mRNA_P-canaliculata_contig10097.182.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10097.182.1
Unique NamemRNA_P-canaliculata_contig10097.182.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: D7FZL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL4_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 3.350e-121
Identity = 203/319 (63.64%), Postives = 243/319 (76.18%), Query Frame = 1
Query:   37 EELEIASEGRRREKILQRVDKAVRRGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAA-KKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGT----------EGKSG---------------EVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMA--KPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGLQH 909
            EE +  ++GRRR++I ++V++AVRRG+IPKE    YA+LL+SP+MS+LC N+GWRARLLGD+ FMTKLAIEM+TGT +Q +AEYQKRGK+F +EL+FV ADTLTCLFANFAA+WLSCPTVAV A  KK  AK+GG LQ +LA+CPSNAFQKVV EGGVSK+FS+ +RGAAL++PMPKLF +GFGATL GYGL+AGLET  A R+               + K G                 KP VPVLGS LA+G FLAV TN+RYQ IAGAVEQR+FD M    PGLS L ST VRSANLYVGSLTIVD LR+VG+QH
Sbjct:  109 EEYDFVAKGRRRKRIFRKVERAVRRGKIPKECSSDYAKLLTSPLMSLLCKNSGWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKKFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVERGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDGLRYVGVQH 427          
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: A0A6H5LAU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU0_9PHAE)

HSP 1 Score: 360 bits (923), Expect = 7.780e-115
Identity = 194/295 (65.76%), Postives = 225/295 (76.27%), Query Frame = 1
Query:  109 RGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAA-KKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSR---------GEGT-EGKSG---------------EVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMA--KPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGLQH 909
            RG+IPKE    YA+LL+SP+MS+LC N+GWRARLLGD+ FMTKLAIEM+TGT +Q +AEYQKRGKRF +EL+FV ADTLTCLFANFAA+WLSCPTVAV A  KK  AK+GG LQ +LA+CPSNAFQKVV EGGVSK+FS+ +RGAAL++PMPKLF +GFGATL GYGL+AGLET  A  +          G+G  + K G                 KP VPVLGS LA+G FLAV TN+RYQ IAGAVEQR+FD M    PGLS L ST VRSANLYVGSLTIVDWLR+VG+Q 
Sbjct:    9 RGQIPKECSSDYAKLLTSPLMSLLCKNSGWRARLLGDTTFMTKLAIEMVTGTGAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWTTAAAAAPPVVAGKGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQQ 303          
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: A0A836CF64_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF64_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.120e-53
Identity = 113/228 (49.56%), Postives = 149/228 (65.35%), Query Frame = 1
Query:  271 QLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGG---ALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAM--AKPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGLQH*RSEDSIVRL 939
            Q++AEY+KR  +F KE +FVLAD LT  FANFAA+W SCPT+  + A    A S G   +L  ++ SCPSNAFQ+VV     +  +SL QRGAALI PMP+LF +GFGA   GYGL + +  I+ A    + T  K+ E     P+  SSLAIG FLAVS+N+RYQ+IAG +EQR  D    +KP +S   S  +R+ANLY+G+  IVDWLR VG+QH   ++  V +
Sbjct:    2 QVLAEYEKRRDKFFKEFDFVLADILTSCFANFAAVWASCPTMRPAIAGSADAASKGMFASLGRFMNSCPSNAFQRVVAP---ATHYSLAQRGAALIKPMPQLFVIGFGACAAGYGLTSLMSHIRLAL---DPTMVKNTED---APIFKSSLAIGAFLAVSSNLRYQIIAGGIEQRFLDVALASKPAVSNACSFVLRTANLYLGASMIVDWLRIVGVQHSAQDEEPVAV 220          
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: A0A6P5H2P0_ANACO (protein RETICULATA-RELATED 4, chloroplastic-like n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5H2P0_ANACO)

HSP 1 Score: 181 bits (459), Expect = 7.400e-47
Identity = 113/295 (38.31%), Postives = 171/295 (57.97%), Query Frame = 1
Query:   43 LEIASEGRRREKILQRVDKAVRRGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMA---KPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGLQH*RS 918
            L +A  GR  E + Q +  AV  GRIP E  + +A L  SP++  L    G++ RLL D  F+TK+AIE   G  ++  AE+++R  +F KEL+FV AD +  + A+F  +WL  PTV++   K  +A S G +  +  SCP NAFQ  +       S+S+ QR  A++    KLF VG GA+L+G G+   L  I+ A  +   +E +       VPVL +S+A G ++AVS+N+RYQ++AG +EQRM + +    K  LS +    VR+ N ++GSL  VD+ R++G+Q  R 
Sbjct:   88 LVLAEMGRGLESLPQDLAAAVEAGRIPGEIVRRFAELEKSPVLRWLLRFGGFKERLLADDLFLTKVAIECGVGIFTKTAAEWERRRDKFPKELDFVFADVVMAIIADFMLVWLPAPTVSL---KPPLALSAGPIAKFFYSCPDNAFQVALA----GTSYSVLQRVGAIVRNGSKLFVVGTGASLIGTGITNVLINIRKAFDKDFASEAED------VPVLSTSIAYGVYMAVSSNLRYQILAGIIEQRMLEPLLHNRKLALSAMCFA-VRTGNTFLGSLMWVDYARWIGIQKIRE 368          
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: A0A5J9U7T0_9POAL (Uncharacterized protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9U7T0_9POAL)

HSP 1 Score: 180 bits (456), Expect = 3.340e-46
Identity = 109/288 (37.85%), Postives = 171/288 (59.38%), Query Frame = 1
Query:   49 IASEGRRREKILQRVDKAVRRGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMAKPGLSKLGSTF--VRSANLYVGSLTIVDWLRFVGLQ 906
            +A  GR+ E +   +  AV+ GR+P E  + +A L +SP+   L    G++ RLL D  F+TK+A E   G  ++  AEY+KR  +F KEL+FV+ D +  + A+F  +WL  PTV++   K  +A + GA+  +  +CP NAFQ  +       S+S  QR  A++    KLFAVG  A+LVG G+   L      ++R   TE  +GEV+  +P++ +S+A G ++AVS+N+RYQ++AG +EQRM + +       LG+    VR+ N ++GSL  VD+ R+VG+Q
Sbjct:  117 LAQLGRKLESLPADLAAAVQAGRVPGEIVRRFADLEASPVFRWLLQFGGFKERLLADDLFLTKVAFECGIGIFTKTAAEYEKRKDKFMKELDFVICDVVMAIIADFMLVWLPAPTVSL---KPSIAGNAGAIAKFFYNCPDNAFQVALA----GSSYSFLQRIGAIVRNGAKLFAVGTSASLVGTGVTNAL-----IKARKAVTEDSAGEVEN-IPIVETSVAYGVYMAVSSNLRYQILAGVIEQRMLEPLLHRHKVALGALCFAVRTGNTFLGSLLWVDYARWVGVQ 391          
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: A0A833R1V6_9POAL (Protein RETICULATA-RELATED 4 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R1V6_9POAL)

HSP 1 Score: 179 bits (453), Expect = 7.270e-46
Identity = 114/294 (38.78%), Postives = 167/294 (56.80%), Query Frame = 1
Query:   43 LEIASEGRRREKILQRVDKAVRRGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMAKPGLSKLGSTF--VRSANLYVGSLTIVDWLRFVGLQH*RS 918
            L + + GR  E +   +  A++ GRIP +    +  L  SP+M  L    G++ RLL D  F+TK+ IE   G  ++  AEY+KR + F KEL+FVLAD +  L A+F  +WL  PTV++   K  +A S G +  +  SCP NAFQ V   G    S+S  QR  A++    KLF VG GA+L+G GL   L  I + ++  +   G    V   VP+L +S A G ++AVS+N+RYQ++AG +EQRM + +       LG+    VR+ N ++GSL  VD+ R+VG+Q  R 
Sbjct:  103 LVLGAAGRGLETLPSDLAAAIKAGRIPGDIVTRFLELEKSPLMRWLLQFGGFKERLLADDLFLTKVGIECGVGIFTKTAAEYEKRKENFLKELDFVLADVIMALVADFMLVWLPAPTVSL---KPPLAVSAGPIAKFFYSCPDNAFQVVALSG---TSYSFLQRVGAILRNGSKLFGVGTGASLIGTGLTNAL--IYSRKAFDKDFAG----VAEDVPILSTSAAYGVYMAVSSNLRYQILAGIIEQRMLEPLLHNQKLALGALCFAVRTGNTFLGSLMWVDYARWVGVQKVRE 384          
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: A0A7S3XYV0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYV0_HETAK)

HSP 1 Score: 174 bits (441), Expect = 3.820e-45
Identity = 104/270 (38.52%), Postives = 157/270 (58.15%), Query Frame = 1
Query:  100 AVRRGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMA--KPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGL 903
            AV  G++P +  + + +   S +M       G+R RL+ D +F+TK A+E+  G V QL AE ++RG +  ++L+FV+AD LTC+ ANF A+WL+ PT+A  A     A  G A++ +  SCP NAFQKV T G     F++ QR   L+   P+LF VGF A++ G+G   GL  ++   +     E   G     V VL  +L IG +L VSTN+RYQ++AG +E+R+  A+   +  L+  GS   R+ N +VGS  +V  L++ GL
Sbjct:   31 AVVAGKLPVDALERFLKFEKSAVMGGFMKTAGFRNRLMNDPSFLTKCAMEIGIGGVCQLAAEVKERGDKLLQQLDFVVADVLTCVIANFMAVWLAAPTLAALAPPPAAA--GNAVKRFFDSCPGNAFQKV-TPGRAP--FTVAQRCGTLVGAFPQLFLVGFAASVAGFGFTLGLSKLREKLNPASAEEEPLGGPAKEVQVLKPALVIGAYLGVSTNVRYQLVAGLLEERLLGALFANQQFLNTAGSFIFRTGNTFVGSSQMVMTLKWTGL 295          
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: UPI001CFB8E93 (protein RETICULATA-RELATED 4, chloroplastic-like n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFB8E93)

HSP 1 Score: 176 bits (445), Expect = 1.060e-44
Identity = 109/294 (37.07%), Postives = 166/294 (56.46%), Query Frame = 1
Query:   43 LEIASEGRRREKILQRVDKAVRRGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMAKPGLSKLGST--FVRSANLYVGSLTIVDWLRFVGLQH*RS 918
            L +A  GR  E + + +  AV  GR+P    + Y  L  +P+   L    G++ RLL D  F+TK+AIE   G  ++  AE ++R + F+KEL+FV AD +  + A+F  +WL  PTVA+ A    +A S G +  +L +CP NAFQ  +       S+S  QR  A++    KLFAVG GA+L+G G+   L  ++ A  +    E +       VPVL +S+A G ++AVS+N+RYQV+AG +EQR+ + +       L +    VR+ N ++GSL  VD+ R+VG+Q  R 
Sbjct:  111 LALAEAGRTLESLPKDLAAAVEAGRVPAAIVRRYFELEKAPVFRWLLQFGGFKERLLADDLFLTKVAIECGVGIFTKTAAELERRRENFTKELDFVFADVVMAIIADFMLVWLPAPTVALRAP---LAVSAGPIAKFLHNCPDNAFQVALA----GTSYSFLQRIGAIMRNGAKLFAVGTGASLIGTGITNALINVRKAFDKSFADEAED------VPVLSTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHQHKLILSAICFVVRTGNTFLGSLMWVDYARWVGIQKIRE 391          
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: UPI001C4F2427 (protein RETICULATA-RELATED 4, chloroplastic-like n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001C4F2427)

HSP 1 Score: 175 bits (444), Expect = 1.200e-44
Identity = 115/310 (37.10%), Postives = 172/310 (55.48%), Query Frame = 1
Query:   13 DKGEGAGDEE-----LEIASEGRRREKILQRVDKAVRRGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMA---KPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGLQH*RS 918
            D+GE AGD+      L +A  GR  + I   +  A+  GRIP      Y  L  SP+   L    G++ RLL D  F+ K+ +E   G  ++  AE+++R + F KEL+FVLAD    + A+F  +WL  PTV++   + G+A S G +  +  +CP NAFQ  +       S+SL QR  A++    KLFAVG  A+LVG G+   L   + A ++ +  E +       VP+L +S+A G ++AVS+N+RYQ++AG +EQRM + +    K  LS L    VR+ N ++GSL  VD+ R VG+Q  R 
Sbjct:   88 DEGEEAGDKNKGEAILALAEVGRSLDSIPSDLASAIENGRIPGSIVHRYFELEKSPLFRWLLQFGGFKERLLADDLFLAKVFMECGVGIFTKTAAEWERRRENFVKELDFVLADVFMAIIADFMLVWLPAPTVSL---RSGLAVSAGPIAKFFHNCPDNAFQIALA----GSSYSLLQRIGAIVRNGAKLFAVGTTASLVGTGVTNALIRARKAVAKDDADEAEE------VPLLATSVAYGVYMAVSSNLRYQILAGVIEQRMLEPLLHHHKVALSALCFA-VRTGNTFLGSLLWVDYARLVGIQKIRE 383          
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: C5YXG7_SORBI (Uncharacterized protein n=9 Tax=Andropogoneae TaxID=147429 RepID=C5YXG7_SORBI)

HSP 1 Score: 176 bits (446), Expect = 1.290e-44
Identity = 110/288 (38.19%), Postives = 170/288 (59.03%), Query Frame = 1
Query:   49 IASEGRRREKILQRVDKAVRRGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMAKPGLSKLG--STFVRSANLYVGSLTIVDWLRFVGLQ 906
            +A  GR+ E +   +  AV  GRIP E  + +  L +SP+   L    G++ RLL D  F+TK+AIE   G  ++  AEY+KR + F KEL+FV+AD +  + A+F  +WL  PTV++   +  +A + GA+  +  +CP NAFQ  ++      S+SL QR  A++    KLFAVG  A+LVG G+   L   + A S+        GEV+  +P++ +S+A G ++AVS+N+RYQV+AG +EQRM + +       L   S  VR+ N ++GSL  +D+ R+VG+Q
Sbjct:  139 LAQLGRKLESLPADLAAAVEGGRIPAEIVRRFVDLEASPVFRWLLQFGGFKERLLADDLFLTKVAIECGVGIFTKTAAEYEKRRENFVKELDFVIADVVMAIVADFMLVWLPAPTVSL---QPPLAVNSGAIAKFFYNCPDNAFQVALS----GTSYSLLQRAGAILRNGAKLFAVGTSASLVGTGVTNALIKARQAASKDF-----DGEVEN-LPIVSTSVAYGVYMAVSSNLRYQVLAGVIEQRMLEPLLHQHKLVLSAASFAVRTGNTFLGSLLWIDYARWVGVQ 413          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZL4_ECTSI3.350e-12163.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LAU0_9PHAE7.780e-11565.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CF64_9STRA1.120e-5349.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6P5H2P0_ANACO7.400e-4738.31protein RETICULATA-RELATED 4, chloroplastic-like n... [more]
A0A5J9U7T0_9POAL3.340e-4637.85Uncharacterized protein (Fragment) n=1 Tax=Eragros... [more]
A0A833R1V6_9POAL7.270e-4638.78Protein RETICULATA-RELATED 4 n=1 Tax=Carex littled... [more]
A0A7S3XYV0_HETAK3.820e-4538.52Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI001CFB8E931.060e-4437.07protein RETICULATA-RELATED 4, chloroplastic-like n... [more]
UPI001C4F24271.200e-4437.10protein RETICULATA-RELATED 4, chloroplastic-like n... [more]
C5YXG7_SORBI1.290e-4438.19Uncharacterized protein n=9 Tax=Andropogoneae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10097contigP-canaliculata_contig10097:1928..6297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.3
Seed ortholog evalue1.5e-90
Seed eggNOG ortholog2880.D7FZL4
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.Protein RETICULATA-related
EggNOG OGs28IK9@1,2QQX6@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size2443
Cds size744
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.6058135-UTR-P-canaliculata_contig10097:1927..20441622815583.6058135-UTR-P-canaliculata_contig10097:1927..2044Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10097 1928..2044 +
1693494150.418107-UTR-P-canaliculata_contig10097:1927..20441693494150.418107-UTR-P-canaliculata_contig10097:1927..2044Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10097 1928..2044 +
1622815583.6179366-UTR-P-canaliculata_contig10097:2249..23001622815583.6179366-UTR-P-canaliculata_contig10097:2249..2300Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10097 2250..2300 +
1693494150.4303095-UTR-P-canaliculata_contig10097:2249..23001693494150.4303095-UTR-P-canaliculata_contig10097:2249..2300Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10097 2250..2300 +
1622815583.6903603-UTR-P-canaliculata_contig10097:4766..62971622815583.6903603-UTR-P-canaliculata_contig10097:4766..6297Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10097 4767..6297 +
1693494150.4894025-UTR-P-canaliculata_contig10097:4766..62971693494150.4894025-UTR-P-canaliculata_contig10097:4766..6297Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10097 4767..6297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.6313822-CDS-P-canaliculata_contig10097:2300..23251622815583.6313822-CDS-P-canaliculata_contig10097:2300..2325Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10097 2301..2325 +
1693494150.43989-CDS-P-canaliculata_contig10097:2300..23251693494150.43989-CDS-P-canaliculata_contig10097:2300..2325Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10097 2301..2325 +
1622815583.64895-CDS-P-canaliculata_contig10097:2485..27391622815583.64895-CDS-P-canaliculata_contig10097:2485..2739Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10097 2486..2739 +
1693494150.4498668-CDS-P-canaliculata_contig10097:2485..27391693494150.4498668-CDS-P-canaliculata_contig10097:2485..2739Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10097 2486..2739 +
1622815583.659176-CDS-P-canaliculata_contig10097:4077..43891622815583.659176-CDS-P-canaliculata_contig10097:4077..4389Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10097 4078..4389 +
1693494150.459377-CDS-P-canaliculata_contig10097:4077..43891693494150.459377-CDS-P-canaliculata_contig10097:4077..4389Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10097 4078..4389 +
1622815583.6784863-CDS-P-canaliculata_contig10097:4613..47661622815583.6784863-CDS-P-canaliculata_contig10097:4613..4766Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10097 4614..4766 +
1693494150.468179-CDS-P-canaliculata_contig10097:4613..47661693494150.468179-CDS-P-canaliculata_contig10097:4613..4766Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10097 4614..4766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10097.182.1prot_P-canaliculata_contig10097.182.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10097 2301..4766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10097.182.1

>prot_P-canaliculata_contig10097.182.1 ID=prot_P-canaliculata_contig10097.182.1|Name=mRNA_P-canaliculata_contig10097.182.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=248bp
MSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKE
LEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCP
SNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAG
LETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIA
GAVEQRMFDAMAKPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGLQH*
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mRNA from alignment at P-canaliculata_contig10097:1928..6297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10097.182.1 ID=mRNA_P-canaliculata_contig10097.182.1|Name=mRNA_P-canaliculata_contig10097.182.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4370bp|location=Sequence derived from alignment at P-canaliculata_contig10097:1928..6297+ (Pelvetia canaliculata dioecious)
GAGGGTGGTGGGGACAAGGGAGAAGGGGCAGGGGACGAAGAGCTCGAGAT CGCTAGCGAGGGTCGTCGGCGGGAAAAAATCCTTCAGAGGGTGGACAAGG CTGTTCGGAGGGGACGGGTGAGCCTGCCGCTCGTGGTCGCCGAAAAATAA AGGGAGAAATAATATGCGTAAGGTTTTGCTCCCGGCTTGGGCTGATCATA TCATTTTGTTGTATGCAAGAAGAAAATATTGTAGAATCCCGTCGTTTGAT GTGACCCGCCTTCGATGTGATGTATGTGACTGACTCGTCATGTATGACTC GTGACGTGTGATGTGTGGACAGATCCCTAAGGAGTACAAGCAAGCTTACG CCCGGCTTCTGTCTTCACCAATAATGTCTGTCCTCTGCAGCAACAACGGT AAGCAGCCAATCCTCAAGCAGATGAAGATGCTACGTGTGCTTTCACGGTA TGTCGCGCTCGTAACATTGGGGGCAGGAAAGTTCTTTGGTAGTTATGCCT AACGCCTCCCTGAGACGAAACCCAACGCGCGGTATGCTGTTCCATCTTTT CCTGGAAGGTTGGAGAGCGCGACTGTTGGGCGACAGTGCGTTCATGACAA AACTGGCCATCGAGATGATCACGGGTACGGTGTCCCAGTTGGTGGCGGAG TACCAGAAACGTGGCAAGCGGTTTTCGAAGGAGCTCGAGTTTGTCCTCGC CGACACGCTGACGTGCCTCTTCGCCAACTTCGCCGCAATATGGCTGTCGT GCCCCACCGTGGCTGTGAGTGCTGCCAAGAAGGGAGTGGCCAAGTCCGGC GGAGCCTTGCAGGTAAGCCTTCCAGTTTGACTTCGGAAACCGTCAAGTGC ATTAGCTTGTGGTAAGTTGCTTGATTGTGTTCGCGCCGTAGAGATATACT GTACAGTAGTAGCCGGAAACTAGCCATGTAACGCGCTGCCTATTATAGCT TAGTGGGATAACTTTGACTACTACAAGATATAATACAGTGGGTTTGAGTC CCAAACTGAGATTAGAGGAGGTCGCTAATTTTCTGCTACTATATACAGTC ATTTATAGGCCTGCTTAGATTGGAATTATTTTACGAGGTTGAAAATTCTG GTTAAAAAAATGCCCCGGAAGCGGATAACGACCGCCAAACATTTTAGGCC ACATTCACAACGGGATCCCTTGAAAACAAAAGTCTTGGCTAGCGGAGACA GGAGGTGCTATCGCCCGGTGTAGAATTGCCACGGAGTAATGTCACTGTGT TCCCGCCTGCCTCTTGTAGTGTGGATAGAGTCTTTTTTACACTAACCATT AGCACCTGCTGTGCAAGGTGGTTCTCGACCTACAATGTAGACTGCAACGG CTTTGCACGGAGTAATATCACTTTGTTGGCTATCCATGCGGAGGATTCCA CACAGCTTGAAGACGATCTCCTCAAGGCTTTGCTTCCTCCGAGGTCTTGC TTCCTCCGAGGCTATTCCCTTCGTGAAAGTTGGCTGCTGTGTGACATTGC TGTTATTGTACGCATCACAGATGCAGCACCAGCAGCAGCCTGAGCACTTG CCGTCGTGACAGCAATATTTAGCAGTATTCAGATTGAATAGTTGCAGCTC CACTGGGTGACTCCACAGGGAATATATAGCTCCAAAGGGTGCCTCCATTG GGTATAACTCCAAAGGGTGCCTCCATTGGGTGTAGCTCCTTTGGGTTTAT AACTGCAAAGGGTGCCTCCACAGGGGAGCCCCACAGGTAAATGGCGTGCT TGTGCACAAGTTAGTGGGCGCGATACAAGCGCTGCTCGGCTGCTCGACAC AAACCTCACGTTGTTTGCCCTTGAACGTGCTTTTTGCAGAAGGTTGGATG GTGTTGGCATGTGCCTCTTGCCGAAGTTTGTATGGTAAAGAGTGAGTAGG GTGTAACGCTTTAAAAATGTTCATAAATTATGCCTATAGCCAACCGCAAC CAGATCTGTGGACCGACGGCCGGAATTCCGCGAGGTATAATGTTGGAAAT TACGCGCCGTGGCAGAGCTTCGGCGCGTCGCTCTCACTTGTTTTCCACTA TAAAAAGCGTTACACCCTACTCACTCTCTCACTAGTAATAGCAGTATAGT AATACTAAAATGTATGTATGTCTTCTTTCCTTGTCGCCTCCATCCTTCAG CATTGGTTGGCCTCCTGCCCGTCCAACGCCTTCCAAAAAGTGGTCACGGA AGGGGGGGTTTCCAAGAGCTTCAGCTTGTACCAACGGGGAGCCGCTCTGA TCATCCCCATGCCGAAGCTTTTCGCGGTCGGGTTCGGCGCAACCTTGGTC GGGTATGGTCTGGTTGCCGGTCTTGAAACTATTCAAGCGGCAAGAAGCAG GGGGGAAGGGACAGAGGGGAAATCTGGGGAAGTCAAGCCTGCTGTCCCCG TGCTGGGCTCCAGCTTGGCGATTGGAACGTTCCTGGCGGTTTCCACAAAT ATCCGGTACCAGGTACGCATTTTCCCGCACCACGCCTTGCGAGGCGTTCG GTGACCGTAGGATTGTTTCGATGTGTACCATATTTGGCCAGGTTGTAAGT ATCCTGGTTCGCCGTACGTAGGCGGTATACCGCAGCCAGAGGCAACACCT TCTTGCCTAGTGTTTTCCTCCGACTATATTTCGTCCGCCCGTTGTCGTGG GGTGCGGCTTGCGCCTCTTCGAATCGCGCCACACAGGTGATCGCGGGGGC TGTGGAGCAGAGGATGTTTGACGCCATGGCGAAACCCGGGTTGAGCAAAC TGGGCTCCACCTTTGTGCGATCGGCGAACCTGTACGTCGGCTCCCTTACC ATCGTCGACTGGCTCCGCTTCGTGGGCTTGCAACACTGACGTTCTGAAGA TTCTATTGTTAGGCTCTATTGATAGCCTCTGTAGGCGTGTGTTGCTTTGT GCGTCACGCAGATTCAGAACCACAGCTTTGGTCGTGCTTTAGTGTTGTTC GATATCAATGCTGACAAGATTGCGTCGCGAAACGGTCCCTCTTCTCTGTT CTGGCTGCGCTTCTGTGTGTATTCTGTTCTGTTTTTAAGTAGTGTAGTTG CGATGTCGCGACGTTGCGATTGCTCGAGATCCTTTCCGCTAGCACATGTG TCTTTGGGGCACTGTTGAGACGAGAGAGTATACTGCGAGCACTCTGTGCG ATTTACTTTCGCTGTTTTTTTTTCAAGACGTCCTGCAGTATGTTACAGTG TTAAGCTTGCTGGAAGCAGTGCGTGACGATTCGGAGATATTTTTGCCAAA CCTCATAACGATCCTCCGATGCTTTTCTAAATCAGCAAATCTGTGCCTGG TACGTGTTGAAAGCCAACAAAATAGGGTTTCCCTCTGGAGGCGTTTTCGG GGTCTCCACGGTACGTCTCACTGGTCAGAGACACTGGGTCTTACCTCATG ATTTGGATGGTGCAGCTGTAAGATATCCTCAACTGTGGGCTTCGCGTCGT GGGCGTGCGTTCTTATTGTATCAGTGAAGGCCATGCCACACAAATGCCGG GTCGACTCATGATTGCAACATTGTTTTATTTGAACGGATATTTGTGTATG GTTGTGGCTGCAGGCGCCGGAGGTAGCGCCCCCCGTCCCCCCATGGCCTT AAAAGAATAAAGGATGAAGTTTCATCACTCATCATGCTGTGCCGGGACTT TTACATCAATTTTTGCAGTTGTAGGCTGAGCGCTCGGGAATGGGACATCG CCAGGTTATTTGTTGTAGTGCGCTAGAAAGCATGTTTGTTGTGGGAGGAT GTTCGCAACTCATCCATGAGTGGACAGACGAATAGGACAGAGAAGTTCGG AAGACATGTACAGTTCTAGTGGTTTTCGTAGACAAGTGAAACGATGTACG CATTTACTGGCGCCGGTGGACTGGAGTTGTGGGAGTAGTGTACTCTCTCT TTGTGTAGTGACTATTAATGAACGGATAAGGATCGCTCATCGCTCTCGGG GGCCGTGATGCAGACAGTACACTAGCTAACCCTAGAGTTTATGTCGGAGA ATCCAGTACGACCGGCCACCATGCAAGGATAGGTTGGTGCGGTATGGGTA ATTTCTGAACGACGCGTCAAAGGAGGGCAGACGGGGGAAACAGACTGGCA AGAATGGGTACCGTCGAGGGCATCTGACCGGTGCGTGTGATGGTTCTAAG AATGAAACGCCAACCCTCCTGCTTTTTGGCGGATGAGTCGCAAACAGGGG TCTGTCCGTTGTTTTTGAAGAGTAAATCAGGCGTTATGTCGTAACTCGAT TCTGATGTGCGCTATTAATAGAAGTAGTCATAACGACTTCCCAATGGGGA TATTATTCAAGACGGTTGTCAAAAGAGTCGTGATTTGTCTTGAATATTGG TTACCCTTCAGCTTCAGTAC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10097:1928..6297+

>mRNA_P-canaliculata_contig10097.182.1 ID=mRNA_P-canaliculata_contig10097.182.1|Name=mRNA_P-canaliculata_contig10097.182.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1488bp|location=Sequence derived from alignment at P-canaliculata_contig10097:1928..6297+ (Pelvetia canaliculata dioecious)
ATGTCTGTCCTCTGCAGCAACAACGATGTCTGTCCTCTGCAGCAACAACG
GTTGGAGAGCGCGACTGTTGGGCGACAGTGCGTTCATGACAAAACTGGCC
ATCGAGATGATCACGGGTACGGTGTCCCAGTTGGTGGCGGAGTACCAGAA
ACGTGGCAAGCGGTTTTCGAAGGAGCTCGAGTTTGTCCTCGCCGACACGC
TGACGTGCCTCTTCGCCAACTTCGCCGCAATATGGCTGTCGTGCCCCACC
GTGGCTGTGAGTGCTGCCAAGAAGGGAGTGGCCAAGTCCGGCGGAGCCTT
GCAGGTTGGAGAGCGCGACTGTTGGGCGACAGTGCGTTCATGACAAAACT
GGCCATCGAGATGATCACGGGTACGGTGTCCCAGTTGGTGGCGGAGTACC
AGAAACGTGGCAAGCGGTTTTCGAAGGAGCTCGAGTTTGTCCTCGCCGAC
ACGCTGACGTGCCTCTTCGCCAACTTCGCCGCAATATGGCTGTCGTGCCC
CACCGTGGCTGTGAGTGCTGCCAAGAAGGGAGTGGCCAAGTCCGGCGGAG
CCTTGCAGCATTGGTTGGCCTCCTGCCCGTCCAACGCCTTCCAAAAAGTG
GTCACGGAAGGGGGGGTTTCCAAGAGCTTCAGCTTGTACCAACGGGGAGC
CGCTCTGATCATCCCCATGCCGAAGCTTTTCGCGGTCGGGTTCGGCGCAA
CCTTGGTCGGGTATGGTCTGGTTGCCGGTCTTGAAACTATTCAAGCGGCA
AGAAGCAGGGGGGAAGGGACAGAGGGGAAATCTGGGGAAGTCAAGCCTGC
TGTCCCCGTGCTGGGCTCCAGCTTGGCGATTGGAACGTTCCTGGCGGTTT
CCACAAATATCCGGTACCAGCATTGGTTGGCCTCCTGCCCGTCCAACGCC
TTCCAAAAAGTGGTCACGGAAGGGGGGGTTTCCAAGAGCTTCAGCTTGTA
CCAACGGGGAGCCGCTCTGATCATCCCCATGCCGAAGCTTTTCGCGGTCG
GGTTCGGCGCAACCTTGGTCGGGTATGGTCTGGTTGCCGGTCTTGAAACT
ATTCAAGCGGCAAGAAGCAGGGGGGAAGGGACAGAGGGGAAATCTGGGGA
AGTCAAGCCTGCTGTCCCCGTGCTGGGCTCCAGCTTGGCGATTGGAACGT
TCCTGGCGGTTTCCACAAATATCCGGTACCAGGTGATCGCGGGGGCTGTG
GAGCAGAGGATGTTTGACGCCATGGCGAAACCCGGGTTGAGCAAACTGGG
CTCCACCTTTGTGCGATCGGCGAACCTGTACGTCGGCTCCCTTACCATCG
TCGACTGGCTCCGCTTCGTGGGCTTGCAACACTGAGTGATCGCGGGGGCT
GTGGAGCAGAGGATGTTTGACGCCATGGCGAAACCCGGGTTGAGCAAACT
GGGCTCCACCTTTGTGCGATCGGCGAACCTGTACGTCGGCTCCCTTACCA
TCGTCGACTGGCTCCGCTTCGTGGGCTTGCAACACTGA
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