mRNA_P-canaliculata_contig100901.170.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100901.170.1
Unique NamemRNA_P-canaliculata_contig100901.170.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig100901.170.1 vs. uniprot
Match: A6VRX4_MARMS (Uncharacterized protein n=6 Tax=Marinomonas TaxID=28253 RepID=A6VRX4_MARMS)

HSP 1 Score: 61.6 bits (148), Expect = 5.910e-10
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 MKLLPARPSLEYLYREARAIKSRHRRADTSVCSVIGHFDTSLHGLSPE 144
            MK+LP  PS+EYL+R ARA++S+HR  D SV  +I HFDTS   L  E
Sbjct:    1 MKILPNNPSIEYLHRAARALRSKHRAGDPSVVELISHFDTSFQNLQTE 48
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100901.170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A6VRX4_MARMS5.910e-1056.25Uncharacterized protein n=6 Tax=Marinomonas TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100901contigP-canaliculata_contig100901:874..1017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.7659917-CDS-P-canaliculata_contig100901:873..10171622815582.7659917-CDS-P-canaliculata_contig100901:873..1017Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100901 874..1017 +
1693494150.0244997-CDS-P-canaliculata_contig100901:873..10171693494150.0244997-CDS-P-canaliculata_contig100901:873..1017Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100901 874..1017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100901.170.1prot_P-canaliculata_contig100901.170.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100901 874..1017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100901.170.1

>prot_P-canaliculata_contig100901.170.1 ID=prot_P-canaliculata_contig100901.170.1|Name=mRNA_P-canaliculata_contig100901.170.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=48bp
MKLLPARPSLEYLYREARAIKSRHRRADTSVCSVIGHFDTSLHGLSPE
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mRNA from alignment at P-canaliculata_contig100901:874..1017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100901.170.1 ID=mRNA_P-canaliculata_contig100901.170.1|Name=mRNA_P-canaliculata_contig100901.170.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at P-canaliculata_contig100901:874..1017+ (Pelvetia canaliculata dioecious)
ATGAAACTCTTGCCTGCCCGTCCGAGCCTTGAGTACCTGTATCGCGAAGC
CAGGGCGATAAAATCGCGCCATCGCCGTGCAGACACGTCTGTTTGCTCGG
TCATTGGCCATTTCGATACATCGCTACACGGCTTGAGCCCGGAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig100901:874..1017+

>mRNA_P-canaliculata_contig100901.170.1 ID=mRNA_P-canaliculata_contig100901.170.1|Name=mRNA_P-canaliculata_contig100901.170.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at P-canaliculata_contig100901:874..1017+ (Pelvetia canaliculata dioecious)
ATGAAACTCTTGCCTGCCCGTCCGAGCCTTGAGTACCTGTATCGCGAAGC
CAGGGCGATAAAATCGCGCCATCGCCGTGCAGACACGTCTGTTTGCTCGG
TCATTGGCCATTTCGATACATCGCTACACGGCTTGAGCCCGGAGATGAAA
CTCTTGCCTGCCCGTCCGAGCCTTGAGTACCTGTATCGCGAAGCCAGGGC
GATAAAATCGCGCCATCGCCGTGCAGACACGTCTGTTTGCTCGGTCATTG
GCCATTTCGATACATCGCTACACGGCTTGAGCCCGGAG
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