mRNA_P-canaliculata_contig10111.201.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10111.201.1
Unique NamemRNA_P-canaliculata_contig10111.201.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10111.201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10111contigP-canaliculata_contig10111:8478..8934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.8422663-CDS-P-canaliculata_contig10111:8477..88401622815584.8422663-CDS-P-canaliculata_contig10111:8477..8840Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10111 8478..8840 +
1693494151.1250083-CDS-P-canaliculata_contig10111:8477..88401693494151.1250083-CDS-P-canaliculata_contig10111:8477..8840Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10111 8478..8840 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.8556068-UTR-P-canaliculata_contig10111:8840..89341622815584.8556068-UTR-P-canaliculata_contig10111:8840..8934Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10111 8841..8934 +
1693494151.1330311-UTR-P-canaliculata_contig10111:8840..89341693494151.1330311-UTR-P-canaliculata_contig10111:8840..8934Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10111 8841..8934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10111.201.1prot_P-canaliculata_contig10111.201.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10111 8478..8840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10111.201.1

>prot_P-canaliculata_contig10111.201.1 ID=prot_P-canaliculata_contig10111.201.1|Name=mRNA_P-canaliculata_contig10111.201.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=121bp
LIFGPLHLLARAGEFVFGGEAKAFETPNVFRVLSLAILLYHTCCTGATRC
SPKNNLVLSDRPSYLSVIETGGKETCVFATVSPFCQSLSLEYRSLCTRIQ
LETEKIGVHASTSTAVYSIV*
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mRNA from alignment at P-canaliculata_contig10111:8478..8934+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10111.201.1 ID=mRNA_P-canaliculata_contig10111.201.1|Name=mRNA_P-canaliculata_contig10111.201.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=457bp|location=Sequence derived from alignment at P-canaliculata_contig10111:8478..8934+ (Pelvetia canaliculata dioecious)
TTGATCTTCGGCCCCCTGCACCTTCTTGCGCGCGCGGGCGAATTCGTTTT
CGGGGGCGAGGCGAAAGCATTTGAAACCCCGAACGTTTTTCGTGTGTTAT
CACTTGCTATCTTGCTGTATCACACTTGCTGCACTGGCGCTACTCGGTGC
AGTCCAAAGAATAATTTAGTTTTATCCGACAGGCCATCGTATTTGTCTGT
GATAGAAACGGGGGGGAAGGAAACTTGTGTCTTCGCGACCGTGTCGCCGT
TTTGCCAGTCTCTCTCTCTTGAGTATCGCTCGCTATGCACGCGGATCCAG
CTTGAAACGGAAAAAATTGGGGTTCACGCGAGTACCTCTACAGCAGTATA
CAGTATAGTATAGCATAGTAGACTACGTGCGCGACGAGGCCCGCCCTTGT
GTGTATCTACATGGAGAGGAGAGTACAGTACATGTTTTACTGTACCGCAT
CGTTGAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig10111:8478..8934+

>mRNA_P-canaliculata_contig10111.201.1 ID=mRNA_P-canaliculata_contig10111.201.1|Name=mRNA_P-canaliculata_contig10111.201.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at P-canaliculata_contig10111:8478..8934+ (Pelvetia canaliculata dioecious)
TTGATCTTCGGCCCCCTGCACCTTCTTGCGCGCGCGGGCGAATTCGTTTT
CGGGGGCGAGGCGAAAGCATTTGAAACCCCGAACGTTTTTCGTGTGTTAT
CACTTGCTATCTTGCTGTATCACACTTGCTGCACTGGCGCTACTCGGTGC
AGTCCAAAGAATAATTTAGTTTTATCCGACAGGCCATCGTATTTGTCTGT
GATAGAAACGGGGGGGAAGGAAACTTGTGTCTTCGCGACCGTGTCGCCGT
TTTGCCAGTCTCTCTCTCTTGAGTATCGCTCGCTATGCACGCGGATCCAG
CTTGAAACGGAAAAAATTGGGGTTCACGCGAGTACCTCTACAGCAGTATA
CAGTATAGTATAGTTGATCTTCGGCCCCCTGCACCTTCTTGCGCGCGCGG
GCGAATTCGTTTTCGGGGGCGAGGCGAAAGCATTTGAAACCCCGAACGTT
TTTCGTGTGTTATCACTTGCTATCTTGCTGTATCACACTTGCTGCACTGG
CGCTACTCGGTGCAGTCCAAAGAATAATTTAGTTTTATCCGACAGGCCAT
CGTATTTGTCTGTGATAGAAACGGGGGGGAAGGAAACTTGTGTCTTCGCG
ACCGTGTCGCCGTTTTGCCAGTCTCTCTCTCTTGAGTATCGCTCGCTATG
CACGCGGATCCAGCTTGAAACGGAAAAAATTGGGGTTCACGCGAGTACCT
CTACAGCAGTATACAGTATAGTATAG
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