mRNA_P-canaliculata_contig100923.174.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100923.174.1
Unique NamemRNA_P-canaliculata_contig100923.174.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig100923.174.1 vs. uniprot
Match: UPI00135A6769 (gamma-glutamyltransferase n=2 Tax=unclassified Psychromonas TaxID=2614957 RepID=UPI00135A6769)

HSP 1 Score: 311 bits (796), Expect = 1.070e-99
Identity = 158/225 (70.22%), Postives = 188/225 (83.56%), Query Frame = 1
Query:    4 MKKKLTKIFLATSITIVLTACSGGGSSDNDDVTVDCEIDQANPECASGFEEKEADIANEYIAVTNNPLATDAAYDVLKNGGNAIDAAIAAQMVLTLVEPQSSGIGGGAFMLYHDAETKEIFHFEGREAAPSAATGDMFFVDGVATS----FIERVIGGKSTGVPGVLKMLKMAHDELGTTAWEDLFDPAITLSEEGFEVSDRLATSIAGDSILCKGAVHPSGYYV 666
            MK+KL++IFLATS  ++L +C+    + + + +V+CEIDQANPECASGFEE+ A IAN+Y+AVTNNPLATDAAYDVLK+GGNAIDAAIAAQMVLTLVEPQSSGIGGG FMLY+DA+TK I HF+GRE APSAATGDMF+VDGVA S    F +RV+GGKSTGVPG LKMLK AHDE GT  W DLF PAI+L+EEGFEVS+RL  SI GD++ CK + + S +YV
Sbjct:    2 MKRKLSRIFLATSAVMMLASCNDSDET-SVEASVNCEIDQANPECASGFEERSAVIANDYMAVTNNPLATDAAYDVLKDGGNAIDAAIAAQMVLTLVEPQSSGIGGGGFMLYYDADTKNIVHFDGRETAPSAATGDMFYVDGVAPSGYNGFFQRVLGGKSTGVPGTLKMLKKAHDEYGTKVWSDLFTPAISLAEEGFEVSERLEASIEGDAVFCKDSDNTSDFYV 225          
BLAST of mRNA_P-canaliculata_contig100923.174.1 vs. uniprot
Match: A0A2M9TE98_9GAMM (Glutathione hydrolase proenzyme n=9 Tax=Halomonadaceae TaxID=28256 RepID=A0A2M9TE98_9GAMM)

HSP 1 Score: 192 bits (488), Expect = 2.250e-54
Identity = 101/181 (55.80%), Postives = 125/181 (69.06%), Query Frame = 1
Query:  121 QANPECASGFEEKEADIANEYIAVTNNPLATDAAYDVLKNGGNAIDAAIAAQMVLTLVEPQSSGIGGGAFMLYHDAETKEIFHFEGREAAPSAATGDMFFVDGVATSFIERVIGGKSTGVPGVLKMLKMAHDELGTTAWEDLFDPAITLSEEGFEVSDRLATSIAGDSILCKGAVHPSGYY 663
            + +PE  SG+EEK       +     NPLATDA Y VLK GGNAIDAA+A QMVLTLVEPQSSGIGGGAF++++D    + F  +GRE APSAATG++F  DG    F++ V  G S GVPGVL+ML+ AH E G  AW +LF PAITL+EEGF VS RL TS+A D+ L +  +  + YY
Sbjct:   28 EMSPEVGSGYEEKPGWAVESFAVAAANPLATDAGYQVLKAGGNAIDAAVAVQMVLTLVEPQSSGIGGGAFLMHYDGSNVQAF--DGRETAPSAATGELFMEDGEPLPFMDAVASGLSVGVPGVLRMLEQAHAEHGQLAWRELFTPAITLAEEGFAVSHRLHTSLANDTALREDPLARAFYY 206          
BLAST of mRNA_P-canaliculata_contig100923.174.1 vs. uniprot
Match: A0A4U3C9X6_9GAMM (Glutathione hydrolase proenzyme n=21 Tax=Halomonadaceae TaxID=28256 RepID=A0A4U3C9X6_9GAMM)

HSP 1 Score: 191 bits (484), Expect = 8.570e-54
Identity = 100/178 (56.18%), Postives = 123/178 (69.10%), Query Frame = 1
Query:  130 PECASGFEEKEADIANEYIAVTNNPLATDAAYDVLKNGGNAIDAAIAAQMVLTLVEPQSSGIGGGAFMLYHDAETKEIFHFEGREAAPSAATGDMFFVDGVATSFIERVIGGKSTGVPGVLKMLKMAHDELGTTAWEDLFDPAITLSEEGFEVSDRLATSIAGDSILCKGAVHPSGYY 663
            PE  SGFEEK    A+ +     NPLATDA Y VLK GGNAIDAA+A QMVLTLVEPQSSGIGGGAF+++ D    ++  ++GRE AP+A TG++F  DG    F+E V  G S GVPG L+ML+ AH E G  AW++LF PAITL+EEGF VS RL TS+A D  L +  +  + YY
Sbjct:   31 PEVGSGFEEKPGWAADSFAVAAANPLATDAGYQVLKAGGNAIDAAVAVQMVLTLVEPQSSGIGGGAFLMHFDGA--DVQAYDGRETAPAAVTGELFMEDGEPLPFMEAVASGLSVGVPGTLRMLEQAHAEHGQLAWQELFTPAITLAEEGFAVSQRLHTSLANDEYLRENDLAQAFYY 206          
BLAST of mRNA_P-canaliculata_contig100923.174.1 vs. uniprot
Match: A0A2A3XG14_9GAMM (Glutathione hydrolase proenzyme n=2 Tax=Halomonas TaxID=2745 RepID=A0A2A3XG14_9GAMM)

HSP 1 Score: 190 bits (482), Expect = 1.700e-53
Identity = 100/184 (54.35%), Postives = 125/184 (67.93%), Query Frame = 1
Query:  112 EIDQANPECASGFEEKEADIANEYIAVTNNPLATDAAYDVLKNGGNAIDAAIAAQMVLTLVEPQSSGIGGGAFMLYHDAETKEIFHFEGREAAPSAATGDMFFVDGVATSFIERVIGGKSTGVPGVLKMLKMAHDELGTTAWEDLFDPAITLSEEGFEVSDRLATSIAGDSILCKGAVHPSGYY 663
            E    +PE  SG+EEK    A+ +     NPLATDA Y +LK GGNAIDAAIA QMVL LVEPQSSGIGGGAF++Y+D    +I  ++GRE AP   TG++F  DG   +F++ V  G S GVPG L+ML+ AH E G  AWE+LF PAITL+EEGF VS+RL T++A D  L + A+    YY
Sbjct:   26 EAPSISPEVESGYEEKPGWSADSFAVAAANPLATDAGYQILKAGGNAIDAAIAVQMVLNLVEPQSSGIGGGAFLMYYDGA--DIRAYDGRETAPQGVTGELFMEDGEPIAFMDAVASGLSVGVPGTLRMLEKAHAEHGELAWEELFKPAITLAEEGFAVSNRLHTTLASDEYLRQDALASQFYY 207          
BLAST of mRNA_P-canaliculata_contig100923.174.1 vs. uniprot
Match: A0A1U9R989_9GAMM (Glutathione hydrolase proenzyme n=2 Tax=Halomonas TaxID=2745 RepID=A0A1U9R989_9GAMM)

HSP 1 Score: 189 bits (480), Expect = 3.590e-53
Identity = 99/178 (55.62%), Postives = 123/178 (69.10%), Query Frame = 1
Query:  130 PECASGFEEKEADIANEYIAVTNNPLATDAAYDVLKNGGNAIDAAIAAQMVLTLVEPQSSGIGGGAFMLYHDAETKEIFHFEGREAAPSAATGDMFFVDGVATSFIERVIGGKSTGVPGVLKMLKMAHDELGTTAWEDLFDPAITLSEEGFEVSDRLATSIAGDSILCKGAVHPSGYY 663
            PE  SG+EEK    A+ +     NPLATDA Y VLK GGNAIDAA+A QMVLTLVEPQSSGIGGGAF++++D    + +  +GRE AP+AATG++F  DG   +F++ V  G S GVPG LKML+ AH E G  +WE LF+PAI L+EEGF VS RL TS+A D  L    +  + YY
Sbjct:   37 PEVGSGYEEKPGWAASSFAVAAANPLATDAGYQVLKAGGNAIDAAVAVQMVLTLVEPQSSGIGGGAFLMHYDGSNVQAY--DGRETAPAAATGELFLEDGEPLAFMDAVASGLSVGVPGTLKMLEKAHAEHGQLSWEVLFEPAIVLAEEGFAVSQRLHTSLANDEALRHDPLASAFYY 212          
BLAST of mRNA_P-canaliculata_contig100923.174.1 vs. uniprot
Match: A0A3D4KMH0_HALSX (Glutathione hydrolase proenzyme n=5 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A3D4KMH0_HALSX)

HSP 1 Score: 188 bits (477), Expect = 9.050e-53
Identity = 107/214 (50.00%), Postives = 133/214 (62.15%), Query Frame = 1
Query:   22 KIFLATSITIVLTACSGGGSSDNDDVTVDCEIDQANPECASGFEEKEADIANEYIAVTNNPLATDAAYDVLKNGGNAIDAAIAAQMVLTLVEPQSSGIGGGAFMLYHDAETKEIFHFEGREAAPSAATGDMFFVDGVATSFIERVIGGKSTGVPGVLKMLKMAHDELGTTAWEDLFDPAITLSEEGFEVSDRLATSIAGDSILCKGAVHPSGYY 663
            +I LA S  +++   S G S +   +T         PE  SG+EEK    A  +     NPLATDA Y VL NGGNAIDAAIA QMVLTLVEPQSSGIGGGAF++++D    + +  +GRE AP A TG++F  +G    F + V  G S GVPG ++ML+ AH E G  AWE LF+PAITL+EEGF VS RL TS+A D  L    +  S YY
Sbjct:    5 RIKLALSGLLLVPVYSFGFSYETPSIT---------PEVGSGYEEKPGWEAESFAVAAANPLATDAGYQVLANGGNAIDAAIAVQMVLTLVEPQSSGIGGGAFLMFYDGSNVQAY--DGRETAPGAVTGELFMENGEPLPFADAVASGLSVGVPGTVRMLEQAHKEHGQLAWEALFEPAITLAEEGFAVSQRLHTSLANDEALRSDPLAESFYY 207          
BLAST of mRNA_P-canaliculata_contig100923.174.1 vs. uniprot
Match: A0A433KT28_9GAMM (Glutathione hydrolase proenzyme n=3 Tax=Halomonas TaxID=2745 RepID=A0A433KT28_9GAMM)

HSP 1 Score: 186 bits (473), Expect = 3.390e-52
Identity = 98/184 (53.26%), Postives = 126/184 (68.48%), Query Frame = 1
Query:  112 EIDQANPECASGFEEKEADIANEYIAVTNNPLATDAAYDVLKNGGNAIDAAIAAQMVLTLVEPQSSGIGGGAFMLYHDAETKEIFHFEGREAAPSAATGDMFFVDGVATSFIERVIGGKSTGVPGVLKMLKMAHDELGTTAWEDLFDPAITLSEEGFEVSDRLATSIAGDSILCKGAVHPSGYY 663
            E+    PE  SGFEEK    A+ +     NPLATDA Y VLK GGNAIDAA+A QMVL LVEPQSSGIGGGAF++++D   +++  ++GRE AP+AATG++F  +G    F + V  G S GVPG ++ML+MAH E G  +W+ L  PAITL+EEGF VS RL TS+A D+ L + A+    YY
Sbjct:   25 EVPSITPEVGSGFEEKPGWEASTFAVAAANPLATDAGYQVLKAGGNAIDAAVAVQMVLALVEPQSSGIGGGAFLMHYDG--RDVQAYDGRETAPAAATGELFTENGEPLDFADAVASGLSVGVPGTVRMLEMAHAEHGLLSWKSLLMPAITLAEEGFAVSQRLHTSLANDTALRENALASDFYY 206          
BLAST of mRNA_P-canaliculata_contig100923.174.1 vs. uniprot
Match: UPI00178893EB (gamma-glutamyltransferase n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=UPI00178893EB)

HSP 1 Score: 186 bits (473), Expect = 3.440e-52
Identity = 98/184 (53.26%), Postives = 121/184 (65.76%), Query Frame = 1
Query:  112 EIDQANPECASGFEEKEADIANEYIAVTNNPLATDAAYDVLKNGGNAIDAAIAAQMVLTLVEPQSSGIGGGAFMLYHDAETKEIFHFEGREAAPSAATGDMFFVDGVATSFIERVIGGKSTGVPGVLKMLKMAHDELGTTAWEDLFDPAITLSEEGFEVSDRLATSIAGDSILCKGAVHPSGYY 663
            E     PE  SG+EEK    A  +     NPLATDA Y VL NGGNA+DAAIA QMVLTLVEPQSSGIGGGAF++++D    ++  ++GRE AP+A TG++F  DG    F++ V  G S GVPG ++ML+ AH E G  AWE+LF PAITL+EEGF VS RL TS+  D  L    +    YY
Sbjct:   26 ETPSVTPEVGSGYEEKPGWSAASFAVAAANPLATDAGYQVLANGGNAVDAAIAVQMVLTLVEPQSSGIGGGAFLMHYDGS--DVQAYDGRETAPAAVTGELFMQDGEPLPFMDAVASGLSVGVPGTVRMLEQAHKEHGQLAWEELFVPAITLAEEGFAVSQRLHTSLTSDEALKNDPLAGQFYY 207          
BLAST of mRNA_P-canaliculata_contig100923.174.1 vs. uniprot
Match: A0A7C9NRZ7_9GAMM (Glutathione hydrolase proenzyme n=2 Tax=Halomonas TaxID=2745 RepID=A0A7C9NRZ7_9GAMM)

HSP 1 Score: 186 bits (472), Expect = 4.730e-52
Identity = 105/216 (48.61%), Postives = 139/216 (64.35%), Query Frame = 1
Query:   16 LTKIFLATSITIVLTACSGGGSSDNDDVTVDCEIDQANPECASGFEEKEADIANEYIAVTNNPLATDAAYDVLKNGGNAIDAAIAAQMVLTLVEPQSSGIGGGAFMLYHDAETKEIFHFEGREAAPSAATGDMFFVDGVATSFIERVIGGKSTGVPGVLKMLKMAHDELGTTAWEDLFDPAITLSEEGFEVSDRLATSIAGDSILCKGAVHPSGYY 663
            L K FL+ +  +++   S G S +   VT         PE  SGFEEK    A+ +     NPLATDA Y VLK GGNAIDAA+A QMVLTLVEPQSSGIGGGAF++++D    ++  ++GRE AP AA+G++F  +G   +F++ V  G S GVPG L+ML+M H E G   W+DLF PAITL+E+GF VS RL TS+A ++ L +  +    YY
Sbjct:    2 LPKRFLSLTGLMLVPLYSWGFSYEAPSVT---------PEVGSGFEEKPGWAASSFAVAAANPLATDAGYQVLKAGGNAIDAAVAVQMVLTLVEPQSSGIGGGAFLMHYDGT--DVQAYDGRETAPQAASGELFIENGEPLAFMDAVASGLSVGVPGTLRMLEMVHAEHGQLPWKDLFTPAITLAEQGFSVSQRLHTSLASETALREDELASVFYY 206          
BLAST of mRNA_P-canaliculata_contig100923.174.1 vs. uniprot
Match: UPI001CC72F8F (gamma-glutamyltransferase n=1 Tax=Halomonas aquamarina TaxID=77097 RepID=UPI001CC72F8F)

HSP 1 Score: 186 bits (472), Expect = 4.810e-52
Identity = 97/184 (52.72%), Postives = 121/184 (65.76%), Query Frame = 1
Query:  112 EIDQANPECASGFEEKEADIANEYIAVTNNPLATDAAYDVLKNGGNAIDAAIAAQMVLTLVEPQSSGIGGGAFMLYHDAETKEIFHFEGREAAPSAATGDMFFVDGVATSFIERVIGGKSTGVPGVLKMLKMAHDELGTTAWEDLFDPAITLSEEGFEVSDRLATSIAGDSILCKGAVHPSGYY 663
            E     PE  SG+EEK       +     NPLATDA Y VLK GGNA+DAAIA QMVLTLVEPQSSGIGGGAF+L++D    ++  ++GRE AP+ ATG++F  DG   +F+E V  G S GVPG ++ML+ AH E G   W +LF PAITL+EEGFE+S RL TS+A D  L    +    Y+
Sbjct:   26 EAPSVTPEVGSGYEEKPGWATESFAVAAANPLATDAGYQVLKAGGNAVDAAIAVQMVLTLVEPQSSGIGGGAFLLHYDGA--DVQAYDGRETAPAGATGELFMEDGEPLTFMEAVASGLSVGVPGTVRMLEQAHREHGKLDWSELFVPAITLAEEGFEISQRLHTSLASDQALASDPLAGKFYF 207          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100923.174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00135A67691.070e-9970.22gamma-glutamyltransferase n=2 Tax=unclassified Psy... [more]
A0A2M9TE98_9GAMM2.250e-5455.80Glutathione hydrolase proenzyme n=9 Tax=Halomonada... [more]
A0A4U3C9X6_9GAMM8.570e-5456.18Glutathione hydrolase proenzyme n=21 Tax=Halomonad... [more]
A0A2A3XG14_9GAMM1.700e-5354.35Glutathione hydrolase proenzyme n=2 Tax=Halomonas ... [more]
A0A1U9R989_9GAMM3.590e-5355.62Glutathione hydrolase proenzyme n=2 Tax=Halomonas ... [more]
A0A3D4KMH0_HALSX9.050e-5350.00Glutathione hydrolase proenzyme n=5 Tax=unclassifi... [more]
A0A433KT28_9GAMM3.390e-5253.26Glutathione hydrolase proenzyme n=3 Tax=Halomonas ... [more]
UPI00178893EB3.440e-5253.26gamma-glutamyltransferase n=2 Tax=unclassified Hal... [more]
A0A7C9NRZ7_9GAMM4.730e-5248.61Glutathione hydrolase proenzyme n=2 Tax=Halomonas ... [more]
UPI001CC72F8F4.810e-5252.72gamma-glutamyltransferase n=1 Tax=Halomonas aquama... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100923contigP-canaliculata_contig100923:354..1019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score196.1
Seed ortholog evalue1.8e-47
Seed eggNOG ortholog1380358.JADJ01000011_gene274
Preferred nameggt
KEGG rclassRC00064,RC00090,RC00096
KEGG koko:K00681
KEGG ReactionR00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935
KEGG Pathwayko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006082,GO:0006508,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016787,GO:0019538,GO:0019752,GO:0030288,GO:0030313,GO:0031975,GO:0034722,GO:0036374,GO:0042597,GO:0043094,GO:0043102,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0070011,GO:0071704,GO:0097264,GO:0140096,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.gamma-glutamyltransferase
EggNOG OGs1MUV6@1224,1RMIT@1236,1XIJT@135619,COG0405@1,COG0405@2
EC2.3.2.2,3.4.19.13
COG Functional cat.M
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categorysignal peptide
Exons1
Model size666
Cds size663
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.9593563-UTR-P-canaliculata_contig100923:353..3561622815582.9593563-UTR-P-canaliculata_contig100923:353..356Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100923 354..356 +
1693494150.0923035-UTR-P-canaliculata_contig100923:353..3561693494150.0923035-UTR-P-canaliculata_contig100923:353..356Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100923 354..356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.9724247-CDS-P-canaliculata_contig100923:356..10191622815582.9724247-CDS-P-canaliculata_contig100923:356..1019Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100923 357..1019 +
1693494150.1047306-CDS-P-canaliculata_contig100923:356..10191693494150.1047306-CDS-P-canaliculata_contig100923:356..1019Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100923 357..1019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100923.174.1prot_P-canaliculata_contig100923.174.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100923 357..1019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100923.174.1

>prot_P-canaliculata_contig100923.174.1 ID=prot_P-canaliculata_contig100923.174.1|Name=mRNA_P-canaliculata_contig100923.174.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=221bp
MKKKLTKIFLATSITIVLTACSGGGSSDNDDVTVDCEIDQANPECASGFE
EKEADIANEYIAVTNNPLATDAAYDVLKNGGNAIDAAIAAQMVLTLVEPQ
SSGIGGGAFMLYHDAETKEIFHFEGREAAPSAATGDMFFVDGVATSFIER
VIGGKSTGVPGVLKMLKMAHDELGTTAWEDLFDPAITLSEEGFEVSDRLA
TSIAGDSILCKGAVHPSGYYV
back to top

mRNA from alignment at P-canaliculata_contig100923:354..1019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100923.174.1 ID=mRNA_P-canaliculata_contig100923.174.1|Name=mRNA_P-canaliculata_contig100923.174.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=666bp|location=Sequence derived from alignment at P-canaliculata_contig100923:354..1019+ (Pelvetia canaliculata dioecious)
ATAATGAAAAAAAAATTAACAAAAATATTTTTAGCGACCTCTATCACAAT CGTCTTAACCGCCTGTAGTGGAGGCGGTAGCAGTGATAACGATGATGTGA CTGTAGATTGCGAAATTGACCAAGCCAACCCAGAATGTGCTTCAGGGTTT GAAGAAAAAGAAGCCGATATTGCTAATGAATATATCGCAGTCACGAATAA CCCATTAGCGACTGATGCTGCTTATGATGTGCTTAAAAATGGTGGTAATG CGATTGATGCAGCCATTGCTGCTCAAATGGTATTAACGCTTGTTGAACCT CAGTCATCAGGTATTGGCGGTGGTGCTTTCATGCTTTATCATGATGCAGA AACCAAAGAAATTTTTCACTTTGAAGGGCGTGAAGCAGCCCCTTCTGCAG CCACGGGTGACATGTTTTTTGTTGATGGCGTTGCCACTAGCTTTATTGAA CGTGTAATTGGCGGGAAATCAACAGGCGTTCCGGGTGTGTTAAAGATGCT AAAAATGGCACACGATGAATTAGGAACTACAGCATGGGAAGATCTGTTTG ACCCAGCCATAACATTATCAGAAGAAGGTTTCGAAGTCTCTGATCGCTTA GCCACATCAATCGCAGGAGACTCTATTTTATGTAAAGGTGCAGTTCATCC CTCTGGTTATTATGTA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig100923:354..1019+

>mRNA_P-canaliculata_contig100923.174.1 ID=mRNA_P-canaliculata_contig100923.174.1|Name=mRNA_P-canaliculata_contig100923.174.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1326bp|location=Sequence derived from alignment at P-canaliculata_contig100923:354..1019+ (Pelvetia canaliculata dioecious)
ATGAAAAAAAAATTAACAAAAATATTTTTAGCGACCTCTATCACAATCGT
CTTAACCGCCTGTAGTGGAGGCGGTAGCAGTGATAACGATGATGTGACTG
TAGATTGCGAAATTGACCAAGCCAACCCAGAATGTGCTTCAGGGTTTGAA
GAAAAAGAAGCCGATATTGCTAATGAATATATCGCAGTCACGAATAACCC
ATTAGCGACTGATGCTGCTTATGATGTGCTTAAAAATGGTGGTAATGCGA
TTGATGCAGCCATTGCTGCTCAAATGGTATTAACGCTTGTTGAACCTCAG
TCATCAGGTATTGGCGGTGGTGCTTTCATGCTTTATCATGATGCAGAAAC
CAAAGAAATTTTTCACTTTGAAGGGCGTGAAGCAGCCCCTTCTGCAGCCA
CGGGTGACATGTTTTTTGTTGATGGCGTTGCCACTAGCTTTATTGAACGT
GTAATTGGCGGGAAATCAACAGGCGTTCCGGGTGTGTTAAAGATGCTAAA
AATGGCACACGATGAATTAGGAACTACAGCATGGGAAGATCTGTTTGACC
CAGCCATAACATTATCAGAAGAAGGTTTCGAAGTCTCTGATCGCTTAGCC
ACATCAATCGCAGGAGACTCTATTTTATGTAAAGGTGCAGTTCATCCCTC
TGGTTATTATGTAATGAAAAAAAAATTAACAAAAATATTTTTAGCGACCT
CTATCACAATCGTCTTAACCGCCTGTAGTGGAGGCGGTAGCAGTGATAAC
GATGATGTGACTGTAGATTGCGAAATTGACCAAGCCAACCCAGAATGTGC
TTCAGGGTTTGAAGAAAAAGAAGCCGATATTGCTAATGAATATATCGCAG
TCACGAATAACCCATTAGCGACTGATGCTGCTTATGATGTGCTTAAAAAT
GGTGGTAATGCGATTGATGCAGCCATTGCTGCTCAAATGGTATTAACGCT
TGTTGAACCTCAGTCATCAGGTATTGGCGGTGGTGCTTTCATGCTTTATC
ATGATGCAGAAACCAAAGAAATTTTTCACTTTGAAGGGCGTGAAGCAGCC
CCTTCTGCAGCCACGGGTGACATGTTTTTTGTTGATGGCGTTGCCACTAG
CTTTATTGAACGTGTAATTGGCGGGAAATCAACAGGCGTTCCGGGTGTGT
TAAAGATGCTAAAAATGGCACACGATGAATTAGGAACTACAGCATGGGAA
GATCTGTTTGACCCAGCCATAACATTATCAGAAGAAGGTTTCGAAGTCTC
TGATCGCTTAGCCACATCAATCGCAGGAGACTCTATTTTATGTAAAGGTG
CAGTTCATCCCTCTGGTTATTATGTA
back to top