mRNA_P-canaliculata_contig100939.180.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100939.180.1
Unique NamemRNA_P-canaliculata_contig100939.180.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig100939.180.1 vs. uniprot
Match: D7FIK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK7_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 5.840e-11
Identity = 29/32 (90.62%), Postives = 32/32 (100.00%), Query Frame = 1
Query:   46 GGEWRKALHLLLRMINSGVKPDTIAYNASISA 141
            GGEWRKALHLLL+MINSG++PDTIAYNASISA
Sbjct:  669 GGEWRKALHLLLKMINSGIEPDTIAYNASISA 700          
BLAST of mRNA_P-canaliculata_contig100939.180.1 vs. uniprot
Match: A0A4D9DB36_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DB36_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.720e-7
Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 PNVVCYSSAITACEKGGEWRKALHLLLRMINSGVKPD 111
            PN+VCY+S ITA ++G +W+KALHLL+ M++SG  PD
Sbjct:  591 PNLVCYTSVITALQQGQQWQKALHLLVHMLSSGPVPD 627          
BLAST of mRNA_P-canaliculata_contig100939.180.1 vs. uniprot
Match: A0A7S2F2N3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F2N3_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.490e-6
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1
Query:    1 PNVVCYSSAITACEKGGEWRKALHLLLRMINSGVKPD 111
            PNV CY++A++AC KGG WRKA+ LL +M   GV+ D
Sbjct:  216 PNVDCYNAALSACTKGGHWRKAMGLLAQMKRQGVERD 252          
BLAST of mRNA_P-canaliculata_contig100939.180.1 vs. uniprot
Match: A0A7S1Z2D6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2D6_TRICV)

HSP 1 Score: 50.1 bits (118), Expect = 8.550e-6
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1
Query:   25 AITACEKGGEWRKALHLLLRMINSGVKPDTIAYNAS 132
            AI+ACEKGG+W KAL LL  M N  +KPD I+Y+A+
Sbjct:    1 AISACEKGGKWEKALDLLQDMQNYNIKPDVISYSAA 36          
BLAST of mRNA_P-canaliculata_contig100939.180.1 vs. uniprot
Match: A0A813G6D6_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G6D6_POLGL)

HSP 1 Score: 50.1 bits (118), Expect = 1.170e-5
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1
Query:    1 PNVVCYSSAITACEKGGEWRKALHLLLRMINS-GVKPDTIA 120
            PN VCY+SAI+ACEKGG+W+ AL LLL+ + S  ++PD  +
Sbjct:    5 PNEVCYNSAISACEKGGQWQLALELLLKEMPSIRLQPDAFS 45          
BLAST of mRNA_P-canaliculata_contig100939.180.1 vs. uniprot
Match: W7U458_9STRA (Pentatricopeptide repeat containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U458_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.170e-5
Identity = 20/33 (60.61%), Postives = 29/33 (87.88%), Query Frame = 1
Query:    1 PNVVCYSSAITACEKGGEWRKALHLLLRMINSG 99
            PN+VCY+S ITA ++G +W+KALHLL+ M++SG
Sbjct:  903 PNLVCYTSVITALQQGQQWQKALHLLVYMLSSG 935          
BLAST of mRNA_P-canaliculata_contig100939.180.1 vs. uniprot
Match: A0A7S2AIS8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AIS8_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 3.830e-5
Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 1
Query:   22 SAITACEKGGEWRKALHLLLRMINSGVKPDTIAYNAS 132
            +AI+ACEKGG+W KAL LL +M   GV P+ I++N++
Sbjct:    1 AAISACEKGGQWEKALELLRKMQERGVTPNRISFNSA 37          
BLAST of mRNA_P-canaliculata_contig100939.180.1 vs. uniprot
Match: A0A812LNB7_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812LNB7_9DINO)

HSP 1 Score: 48.1 bits (113), Expect = 5.470e-5
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1
Query:   19 SSAITACEKGGEWRKALHLLLRMINSGVKPDTIAYNA 129
            ++ I+ACEK GEWR ALHLL +M    V PD I++NA
Sbjct:   43 AARISACEKSGEWRMALHLLSKMPTGRVVPDVISFNA 79          
BLAST of mRNA_P-canaliculata_contig100939.180.1 vs. uniprot
Match: A0A7S4V7M8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V7M8_9DINO)

HSP 1 Score: 48.1 bits (113), Expect = 5.540e-5
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 1
Query:   16 YSSAITACEKGGEWRKALHLLLRMINSGVKPDTIAYN 126
            +++AI+ACEKGGEW+KA+ LL  M  S + PD I Y+
Sbjct:    2 FNAAISACEKGGEWQKAVALLAEMRRSALDPDAIVYS 38          
BLAST of mRNA_P-canaliculata_contig100939.180.1 vs. uniprot
Match: A0A812FZ19_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812FZ19_9DINO)

HSP 1 Score: 48.1 bits (113), Expect = 5.630e-5
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1
Query:   16 YSSAITACEKGGEWRKALHLLLRMINSGVKPDTIA 120
            YS+ I+ACEKGG+W+KAL LL  M  SGV P+ I+
Sbjct:  173 YSAGISACEKGGQWQKALDLLAEMPESGVTPNIIS 207          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100939.180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FIK7_ECTSI5.840e-1190.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9DB36_9STRA2.720e-759.46Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2F2N3_9STRA8.490e-656.76Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1Z2D6_TRICV8.550e-661.11Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A813G6D6_POLGL1.170e-556.10Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
W7U458_9STRA1.170e-560.61Pentatricopeptide repeat containing protein n=1 Ta... [more]
A0A7S2AIS8_9STRA3.830e-554.05Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A812LNB7_9DINO5.470e-556.76Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A7S4V7M8_9DINO5.540e-554.05Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A812FZ19_9DINO5.630e-560.00Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100939contigP-canaliculata_contig100939:767..925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue2.3e-09
Seed eggNOG ortholog2880.D7FIK7
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.4170697-CDS-P-canaliculata_contig100939:766..9251622815583.4170697-CDS-P-canaliculata_contig100939:766..925Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100939 767..925 -
1693494150.332222-CDS-P-canaliculata_contig100939:766..9251693494150.332222-CDS-P-canaliculata_contig100939:766..925Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100939 767..925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100939.180.1prot_P-canaliculata_contig100939.180.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100939 767..925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100939.180.1

>prot_P-canaliculata_contig100939.180.1 ID=prot_P-canaliculata_contig100939.180.1|Name=mRNA_P-canaliculata_contig100939.180.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=53bp
PNVVCYSSAITACEKGGEWRKALHLLLRMINSGVKPDTIAYNASISARWT
KN*
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mRNA from alignment at P-canaliculata_contig100939:767..925-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100939.180.1 ID=mRNA_P-canaliculata_contig100939.180.1|Name=mRNA_P-canaliculata_contig100939.180.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at P-canaliculata_contig100939:767..925- (Pelvetia canaliculata dioecious)
CCCAACGTGGTGTGCTATAGCTCCGCGATCACCGCGTGTGAGAAGGGCGG CGAGTGGCGTAAAGCCCTCCATCTGCTCCTGAGGATGATCAACTCCGGGG TGAAGCCCGACACCATCGCCTACAACGCGTCCATCAGCGCTAGGTGGACA AAAAACTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig100939:767..925-

>mRNA_P-canaliculata_contig100939.180.1 ID=mRNA_P-canaliculata_contig100939.180.1|Name=mRNA_P-canaliculata_contig100939.180.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at P-canaliculata_contig100939:767..925- (Pelvetia canaliculata dioecious)
CCCAACGTGGTGTGCTATAGCTCCGCGATCACCGCGTGTGAGAAGGGCGG
CGAGTGGCGTAAAGCCCTCCATCTGCTCCTGAGGATGATCAACTCCGGGG
TGAAGCCCGACACCATCGCCTACAACGCGTCCATCAGCGCTAGGTGGACA
AAAAACTGACCCAACGTGGTGTGCTATAGCTCCGCGATCACCGCGTGTGA
GAAGGGCGGCGAGTGGCGTAAAGCCCTCCATCTGCTCCTGAGGATGATCA
ACTCCGGGGTGAAGCCCGACACCATCGCCTACAACGCGTCCATCAGCGCT
AGGTGGACAAAAAACTGA
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