mRNA_P-canaliculata_contig101101.199.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101101.199.1
Unique NamemRNA_P-canaliculata_contig101101.199.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 250 bits (639), Expect = 1.860e-83
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 1 
Query:   52 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
            TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    6 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 250 bits (638), Expect = 2.160e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   55 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 248 bits (634), Expect = 8.800e-83
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   55 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 249 bits (635), Expect = 9.920e-83
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   55 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 251 bits (640), Expect = 1.250e-82
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 1 
Query:   49 VTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
            V MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   72 VKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match: A0A3Q3G4G3_KRYMA (Histone H3 n=4 Tax=Clupeocephala TaxID=186625 RepID=A0A3Q3G4G3_KRYMA)

HSP 1 Score: 248 bits (632), Expect = 2.170e-82
Identity = 133/138 (96.38%), Postives = 137/138 (99.28%), Query Frame = 1 
Query:   49 VTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
            VTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    5 VTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 142
[Close]
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 5.090e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   55 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
            MARTKQTARKSTG +APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match: A0A3B5KKG2_TAKRU (Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=A0A3B5KKG2_TAKRU)

HSP 1 Score: 246 bits (629), Expect = 5.630e-82
Identity = 132/138 (95.65%), Postives = 137/138 (99.28%), Query Frame = 1 
Query:   49 VTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
            +TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 LTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
[Close]
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match: A0A0N5D645_THECL (Histone domain-containing protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A0N5D645_THECL)

HSP 1 Score: 247 bits (631), Expect = 6.250e-82
Identity = 134/141 (95.04%), Postives = 137/141 (97.16%), Query Frame = 1 
Query:   40 LANVTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
            L N  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   23 LTNCGMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 163
[Close]
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match: A0A5N4CQB1_CAMDR (Histone H3 n=12 Tax=Eutheria TaxID=9347 RepID=A0A5N4CQB1_CAMDR)

HSP 1 Score: 246 bits (629), Expect = 7.120e-82
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 1 
Query:   37 VLANVTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
            + AN  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    5 IKANQLMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P6C6_HETAK1.860e-8398.54Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
W4GZ05_9STRA2.160e-8399.26Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A1Z5K8H0_FISSO8.800e-8398.53Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA9.920e-8398.53Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
K0S7I6_THAOC1.250e-8298.55Histone domain-containing protein n=8 Tax=Bacillar... [more]
A0A3Q3G4G3_KRYMA2.170e-8296.38Histone H3 n=4 Tax=Clupeocephala TaxID=186625 RepI... [more]
D7G4I9_ECTSI5.090e-8298.53Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]
A0A3B5KKG2_TAKRU5.630e-8295.65Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
A0A0N5D645_THECL6.250e-8295.04Histone domain-containing protein n=2 Tax=Eukaryot... [more]
A0A5N4CQB1_CAMDR7.120e-8293.66Histone H3 n=12 Tax=Eutheria TaxID=9347 RepID=A0A5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101101contigP-canaliculata_contig101101:245..709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score255.8
Seed ortholog evalue1.3e-65
Seed eggNOG ortholog2880.D7FWI7
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categorysignal peptide
Exons1
Model size465
Cds size465
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.7904575-CDS-P-canaliculata_contig101101:244..7091622815584.7904575-CDS-P-canaliculata_contig101101:244..709Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101101 245..709 +
1693494151.1091397-CDS-P-canaliculata_contig101101:244..7091693494151.1091397-CDS-P-canaliculata_contig101101:244..709Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101101 245..709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101101.199.1prot_P-canaliculata_contig101101.199.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101101 245..709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101101.199.1

>prot_P-canaliculata_contig101101.199.1 ID=prot_P-canaliculata_contig101101.199.1|Name=mRNA_P-canaliculata_contig101101.199.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=155bp
SSLISLIQAAFTVLANVTMARTKQTARKSTGGKAPRKQLATKAARKSAPA
TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSD
LRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR
GERS*
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mRNA from alignment at P-canaliculata_contig101101:245..709+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101101.199.1 ID=mRNA_P-canaliculata_contig101101.199.1|Name=mRNA_P-canaliculata_contig101101.199.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=465bp|location=Sequence derived from alignment at P-canaliculata_contig101101:245..709+ (Pelvetia canaliculata dioecious)
AGCTCATTAATTTCCCTCATTCAGGCTGCATTTACAGTATTAGCAAACGT
TACCATGGCTCGCACCAAGCAGACCGCTCGTAAATCTACCGGAGGAAAGG
CCCCGCGAAAGCAGCTGGCCACCAAGGCTGCCCGTAAATCTGCGCCAGCC
ACTGGTGGTGTGAAGAAGCCTCACCGCTACAGGCCGGGCACAGTCGCCCT
TCGCGAGATCCGGCGTTACCAAAAGTCGACCGAGCTTCTTATCCGTAAGC
TACCCTTCCAGCGTCTGGTGCGCGAGATCGCACAGGATTTCAAAAGTGAT
CTTCGCTTCCAAGGCTCTGCCGTATTGGCTCTTCAGGAGGCCGCTGAGGC
ATACCTTGTAGGTCTATTTGAAGATACAAACCTGTGTGCCATCCACGCCA
AACGTGTCACCATCATGCCTAAAGACATTCAGCTGGCGAGGCGTATCCGC
GGAGAGCGCTCGTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig101101:245..709+

>mRNA_P-canaliculata_contig101101.199.1 ID=mRNA_P-canaliculata_contig101101.199.1|Name=mRNA_P-canaliculata_contig101101.199.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at P-canaliculata_contig101101:245..709+ (Pelvetia canaliculata dioecious)
AGCTCATTAATTTCCCTCATTCAGGCTGCATTTACAGTATTAGCAAACGT
TACCATGGCTCGCACCAAGCAGACCGCTCGTAAATCTACCGGAGGAAAGG
CCCCGCGAAAGCAGCTGGCCACCAAGGCTGCCCGTAAATCTGCGCCAGCC
ACTGGTGGTGTGAAGAAGCCTCACCGCTACAGGCCGGGCACAGTCGCCCT
TCGCGAGATCCGGCGTTACCAAAAGTCGACCGAGCTTCTTATCCGTAAGC
TACCCTTCCAGCGTCTGGTGCGCGAGATCGCACAGGATTTCAAAAGTGAT
CTTCGCTTCCAAGGCTCTGCCGTATTGGCTCTTCAGGAGGCCGCTGAGGC
ATACCTTGTAGGTCTATTTGAAGATACAAACCTGTGTGCCATCCACGCCA
AACGTGTCACCATCATGCCTAAAGACATTCAGCTGGCGAGGCGTATCCGC
GGAGAGCGCTCGTAAAGCTCATTAATTTCCCTCATTCAGGCTGCATTTAC
AGTATTAGCAAACGTTACCATGGCTCGCACCAAGCAGACCGCTCGTAAAT
CTACCGGAGGAAAGGCCCCGCGAAAGCAGCTGGCCACCAAGGCTGCCCGT
AAATCTGCGCCAGCCACTGGTGGTGTGAAGAAGCCTCACCGCTACAGGCC
GGGCACAGTCGCCCTTCGCGAGATCCGGCGTTACCAAAAGTCGACCGAGC
TTCTTATCCGTAAGCTACCCTTCCAGCGTCTGGTGCGCGAGATCGCACAG
GATTTCAAAAGTGATCTTCGCTTCCAAGGCTCTGCCGTATTGGCTCTTCA
GGAGGCCGCTGAGGCATACCTTGTAGGTCTATTTGAAGATACAAACCTGT
GTGCCATCCACGCCAAACGTGTCACCATCATGCCTAAAGACATTCAGCTG
GCGAGGCGTATCCGCGGAGAGCGCTCGTAA
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