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Homology
BLAST of mRNA_P-canaliculata_contig10093.175.1 vs. uniprot
Match: D7FQ85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ85_ECTSI) HSP 1 Score: 132 bits (333), Expect = 6.950e-29 Identity = 79/174 (45.40%), Postives = 116/174 (66.67%), Query Frame = 3
Query: 798 EHSKRTEQAKRLALEVARLRSSLRGSNYDLAVERKARRRLENDHREKVLAWENEREAIVSARHDAERALRTAQEELKEMRKQDEARCAKAKSEAAIGEASHRKAASALNGVIEVQDRLVRALRTEVDLIKRAKVVAQGDAREAGERLGLFVQGFQMWRDRAMLLEARMAELDHP 1319
EH K +QAKRLALEVARLRSSLR + +L ER R RLE++ ++ WE ER +V+++ +AER RTA+E++ + +++ R + SE E KA A+NGV++VQDRL++ALRTE+++ RA+ AQ +A EA ++L L+V F +WR+RA LE + +L HP
Sbjct: 343 EHQKTRDQAKRLALEVARLRSSLRTTTSELNTERSTRVRLEDEWWRRMQEWEEERGRLVASKQEAERTARTAEEDVARLLVKEKDREGEVASERLARETRQEKADIAMNGVVKVQDRLIQALRTELEMTDRARQAAQDNALEAKDQLRLYVDDFLLWRNRAKHLEGLLIDLGHP 516
BLAST of mRNA_P-canaliculata_contig10093.175.1 vs. uniprot
Match: A0A6H5KFY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY5_9PHAE) HSP 1 Score: 126 bits (317), Expect = 7.260e-27 Identity = 78/181 (43.09%), Postives = 116/181 (64.09%), Query Frame = 3
Query: 774 EGVKNAIEEHSKRTEQAKRLALEVARLRSSLRGSNYDLAVERKARRRLENDHREKVLAWENEREAIVSARHDAERALRTAQEELKEMRKQDEARCAKAKSEAAIGEASHRKAASALNGVIEVQDRLVRALRTEVDLIKRAKVVAQGDAREAGERLGLFVQGFQMWRDRAMLLEARMAELDH 1316
+G + EH +QAKRLALEVARLRSSLR + +L ER R RLE++ ++ WE + +V+++ +AERA RTA+E++ + +++ R + SE E+ KA A+ GV+ VQDRL++ALRTE++L A+ AQ +A EA ++L L+V F +WR+RA LEA + EL H
Sbjct: 324 QGDETRASEHQNTRDQAKRLALEVARLRSSLRATTSELNTERSTRVRLEDEWWRRMQEWEEKHGCLVASKQEAERAARTAEEDMARLLVKEKNREEEVASERLAQESRQEKADIAMKGVVTVQDRLIQALRTELELTDSARRAAQDNALEAKDQLRLYVNDFLLWRNRAKHLEALLIELGH 504
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_007070.1 |
| Exons | 6 |
| Model size | 1662 |
| Cds size | 1653 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815583.0631745-UTR-P-canaliculata_contig10093:1153..1161 | 1622815583.0631745-UTR-P-canaliculata_contig10093:1153..1161 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10093 1154..1161 + |
| 1693494150.12508-UTR-P-canaliculata_contig10093:1153..1161 | 1693494150.12508-UTR-P-canaliculata_contig10093:1153..1161 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10093 1154..1161 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815583.0783904-CDS-P-canaliculata_contig10093:1161..1216 | 1622815583.0783904-CDS-P-canaliculata_contig10093:1161..1216 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10093 1162..1216 + |
| 1693494150.1411319-CDS-P-canaliculata_contig10093:1161..1216 | 1693494150.1411319-CDS-P-canaliculata_contig10093:1161..1216 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10093 1162..1216 + |
| 1622815583.0900488-CDS-P-canaliculata_contig10093:1664..2173 | 1622815583.0900488-CDS-P-canaliculata_contig10093:1664..2173 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10093 1665..2173 + |
| 1693494150.1516383-CDS-P-canaliculata_contig10093:1664..2173 | 1693494150.1516383-CDS-P-canaliculata_contig10093:1664..2173 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10093 1665..2173 + |
| 1622815583.1018302-CDS-P-canaliculata_contig10093:2239..2587 | 1622815583.1018302-CDS-P-canaliculata_contig10093:2239..2587 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10093 2240..2587 + |
| 1693494150.161124-CDS-P-canaliculata_contig10093:2239..2587 | 1693494150.161124-CDS-P-canaliculata_contig10093:2239..2587 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10093 2240..2587 + |
| 1622815583.114131-CDS-P-canaliculata_contig10093:2890..3013 | 1622815583.114131-CDS-P-canaliculata_contig10093:2890..3013 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10093 2891..3013 + |
| 1693494150.1731446-CDS-P-canaliculata_contig10093:2890..3013 | 1693494150.1731446-CDS-P-canaliculata_contig10093:2890..3013 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10093 2891..3013 + |
| 1622815583.1244707-CDS-P-canaliculata_contig10093:3310..3475 | 1622815583.1244707-CDS-P-canaliculata_contig10093:3310..3475 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10093 3311..3475 + |
| 1693494150.1820831-CDS-P-canaliculata_contig10093:3310..3475 | 1693494150.1820831-CDS-P-canaliculata_contig10093:3310..3475 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10093 3311..3475 + |
| 1622815583.1377976-CDS-P-canaliculata_contig10093:3787..4240 | 1622815583.1377976-CDS-P-canaliculata_contig10093:3787..4240 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10093 3788..4240 + |
| 1693494150.1915114-CDS-P-canaliculata_contig10093:3787..4240 | 1693494150.1915114-CDS-P-canaliculata_contig10093:3787..4240 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10093 3788..4240 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10093.175.1 >prot_P-canaliculata_contig10093.175.1 ID=prot_P-canaliculata_contig10093.175.1|Name=mRNA_P-canaliculata_contig10093.175.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=551bp
MTALALVPLCDHVPDWQPGKATRLERSSDDGELEGHIPYSSTGWVPDVQA RSDGGSSEKKDDVNKMDCGRGRPTKKEDGSLRGTRTKPNQSVCSDGGAPH RQEHRVPCLSNDSPGAPSDGGYELEKKPTPLSSAEELSTSIDEDHGEKRL NGMADVGRAKNLCRSKRHHKNSVPVLREGGNTGSLSTGYDSDIKAEKSKS KSSPRTSASRVMALVKETIDTSLEAAAECLPSVTEEPVHRRCKTVDRRGD RECHTEGVKNAIEEHSKRTEQAKRLALEVARLRSSLRGSNYDLAVERKAR RRLENDHREKVLAWENEREAIVSARHDAERALRTAQEELKEMRKQDEARC AKAKSEAAIGEASHRKAASALNGVIEVQDRLVRALRTEVDLIKRAKVVAQ GDAREAGERLGLFVQGFQMWRDRAMLLEARMAELDHPQRQPNDYVDPGHS QNRPIQSALSGQNYVSMAKQAKGGERSLSMGRIVKWNDVECPESNRLVEL DGEHARGSDDQDSSLGGGKCQRGMEGGRRCSLRDAVEALQDSDMVRRSDL A back to topmRNA from alignment at P-canaliculata_contig10093:1154..4240+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig10093.175.1 ID=mRNA_P-canaliculata_contig10093.175.1|Name=mRNA_P-canaliculata_contig10093.175.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3087bp|location=Sequence derived from alignment at P-canaliculata_contig10093:1154..4240+ (Pelvetia canaliculata dioecious) CGCTGCATATGACCGCGTTGGCCTTGGTACCTCTTTGTGACCACGTACCG
GATTGGCAGCCAGGTATAGTACTGGGTATGGTTGAGGCCCGATCGGCTGA
TGTGGAGAATACAACAACAACAGCACTTACTGTGCGAGAAACAGGCATAT
CTACCAGGCATCTCGAATAAATACATATTTTTGCTCAAAGGGACGTGATG
TTGAGGTGGAAGGCCTCGCCGCAGTGTCAACTTCCAACGCAAGCACACAC
GAAGAGAAGATAACATAATAACAGCACTTCCAAGCCAACCAGAAACCCGC
ACGTTCCGAGCACGACACGTTGTTCCAACCGTAGTTGTCGAAAGTTTATC
GCCCGCGAGACGCGAGCGCTCGTAAGGAGACCACGAAATGTGTATTTTGT
CATTACTACTGTTGTTAATGTATGAATCCTGACGTAGAGGCCTTGCCTTC
GACAGGATCCTAGATTGCGTGGATGCTTGATTGATGAGAACGTTAAGCTT
CGCGCCAACAGGGAAAGCGACGCGACTAGAGAGGTCTTCAGATGATGGGG
AACTTGAAGGCCACATCCCATATTCATCCACCGGGTGGGTGCCGGACGTC
CAAGCGAGGTCGGACGGGGGATCTAGCGAGAAAAAAGACGACGTAAACAA
GATGGACTGCGGTCGTGGAAGACCAACCAAGAAAGAAGACGGGAGTCTGC
GTGGGACGAGAACAAAGCCCAACCAATCCGTTTGCTCTGACGGGGGCGCT
CCGCACCGGCAAGAGCATCGGGTTCCTTGTTTGTCAAATGATTCTCCGGG
GGCACCTAGCGACGGGGGCTACGAACTTGAAAAGAAACCGACGCCGTTGT
CGTCGGCCGAGGAACTCAGCACGTCGATTGACGAAGACCATGGAGAAAAA
AGACTGAACGGGATGGCTGACGTCGGGCGAGCTAAAAACCTCTGCCGCAG
CAAAAGACACCACAAGAATTCCGTCCCAGTACTCCGCGAGGGTGGAAACA
CTGGGAGTCTCTCAACAGGGGTTGGAAAATCCTCAAGAGCTGCAGATGGG
CACCTTCCAGGCGCCGGTGAAGAATGGCAGGATGAGTATGACAGTGATAT
TAAGGCGGAGAAGTCGAAATCGAAGTCGTCACCGCGAACATCGGCATCGA
GGGTCATGGCGTTGGTAAAAGAAACGATCGATACCTCGCTCGAAGCGGCG
GCGGAATGCTTACCTTCTGTCACAGAAGAGCCGGTACACCGGCGGTGCAA
GACTGTTGATAGGAGGGGAGACCGAGAGTGTCATACGGAGGGTGTTAAAA
ACGCGATTGAAGAGCATTCCAAAAGGACGGAACAAGCAAAGCGACTGGCG
CTGGAAGTTGCAAGGCTTCGATCCTCTTTACGTGGGAGCAACTATGACCT
CGCGGTGGAACGGAAAGCGCGTAGGCGGTTGGAGGTGCGAGAACCAATCC
CCAACTTCCCAGTGAAGGATCACGTTTCGCTAGATATCAGATTGGACGGA
GGTTCCGAGCCTTGCTCTTAATCGTTTTCTTCCCGACTTCCAAAGGGTAA
GACGGGGATGAACAAGATACACAAGAATATTACATTCGTTATTGTCGTGA
ACACCACGTCAAGAACAGGACGAATGTACCTCTGGAAGAAATGTACACCC
GTCTGCCATTCTTTTCGCGTATCCTGTATATTCTTCTATACCTGGTATAC
AACCCTTTCAACCATTACTCCCCCATCTCGACCACAGAACGACCACAGGG
AAAAAGTGTTGGCGTGGGAAAACGAGCGCGAGGCCATCGTGTCCGCCAGG
CATGACGCTGAACGGGCGTTGCGAACAGCCCAAGAGGAGCTGAAAGAGAT
GCGGAAGCAGGTTTACGTTACATTCGCAACCTGTTCCTGATTGTATGCGC
AGAGGCCGTTAGTCCCCCCTTCTGCGTTGCGGTAGGCGTAGTTTGTTAAT
CGTGTGCATACCAAACTTGTATTCAGGTACACCACAGTTAGCTTTCTCAT
TGCATATATCAGCTATTAACCCCACCCCTCTAAGCCTCCTTGCACTCAAA
CCTTTCCTGCAATTGGCACCCTCCCCCGCCCCTCCCCCAATGTCCCCTAT
CTCTTTCCGCTACTCACATGGAATCCTTTTGCGACTGACATACGTACTTT
AATGAAGGACGAGGCTCGTTGTGCGAAGGCCAAATCCGAAGCCGCGATCG
GCGAGGCTTCGCATCGCAAGGCGGCAAGCGCACTCAACGGCGTGATTGAG
GTCCAGGACCGGCTTGTGCGAGCGCTACGGACCGAAGTAGATCTAATCAA
GAGAGCGAAAGTGGTGGCTCAGGTGCGCAGCCCTCAGAATGAATATTTCA
TTTCACCTTTGTTTCTATGCCACGTAAGACGGCAACCGACGTGTGTGTGT
GTTTAGCTATCGTACCGACTCTCCCGTATCTTTTCACTCCCGCTTGTTGG
AAGTTGACACTGTCGCGAGAAAAGGTTTGCATCAAACTTTGCACGCTCGC
CGGAATTTTCCAAACGAAGAAAAAAAGCTATCCCTGTTGTCCCACGTTTT
ATTAATATTAATACCGGGAATTTTCCAAGCGGAAAAAAAAAGCTATCCCG
ATCGTCCCACGTATTACCTTCTATGTTGGGACAGGGCGATGCACGCGAGG
CCGGCGAGAGACTAGGTCTCTTTGTCCAAGGCTTCCAAATGTGGCGAGAT
CGTGCCATGCTCCTGGAGGCTCGCATGGCAGAACTGGATCACCCGCAACG
TCAGCCGAACGACTACGTTGACCCGGGCCATTCGCAGAATAGACCGATTC
AATCGGCCTTGTCTGGGCAAAATTATGTTTCAATGGCCAAGCAGGCAAAA
GGGGGCGAACGATCTCTGTCGATGGGTCGGATTGTAAAATGGAACGATGT
CGAGTGTCCGGAAAGCAATCGCCTGGTCGAGCTTGACGGTGAACATGCTA
GAGGAAGCGACGACCAAGACAGTAGCCTGGGAGGCGGGAAGTGCCAACGG
GGCATGGAGGGGGGCAGACGCTGCAGTCTCCGCGACGCGGTCGAGGCGCT
CCAAGACAGCGACATGGTACGAAGGAGCGATCTTGCC back to topCoding sequence (CDS) from alignment at P-canaliculata_contig10093:1154..4240+ >mRNA_P-canaliculata_contig10093.175.1 ID=mRNA_P-canaliculata_contig10093.175.1|Name=mRNA_P-canaliculata_contig10093.175.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3306bp|location=Sequence derived from alignment at P-canaliculata_contig10093:1154..4240+ (Pelvetia canaliculata dioecious) ATGACCGCGTTGGCCTTGGTACCTCTTTGTGACCACGTACCGGATTGGCA GCCAGATGACCGCGTTGGCCTTGGTACCTCTTTGTGACCACGTACCGGAT TGGCAGCCAGGGAAAGCGACGCGACTAGAGAGGTCTTCAGATGATGGGGA ACTTGAAGGCCACATCCCATATTCATCCACCGGGTGGGTGCCGGACGTCC AAGCGAGGTCGGACGGGGGATCTAGCGAGAAAAAAGACGACGTAAACAAG ATGGACTGCGGTCGTGGAAGACCAACCAAGAAAGAAGACGGGAGTCTGCG TGGGACGAGAACAAAGCCCAACCAATCCGTTTGCTCTGACGGGGGCGCTC CGCACCGGCAAGAGCATCGGGTTCCTTGTTTGTCAAATGATTCTCCGGGG GCACCTAGCGACGGGGGCTACGAACTTGAAAAGAAACCGACGCCGTTGTC GTCGGCCGAGGAACTCAGCACGTCGATTGACGAAGACCATGGAGAAAAAA GACTGAACGGGATGGCTGACGTCGGGCGAGCTAAAAACCTCTGCCGCAGC AAAAGACACCACAAGAATTCCGTCCCAGTACTCCGCGAGGGTGGAAACAC TGGGAGTCTCTCAACAGGGGGAAAGCGACGCGACTAGAGAGGTCTTCAGA TGATGGGGAACTTGAAGGCCACATCCCATATTCATCCACCGGGTGGGTGC CGGACGTCCAAGCGAGGTCGGACGGGGGATCTAGCGAGAAAAAAGACGAC GTAAACAAGATGGACTGCGGTCGTGGAAGACCAACCAAGAAAGAAGACGG GAGTCTGCGTGGGACGAGAACAAAGCCCAACCAATCCGTTTGCTCTGACG GGGGCGCTCCGCACCGGCAAGAGCATCGGGTTCCTTGTTTGTCAAATGAT TCTCCGGGGGCACCTAGCGACGGGGGCTACGAACTTGAAAAGAAACCGAC GCCGTTGTCGTCGGCCGAGGAACTCAGCACGTCGATTGACGAAGACCATG GAGAAAAAAGACTGAACGGGATGGCTGACGTCGGGCGAGCTAAAAACCTC TGCCGCAGCAAAAGACACCACAAGAATTCCGTCCCAGTACTCCGCGAGGG TGGAAACACTGGGAGTCTCTCAACAGGGTATGACAGTGATATTAAGGCGG AGAAGTCGAAATCGAAGTCGTCACCGCGAACATCGGCATCGAGGGTCATG GCGTTGGTAAAAGAAACGATCGATACCTCGCTCGAAGCGGCGGCGGAATG CTTACCTTCTGTCACAGAAGAGCCGGTACACCGGCGGTGCAAGACTGTTG ATAGGAGGGGAGACCGAGAGTGTCATACGGAGGGTGTTAAAAACGCGATT GAAGAGCATTCCAAAAGGACGGAACAAGCAAAGCGACTGGCGCTGGAAGT TGCAAGGCTTCGATCCTCTTTACGTGGGAGCAACTATGACCTCGCGGTGG AACGGAAAGCGCGTAGGCGGTTGGAGTATGACAGTGATATTAAGGCGGAG AAGTCGAAATCGAAGTCGTCACCGCGAACATCGGCATCGAGGGTCATGGC GTTGGTAAAAGAAACGATCGATACCTCGCTCGAAGCGGCGGCGGAATGCT TACCTTCTGTCACAGAAGAGCCGGTACACCGGCGGTGCAAGACTGTTGAT AGGAGGGGAGACCGAGAGTGTCATACGGAGGGTGTTAAAAACGCGATTGA AGAGCATTCCAAAAGGACGGAACAAGCAAAGCGACTGGCGCTGGAAGTTG CAAGGCTTCGATCCTCTTTACGTGGGAGCAACTATGACCTCGCGGTGGAA CGGAAAGCGCGTAGGCGGTTGGAGAACGACCACAGGGAAAAAGTGTTGGC GTGGGAAAACGAGCGCGAGGCCATCGTGTCCGCCAGGCATGACGCTGAAC GGGCGTTGCGAACAGCCCAAGAGGAGCTGAAAGAGATGCGGAAGCAGAAC GACCACAGGGAAAAAGTGTTGGCGTGGGAAAACGAGCGCGAGGCCATCGT GTCCGCCAGGCATGACGCTGAACGGGCGTTGCGAACAGCCCAAGAGGAGC TGAAAGAGATGCGGAAGCAGGACGAGGCTCGTTGTGCGAAGGCCAAATCC GAAGCCGCGATCGGCGAGGCTTCGCATCGCAAGGCGGCAAGCGCACTCAA CGGCGTGATTGAGGTCCAGGACCGGCTTGTGCGAGCGCTACGGACCGAAG TAGATCTAATCAAGAGAGCGAAAGTGGTGGCTCAGGACGAGGCTCGTTGT GCGAAGGCCAAATCCGAAGCCGCGATCGGCGAGGCTTCGCATCGCAAGGC GGCAAGCGCACTCAACGGCGTGATTGAGGTCCAGGACCGGCTTGTGCGAG CGCTACGGACCGAAGTAGATCTAATCAAGAGAGCGAAAGTGGTGGCTCAG GGCGATGCACGCGAGGCCGGCGAGAGACTAGGTCTCTTTGTCCAAGGCTT CCAAATGTGGCGAGATCGTGCCATGCTCCTGGAGGCTCGCATGGCAGAAC TGGATCACCCGCAACGTCAGCCGAACGACTACGTTGACCCGGGCCATTCG CAGAATAGACCGATTCAATCGGCCTTGTCTGGGCAAAATTATGTTTCAAT GGCCAAGCAGGCAAAAGGGGGCGAACGATCTCTGTCGATGGGTCGGATTG TAAAATGGAACGATGTCGAGTGTCCGGAAAGCAATCGCCTGGTCGAGCTT GACGGTGAACATGCTAGAGGAAGCGACGACCAAGACAGTAGCCTGGGAGG CGGGAAGTGCCAACGGGGCATGGAGGGGGGCAGACGCTGCAGTCTCCGCG ACGCGGTCGAGGCGCTCCAAGACAGCGACATGGTACGAAGGAGCGATCTT GCCGGCGATGCACGCGAGGCCGGCGAGAGACTAGGTCTCTTTGTCCAAGG CTTCCAAATGTGGCGAGATCGTGCCATGCTCCTGGAGGCTCGCATGGCAG AACTGGATCACCCGCAACGTCAGCCGAACGACTACGTTGACCCGGGCCAT TCGCAGAATAGACCGATTCAATCGGCCTTGTCTGGGCAAAATTATGTTTC AATGGCCAAGCAGGCAAAAGGGGGCGAACGATCTCTGTCGATGGGTCGGA TTGTAAAATGGAACGATGTCGAGTGTCCGGAAAGCAATCGCCTGGTCGAG CTTGACGGTGAACATGCTAGAGGAAGCGACGACCAAGACAGTAGCCTGGG AGGCGGGAAGTGCCAACGGGGCATGGAGGGGGGCAGACGCTGCAGTCTCC GCGACGCGGTCGAGGCGCTCCAAGACAGCGACATGGTACGAAGGAGCGAT CTTGCC back to top
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