mRNA_P-canaliculata_contig1009.169.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig1009.169.1
Unique NamemRNA_P-canaliculata_contig1009.169.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig1009.169.1 vs. uniprot
Match: D7G0G0_ECTSI (ILEI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G0_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 5.020e-16
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:   82 MGNVFEHESRPVGEGRHVSFVDADVLEDDLKWLALKGSMLFDDDFLEEEYANLPQYDGTELPQELGNEPERGESSQQFSAWKTGREGGDHFVRRMLQIV 378
            MGNV EH          V+  DADV+E+DLKWL++KGSMLF+DDFLEEEY +LP Y+GTE+    GN+   G S++       G   G   VRRMLQ++
Sbjct:    1 MGNVLEHAGS-------VAIDDADVVEEDLKWLSVKGSMLFNDDFLEEEYTSLPPYEGTEMLPVQGNDGSPGLSAEADVG--VGGLHGQDAVRRMLQLL 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1009.169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0G0_ECTSI5.020e-1649.49ILEI domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig1009contigP-canaliculata_contig1009:21549..27223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue7.4e-14
Seed eggNOG ortholog2880.D7G0G0
KEGG koko:K21991
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categoryother localisation
Exons4
Model size383
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig1009.169.1prot_P-canaliculata_contig1009.169.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig1009 21551..27223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.6954272-CDS-P-canaliculata_contig1009:21550..216611622815582.6954272-CDS-P-canaliculata_contig1009:21550..21661Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 21551..21661 -
1693494149.963113-CDS-P-canaliculata_contig1009:21550..216611693494149.963113-CDS-P-canaliculata_contig1009:21550..21661Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 21551..21661 -
1622815582.708822-CDS-P-canaliculata_contig1009:23009..230961622815582.708822-CDS-P-canaliculata_contig1009:23009..23096Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 23010..23096 -
1693494149.980883-CDS-P-canaliculata_contig1009:23009..230961693494149.980883-CDS-P-canaliculata_contig1009:23009..23096Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 23010..23096 -
1622815582.721938-CDS-P-canaliculata_contig1009:26767..268921622815582.721938-CDS-P-canaliculata_contig1009:26767..26892Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 26768..26892 -
1693494149.9939249-CDS-P-canaliculata_contig1009:26767..268921693494149.9939249-CDS-P-canaliculata_contig1009:26767..26892Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 26768..26892 -
1622815582.7322621-CDS-P-canaliculata_contig1009:27165..272231622815582.7322621-CDS-P-canaliculata_contig1009:27165..27223Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 27166..27223 -
1693494150.007666-CDS-P-canaliculata_contig1009:27165..272231693494150.007666-CDS-P-canaliculata_contig1009:27165..27223Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 27166..27223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig1009.169.1

>prot_P-canaliculata_contig1009.169.1 ID=prot_P-canaliculata_contig1009.169.1|Name=mRNA_P-canaliculata_contig1009.169.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=127bp
LPREECVGAYSQLDNTLKRGCLQVLIAMGNVFEHESRPVGEGRHVSFVDA
DVLEDDLKWLALKGSMLFDDDFLEEEYANLPQYDGTELPQELGNEPERGE
SSQQFSAWKTGREGGDHFVRRMLQIVV
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mRNA from alignment at P-canaliculata_contig1009:21549..27223-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig1009.169.1 ID=mRNA_P-canaliculata_contig1009.169.1|Name=mRNA_P-canaliculata_contig1009.169.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5675bp|location=Sequence derived from alignment at P-canaliculata_contig1009:21549..27223- (Pelvetia canaliculata dioecious)
CTCCCTCGAGAAGAGTGTGTTGGAGCCTATAGCCAACTCGACAACACTCT
TAAAAGAGGTGACGATCTACCAGGGCCGCGCTTTTTCGGTAAACCGTTAC
TGTGGCTATTACGAAGTGCCTCGCACTTCTGTGGAAGCTCCTCAATTGAA
AGCAGTGACTTCAAGGATCTCCGCCCCCGGGGTACTTGGACTTGTACCTC
GCACTGCCTTTCTTTTTAAAATTAAACGTAGTATTCTACAGCAGTAAGTA
GTTCGTATTTTGCGTCCTTATAAGTGCGGTGTAACAAAGCGGGAAGCTGA
AGGTTCGGCTATTGCCATTGCTGACATTCAGGTTGCCTACAAGTATTGAT
CGCCATGGGGAACGTGTTCGAGCATGAGTCCAGGCCCGTGGGTGAGGGGC
GTCATGTTTCGTTCGTGGACGCTGACGTTCTCGAGGATGACCTCAAGTGG
CTCGCGGTGAGAGACAGTTTTTCGCACTCTATTTTTAGAATACGAACTTG
TATGAACTGTTACAAGTGCAGCAGCAGATACTATTGTTTACTATTGTAAA
CAACAACTGATTTTTCTTTAAACAACTGACTGGGGGATGGATGCTCAGAA
GTTCTAGGCGCGTTCTGATTTTTCTTTAAACTGTCTAGAAATAAGAGAAG
TGTACCTGCAGGAATTCAATCTTCAACTAAATAAGTAATCTGCAGAATAC
TAGTAGAGGCACTTACTGTACATCAGAGTTCCATGCTGTAAATGCATTGA
AGTACCACTGCTATAGGACAGGTATACATTCTGAAGATTTGTTAGTTGTG
GAGTCGAGTTAGCTCTATTATTCGGACATAGTAATCGCTTCGACTACAAG
GTACTGCGTGGAGCCGCAGCCTTGGCAACAGTCGGCCGTTTAGATGCCAT
GAAGGCAGCACATCACCTCCACCTTGTTCTCGAACTGTTCGGCGGCAATG
AATCTCTTCCGAGTACAGTACATTATATACAGTACATGAAATTACATCCT
GTGTCGTCCGTCTACAACAACAGCGCATCGTACAAGGCATCGTGACGTTC
GTTACGCCTTCCCAACACGTTATTTATCGCCAACCTTTTCTCCGAGTACA
CACTAAAGAAGTATATAATTATGCTGGTGGTTGCATCTGCTCACAGCATT
TTCACGTTTCTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCCTCCGAT
CTCTGCTCAGTACCTACTAGCATCCTTACTGGTTCAACTGACGCGAACGC
CTTCCGTGGTCACAGGCTAACTACCCAAAAAGGATACATACTATGAAAAA
TCGAAGAGAAATATATGGACCCAGAAAAGTCAACACACACGCGATAATTG
GAAAAAAACAGAAAAATAAGGCTCCAGGCAGTATCGGGCTGGCAACCAAT
ACGCTGAATGTGAGAAACAACAACAACAACAGTCAGACGTCGCAGGGGAC
ATGTCGGACAAAGGAGATAGATGGAGCTCATCGCTCCCACTCGACACACG
AGGCCAAGCAAAATAAAACAAACAAGAAGAATCAAGAATCACCAATCAAG
ACAATAAAATCGCATGATTATATCCTTGTAGGAAGCATTATTAATATCAT
TTGTAGTAAATAGTACTGTAGAGAGACATAATCTACAACAAAAACGAGAG
AGCTTAGCTGTGCACACCTACGCGTCGCTCGCGTCGGAACGTGAACCAAA
AGTATTTCCTCTGTGATGTTCGCTCTGTACGAGGAAAGCACCAGAATAAT
ACTTCGTGGCTAATGCAGTCAGCATACAGTAATACAAGTAACAATTATCG
TAAAAGAACAGCAAGATTTTGTAAAGTACGTGCAATACTCGTCATATTAT
TTGATCACAAATGTACTGAAGTAGTATTTCATATTTCATATTCTGAAGAA
TTCCATCTACAACATTAGAGGTACCTCGGTAATCTGTGAGCTTCTGAGCA
TCCACCAGTCAGGGGGAAAATGTCAAAACGTTAAAACCAGACCGCTTCGT
GGCATTCGAACGCGTTCCCCGATGGTAGTAACATTGGGTCAATAGTATAT
ATAATTAAATAGGTTATCAATACCAGGTGGTAATTATATACGATGATGGT
TGCGTCGAACCATATACCTGGTAGTCTAGAACACAAAGAACGTCATGATA
TTATATTTGAAGAGTGGTACACTTTCGTTTTACAAGTCCGTAGGGACCTG
TTACCTTTTTCAGTACGTGTTTGTATTTCACACTACGTGCTACTTTTGTG
ACAACAGGATGAGTAAGGTATAGGACAGCTAGTGGTAGCGGTAAATACAT
AAGTTTTGGATTAAGGATTGAAACAGGACAGGACCGCCTTCGTAGATATC
TTCGACATAATCCAGACAGAAGGAACCACCGGTATACACCTGAAAGTAGA
CGAAGTTGTACGATCAGATGAATTTCAAAGGACACTCGAGTTTGCTCCTT
GTTCCTTGCCCGCCGGGTGTATTTTTCAGTAGTGGAAAAGATATTGTTGA
CGTTGACGCCCAAGTTTATGGAAATGGCGCGGCAAATGCAATTTTATTGG
GTTCCCACTTGGCGCGAGCGTTTCTCCTGCGCATTCGTTACTTCCTTGAA
GGAGCGAGCCTGACGAGAAGGACCTGCGAGCACGGTAGCTTCGTGAACAA
ATAGAGTACAGTACCTGTCCCCGAAGAGATAGGGACTCGCACGGGGATGG
ATTGATTGATTGTGTATGTCGCAGAAAGTAGGCTGATCGTGACCGCAGGC
TTTTGGTTTGGGGATTTGGAGCACTTGATTTGGAAAAGATTCGAAAACGT
GGCAGGACAATGGCGGCACTCATCTCGGTTATGATGCAACTATTGTATGA
ATATAATACAAACAGGAAATGCTCAAAAGCTACTGCTGTAGAGGGGGTTG
GCGACTGTTGTGCGGTGCCAGAGGAGGAGACCTGCACGTTTCATCTCTCG
TCATCTTGCAGTCCTTCTGAAGCCACTGCTTGGAACCCGTCGGCTCAGAG
TCGGTCTTAACGCTCCCCCCCCAAAAAAACTCCTATCTGCCAAAGTTTGA
AAGTTGTTTGAAAGTTGTTTCGCTTCCAAACATTGGAAACGAAATCTCCA
GGTACAGTAGGCTCGGATATGTTCATTTTCCAAGTTTGAAAGCGTTCCAA
GCTTACACGCACCGAACTGCAACTGGGGGTTGTAGACCCTATTCATGATC
AACGCCCCTCTCTGATCAAGAGCAATTAGCAATTGTTGATGGTACAAGTC
CGAAGAGCAAACCGTCCCCAGCAGTGTGCCTGAATAGCTTCACGATGATG
AGACCACTGCTGCTGCGATGATGTACGATGGTGTAAAATTACAGAGAGGT
GAGGGGTTGTGCACTAACCACTTTTACTGTAATACATAGTTCATAGTATT
AATAACTGTTTTGGATGGCTCACTCCCGCGTTGTGTTGGGTATCCTTGGT
ATCCTTGATAGCCTTGGTATCTAATCGACACATTCGCGCGGCGGGACTCC
GTAGGGCAACTCCCTGATGCGCCATTTGTTTTTTAAAGAGTAGAAGCTAA
GTGAGCTGCGGCGTCCGGAGCAGGGTATCTCGGCCCTTGAGGCGCCATGC
GACGCTAGCTGCGCAGGCTGTCTGGTTTTGCTATCGCTATTTGCTGTAGC
TGTAGCTGTAGCCACACCCCATCACGAGGTACGCTCTTTACATAGCCCTC
GTTGGCCATGAAGAGGATTTAAATCGTACAGCAACGGTAAATAATGTGGG
AGCGCTCTACGGCCCCTAGTCGAACTCCCTGCAGATTGTGTCTTGTTGCT
CTGCCTCATTTACCACGAGGTTCGCTTCTGCACTGCCTGTGTCGACCATA
TTTTAAGGTTCGACCCGAGGGTGGGAAATATACATAAATGGGCCACCAAA
GGCAAAAACATATTTCACAAAATGCGCAACTTAAAATCGAGGGCGGGTCG
AGGCTTTTACCAACCCGGATTCCATTTAATGACAATTTTCCAAAATATTC
CCCGAACAGTCCAAATAACCAACTGCCAAGGTTTGCAAATTTGATCCTCG
ACGTTGCAACCGATCCTCACCCCCCGCTACTCTCTCTGTGTGTTCTCCAA
ACCGGCCTCGCTCGGCGTGCTCCCTAGCTAAAGGGATCGATGCTATTCGA
CGACGACTTCTTGGAGGAAGAATACGCCAACCTCCCGCAGTACGATGGGA
CGGAACTACCACAGGCAAGAATAACCAGGCTTTTCCAAGCTTTTCCAAGC
TTTTCTAGAACCTCGTACATCGCATCGTTGACAATCAATTCTAATAATAA
GTGAGTACCGTAGATGGGGGGGTGTAGCCATCCCTCGCCCCTCGAGTACA
CGAGAGAGGTACTCGTATACAAGTACTTGTACCCTGTGTGATTAACTTAC
AAAATAATGACGATGCTGGGTGGTCAATCATGCTAGTCATATACTATCGG
TCCACGAGATCTTCGCTCAATCGATGTATGCCGACGAATCGAATATGCCT
GCCGCTTTTTCCTATACTATATGTATGTATGGTCATCACATATAGCAAGA
GTATGGATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAGCTGATC
AGGGAAAACAAATATTCATCTGTCTCCGTTCGCGCCTGAAAATTTGGCCT
CTCAAAACGGGTTCGGCAGTCCCGTACCGCGTCAGCCTGCTCATCTCCAC
ACTCACGCTGAATCTGGTGCTTACTTACGGGATCCCTCCCGACTTCCGCG
ACATCGTCCATTTCTATAGTTCCAGTATCCAGTTGTCGGAAAGTGGGGGT
AGAGGGGGGTTATTCGTGTACTGTAAATGTGTTGTATTTTGGTCAATACG
TGCTTTATAGAACCATAACGGGGTGGGTGGCGCAGTCGCAGCATGAGCAC
CAGGCGTAACTGTACAGTACTTCTGAAAGGTACGTCACGTACGTGACAAG
ACTTACTCGTAAATATGATGGAAATCCCACCCTCAGCTACCGATAATCAA
CATCAACACATTGCCATCATTACCATCATCACCGTCAGCTATTCTATTCT
ACTAATATCAGGCACCATCAGCCACAATTATCATTGTCAGTTATCATCAC
CTTAGTCAACCATCATCACTATATCATTCAGCCACCGCCATCACCATTTT
GCGATCGCGCTTTTCCGTGTTAGGGCTGTAGCGCTACTGACGTCACGAGT
TATACTGCAGTGGAAGCTAGACGTATTGTAAGGGTGAGGTATTTTGACGT
CTACTGCGCGGCTCCTGTGCCCTACCCCCCGTTTTCTCGCATGTCTGAAC
CGAGGCGTCTACCTTGAATATCGAGCGACTAACGCAATCCTCGTTGAGGA
TGGTTTGGGGCATCAAGGGGAGAATATATAGTGTATAGTGTGTCGAGAGA
TAGAATAGAGAGGGAAGGGGGGTTGTGTATTCCGGTCGCCACACCTTTTT
AAACACGAAAGCTCATTGGTTGTTAGTTTTTTATACACGCCCAAGCATGA
CGCAGACCCATGGTACTGTCTGTGTTTCCCTTGTCTTTTGTGTGCACGTC
GCTAACGCGTAGGAGCTTGGGAATGAACCAGAACGAGGCGAGTCTTCCCA
ACAATTTTCCGCGTGGAAAACGGGCCGCGAGGGCGGAGATCACTTCGTTC
GGCGGATGCTTCAGATTGTAGTGCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig1009:21549..27223-

>mRNA_P-canaliculata_contig1009.169.1 ID=mRNA_P-canaliculata_contig1009.169.1|Name=mRNA_P-canaliculata_contig1009.169.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at P-canaliculata_contig1009:21549..27223- (Pelvetia canaliculata dioecious)
CTCCCTCGAGAAGAGTGTGTTGGAGCCTATAGCCAACTCGACAACACTCT
TAAAAGAGCTCCCTCGAGAAGAGTGTGTTGGAGCCTATAGCCAACTCGAC
AACACTCTTAAAAGAGGTTGCCTACAAGTATTGATCGCCATGGGGAACGT
GTTCGAGCATGAGTCCAGGCCCGTGGGTGAGGGGCGTCATGTTTCGTTCG
TGGACGCTGACGTTCTCGAGGATGACCTCAAGTGGCTCGCGGTTGCCTAC
AAGTATTGATCGCCATGGGGAACGTGTTCGAGCATGAGTCCAGGCCCGTG
GGTGAGGGGCGTCATGTTTCGTTCGTGGACGCTGACGTTCTCGAGGATGA
CCTCAAGTGGCTCGCGCTAAAGGGATCGATGCTATTCGACGACGACTTCT
TGGAGGAAGAATACGCCAACCTCCCGCAGTACGATGGGACGGAACTACCA
CAGCTAAAGGGATCGATGCTATTCGACGACGACTTCTTGGAGGAAGAATA
CGCCAACCTCCCGCAGTACGATGGGACGGAACTACCACAGGAGCTTGGGA
ATGAACCAGAACGAGGCGAGTCTTCCCAACAATTTTCCGCGTGGAAAACG
GGCCGCGAGGGCGGAGATCACTTCGTTCGGCGGATGCTTCAGATTGTAGT
GGAGCTTGGGAATGAACCAGAACGAGGCGAGTCTTCCCAACAATTTTCCG
CGTGGAAAACGGGCCGCGAGGGCGGAGATCACTTCGTTCGGCGGATGCTT
CAGATTGTAGTG
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