTTT
CCCCCGTTGGACATTGTTATTGGGAGCAGCGCGCCGGAGCTCGCAATGCA
AGCGGCGGCTACCGCCACCCTCTGGCATCGGCGGATGGGGTACCTCAACC
GTAAGAGTCTGGACATTCTGAAGAAGGTGAATAACAACAGAGTGAGCTTC
GACGGAACCGTGCCAGACTGCGACGTTTGCGCCGTGGGGAAAAGCCGTCA
ACGGGCCCACCCCAAGACAGCCAACCAACAAGTTCTGGTCTTCACAGATC
TAATGGGACAATTCATACCTGAGGCGCTCGGGGGCTACAAGTATGTCTCC
AAGATCTCCGACGAGCACACCAGGTTGACGGAGATATACCTTCTTAAGAG
CAAGGATGGTGCTCTCCACGCATATCAGTCATTCGTACAGTCGATGGTGA
TTCCTAGCGGGGTTCACGTCGAGCGGTTGAGGATGGATAAAGTAGGCAAG
TTCATCGGCAACGATTTCAAGGACTACTGCACCCAAACGGGAGTATTTCA
GGAGTACGTCAGCACTAACACGCCGCAGCAAATTGGCATGTCCGAGCGAG
TCGGAGGGACGCTCGCGGCCATGGTCCGGTGCATGCTTGCTGACAGCCGA
CTATCAAGGTTTCTCTGGGGGGAATTGATGTTCACGGCAGTGTATGTGGG
GAACAGTGCGCCGCATTCGGCGCTCAATATGCAATCCCCATACAAAATAC
TGACGGGGGCCGAGCCAGACTTACGGATTCTTTGCATCATCGGCGCGAGG
GCCTTTGTGCACATTGAGAGACGTACCAAA
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