mRNA_P-canaliculata_contig100904.171.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100904.171.1
Unique NamemRNA_P-canaliculata_contig100904.171.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig100904.171.1 vs. uniprot
Match: A0A2E8K2I6_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8K2I6_9PLAN)

HSP 1 Score: 72.0 bits (175), Expect = 2.850e-10
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:  286 VAWHLGDAIEDALHGAVWLAALSAGAAWLHLGVLAPARQWAAAVLLGVTALWALDAAQQVWIEYPQNVAFFAEHQTELLTSRGIEPGSGMAELFARRLTFNDATGPVGFSNVFASLAGAAGV 651
            V  H  + + D   GA WLAA+  G A  HL   +  R+   +++LG  A+  +    QV+ E+   VAFF  ++  +L SRG   GS  A  F RRL   +ATG +GFSNVF+ L+GAA V
Sbjct:   94 VVLHGTEGLLDGWRGADWLAAVMLGVALAHLVRKSVNRRIVISIMLGAIAVSGVRGFHQVFWEHADTVAFFESNRELVLGSRGWAEGSPAALAFERRLRQPEATGWIGFSNVFSGLSGAAAV 215
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BLAST of mRNA_P-canaliculata_contig100904.171.1 vs. uniprot
Match: A0A2E3Q617_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E3Q617_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 3.820e-10
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 1 
Query:  295 HLGDAIEDALHGAVWLAALSAGAAWLHLGVLAPARQWAAAVLLGVTALWALDAAQQVWIEYPQNVAFFAEHQTELLTSRGIEPGSGMAELFARRLTFNDATGPVGFSNVFASLAGAAGV 651
            H    + D   G+ W AA+  GAA  HL  L   R+   ++LL   A+  +    QV+ E+   VA+F  ++ ++L SRG   GS  A  F RRL   +ATG +GFSNVF+ L+GAA V
Sbjct:   97 HGAGDLLDGWRGSDWFAAVVLGAALAHLVRLPGNRRMVLSILLAAVAVGGVRGFHQVFWEHADTVAYFEANRDQVLASRGWAEGSPAALAFERRLRQPEATGWIGFSNVFSGLSGAAAV 215
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BLAST of mRNA_P-canaliculata_contig100904.171.1 vs. uniprot
Match: A0A3L7TI01_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7TI01_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 4.100e-8
Identity = 84/253 (33.20%), Postives = 116/253 (45.85%), Query Frame = 1 
Query:   64 LVPLISQVAFDVDPRMALTLNAATDGATGLTAAALVWWAAGLTAVSAGGLAVA--LLAGVRLRIGLLLLAAAGAAGVAWHLGDAIEDALHGAVWLAALSAGAAWLHLGVLAPARQWAAAVLLGVTALWALDAAQQVWIEYPQNVAFFAEHQTELLTSRGIEPGSGMAELFARRLTFNDATGPVGFSNVFASLAGAAG-VLAAVXXAAWLRQRRGAAAXXXXXXXXXXXLVVTLTHSKGAPGALAVTAAAALAL 813
            L+P+  Q+ FDVDP     L+A    A G T + ++     +  + A  LA+A    AG+ +   ++LLA A    +A+   ++I DA  G  WLAA  A  A  HL      R  A A+++ +TA +AL    QV  E+   VA F E +      RG    S  A  + RRL   +ATG  GFSNVF++  G    VL A    +W R +                L+V      G  GAL  TA AAL L
Sbjct:   28 LLPIQPQLWFDVDPA----LDAMPMLAMGPTGSHVL----DVLLILAATLAIAGEHRAGLGVHWSMVLLALAPLPALAYWGQNSI-DAFRGDTWLAAALAFVALAHLVRERSLRVMAIAIVVALTAAFALRGIVQVTTEHDATVALFRETRATFFAERGWSADSSAARTYERRLMQAEATGWFGFSNVFSTFMGVGALVLGATAVMSWRRVKSTLTMSLTIAALACAALLVI----NGGKGALGATALAALLL 267
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BLAST of mRNA_P-canaliculata_contig100904.171.1 vs. uniprot
Match: A0A424KKF0_9BACT (O-antigen ligase domain-containing protein n=1 Tax=Phycisphaera sp. TMED9 TaxID=1986611 RepID=A0A424KKF0_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 4.180e-7
Identity = 52/150 (34.67%), Postives = 73/150 (48.67%), Query Frame = 1 
Query:  337 WLAALSAGAAWLHLGVLAPARQWAAAVLLGVTALWALDAAQQVWIEYPQNVAFFAEHQTELLTSRGIEPGSGMAELFARRLTFNDATGPVGFSNVFASLAGAAGVLAAVXXAAWLRQRRGAAAXXXXXXXXXXXLVVTLTHSKGAPGALA 786
            W AA + G A  HL      R    A+LLG   + A     QV +E+   VAFF  ++ ++L +RG    S  A  F RRL   +ATG +GFSN+F+  A AAG +  V  A  + +RRG  A           ++  L    G+ GA+A
Sbjct:  125 WFAAATTGVALAHLVADRRVRVVVLAMLLGGIVVMACRGVHQVVVEHADTVAFFDANRADILATRGWLEESPAALAFERRLRQPEATGWIGFSNIFSGFA-AAGCIGLVG-ALVVSRRRGHEAGGPVLLGLAAVMLAVLVGVNGSKGAIA 272
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100904.171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E8K2I6_9PLAN2.850e-1040.16Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A2E3Q617_9BACT3.820e-1039.50Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A3L7TI01_9BACT4.100e-833.20Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A424KKF0_9BACT4.180e-734.67O-antigen ligase domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100904contigP-canaliculata_contig100904:64..1008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size945
Cds size945
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.8025658-CDS-P-canaliculata_contig100904:63..10081622815582.8025658-CDS-P-canaliculata_contig100904:63..1008Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100904 64..1008 +
1693494150.0348604-CDS-P-canaliculata_contig100904:63..10081693494150.0348604-CDS-P-canaliculata_contig100904:63..1008Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100904 64..1008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100904.171.1prot_P-canaliculata_contig100904.171.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100904 64..1008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100904.171.1

>prot_P-canaliculata_contig100904.171.1 ID=prot_P-canaliculata_contig100904.171.1|Name=mRNA_P-canaliculata_contig100904.171.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=315bp
WAPALVPYLAAALMALTLVPCLVPLISQVAFDVDPRMALTLNAATDGATG
LTAAALVWWAAGLTAVSAGGLAVALLAGVRLRIGLLLLAAAGAAGVAWHL
GDAIEDALHGAVWLAALSAGAAWLHLGVLAPARQWAAAVLLGVTALWALD
AAQQVWIEYPQNVAFFAEHQTELLTSRGIEPGSGMAELFARRLTFNDATG
PVGFSNVFASLAGAAGVLAAVAGAAWLRQRRGAAAGAAALSALAAVLVVT
LTHSKGAPGALAVTAAAALALGAARRWGGRAAPALARAAGPLAVIAVLIV
IALRLAAGAPPPPAG
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mRNA from alignment at P-canaliculata_contig100904:64..1008+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100904.171.1 ID=mRNA_P-canaliculata_contig100904.171.1|Name=mRNA_P-canaliculata_contig100904.171.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=945bp|location=Sequence derived from alignment at P-canaliculata_contig100904:64..1008+ (Pelvetia canaliculata dioecious)
TGGGCTCCGGCCCTCGTGCCCTACCTGGCCGCGGCCCTGATGGCCCTGAC
CCTGGTGCCGTGTCTGGTGCCGCTGATTTCGCAGGTCGCCTTCGACGTCG
ATCCGCGGATGGCCCTGACCCTGAATGCCGCCACCGACGGGGCCACGGGT
CTGACCGCCGCCGCGTTGGTCTGGTGGGCGGCGGGTCTCACCGCGGTGTC
GGCCGGCGGACTCGCGGTGGCCCTGCTGGCGGGCGTACGCCTGCGCATCG
GGTTACTGCTGCTGGCCGCGGCCGGCGCCGCGGGGGTGGCGTGGCACCTG
GGTGACGCCATCGAAGACGCCCTGCACGGCGCCGTGTGGCTGGCCGCGCT
GTCGGCCGGGGCGGCGTGGCTGCACCTCGGGGTGTTAGCGCCGGCGCGGC
AGTGGGCGGCCGCGGTGCTGCTGGGGGTCACCGCGCTGTGGGCCCTGGAC
GCCGCGCAGCAGGTGTGGATCGAGTACCCGCAGAACGTCGCCTTCTTCGC
CGAGCACCAGACCGAACTGCTGACGTCCCGGGGGATCGAGCCCGGCTCGG
GCATGGCCGAACTTTTCGCGCGGCGGCTCACCTTCAACGACGCCACGGGA
CCGGTGGGCTTCTCCAACGTGTTCGCCTCGCTGGCCGGGGCGGCGGGGGT
GCTGGCCGCGGTGGCGGGCGCAGCGTGGTTACGCCAGCGTCGCGGGGCGG
CGGCGGGCGCCGCCGCCCTGAGTGCTCTCGCCGCCGTTCTGGTGGTCACG
CTGACCCACTCCAAGGGCGCCCCCGGGGCGCTGGCCGTGACCGCGGCGGC
GGCGCTGGCCCTGGGGGCAGCGCGGCGGTGGGGCGGTCGCGCCGCGCCGG
CCCTGGCCCGCGCCGCCGGTCCGCTGGCCGTAATTGCGGTGCTGATCGTA
ATTGCGCTGCGGCTGGCGGCGGGCGCCCCGCCGCCGCCAGCCGGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig100904:64..1008+

>mRNA_P-canaliculata_contig100904.171.1 ID=mRNA_P-canaliculata_contig100904.171.1|Name=mRNA_P-canaliculata_contig100904.171.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1890bp|location=Sequence derived from alignment at P-canaliculata_contig100904:64..1008+ (Pelvetia canaliculata dioecious)
TGGGCTCCGGCCCTCGTGCCCTACCTGGCCGCGGCCCTGATGGCCCTGAC
CCTGGTGCCGTGTCTGGTGCCGCTGATTTCGCAGGTCGCCTTCGACGTCG
ATCCGCGGATGGCCCTGACCCTGAATGCCGCCACCGACGGGGCCACGGGT
CTGACCGCCGCCGCGTTGGTCTGGTGGGCGGCGGGTCTCACCGCGGTGTC
GGCCGGCGGACTCGCGGTGGCCCTGCTGGCGGGCGTACGCCTGCGCATCG
GGTTACTGCTGCTGGCCGCGGCCGGCGCCGCGGGGGTGGCGTGGCACCTG
GGTGACGCCATCGAAGACGCCCTGCACGGCGCCGTGTGGCTGGCCGCGCT
GTCGGCCGGGGCGGCGTGGCTGCACCTCGGGGTGTTAGCGCCGGCGCGGC
AGTGGGCGGCCGCGGTGCTGCTGGGGGTCACCGCGCTGTGGGCCCTGGAC
GCCGCGCAGCAGGTGTGGATCGAGTACCCGCAGAACGTCGCCTTCTTCGC
CGAGCACCAGACCGAACTGCTGACGTCCCGGGGGATCGAGCCCGGCTCGG
GCATGGCCGAACTTTTCGCGCGGCGGCTCACCTTCAACGACGCCACGGGA
CCGGTGGGCTTCTCCAACGTGTTCGCCTCGCTGGCCGGGGCGGCGGGGGT
GCTGGCCGCGGTGGCGGGCGCAGCGTGGTTACGCCAGCGTCGCGGGGCGG
CGGCGGGCGCCGCCGCCCTGAGTGCTCTCGCCGCCGTTCTGGTGGTCACG
CTGACCCACTCCAAGGGCGCCCCCGGGGCGCTGGCCGTGACCGCGGCGGC
GGCGCTGGCCCTGGGGGCAGCGCGGCGGTGGGGCGGTCGCGCCGCGCCGG
CCCTGGCCCGCGCCGCCGGTCCGCTGGCCGTAATTGCGGTGCTGATCGTA
ATTGCGCTGCGGCTGGCGGCGGGCGCCCCGCCGCCGCCAGCCGGCTGGGC
TCCGGCCCTCGTGCCCTACCTGGCCGCGGCCCTGATGGCCCTGACCCTGG
TGCCGTGTCTGGTGCCGCTGATTTCGCAGGTCGCCTTCGACGTCGATCCG
CGGATGGCCCTGACCCTGAATGCCGCCACCGACGGGGCCACGGGTCTGAC
CGCCGCCGCGTTGGTCTGGTGGGCGGCGGGTCTCACCGCGGTGTCGGCCG
GCGGACTCGCGGTGGCCCTGCTGGCGGGCGTACGCCTGCGCATCGGGTTA
CTGCTGCTGGCCGCGGCCGGCGCCGCGGGGGTGGCGTGGCACCTGGGTGA
CGCCATCGAAGACGCCCTGCACGGCGCCGTGTGGCTGGCCGCGCTGTCGG
CCGGGGCGGCGTGGCTGCACCTCGGGGTGTTAGCGCCGGCGCGGCAGTGG
GCGGCCGCGGTGCTGCTGGGGGTCACCGCGCTGTGGGCCCTGGACGCCGC
GCAGCAGGTGTGGATCGAGTACCCGCAGAACGTCGCCTTCTTCGCCGAGC
ACCAGACCGAACTGCTGACGTCCCGGGGGATCGAGCCCGGCTCGGGCATG
GCCGAACTTTTCGCGCGGCGGCTCACCTTCAACGACGCCACGGGACCGGT
GGGCTTCTCCAACGTGTTCGCCTCGCTGGCCGGGGCGGCGGGGGTGCTGG
CCGCGGTGGCGGGCGCAGCGTGGTTACGCCAGCGTCGCGGGGCGGCGGCG
GGCGCCGCCGCCCTGAGTGCTCTCGCCGCCGTTCTGGTGGTCACGCTGAC
CCACTCCAAGGGCGCCCCCGGGGCGCTGGCCGTGACCGCGGCGGCGGCGC
TGGCCCTGGGGGCAGCGCGGCGGTGGGGCGGTCGCGCCGCGCCGGCCCTG
GCCCGCGCCGCCGGTCCGCTGGCCGTAATTGCGGTGCTGATCGTAATTGC
GCTGCGGCTGGCGGCGGGCGCCCCGCCGCCGCCAGCCGGC
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