mRNA_P-canaliculata_contig1009.166.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig1009.166.1
Unique NamemRNA_P-canaliculata_contig1009.166.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig1009.166.1 vs. uniprot
Match: D7G0G0_ECTSI (ILEI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G0_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.170e-20
Identity = 59/102 (57.84%), Postives = 78/102 (76.47%), Query Frame = 3 
Query:    6 PFPAMTTDSRHLILV--HASEVKAEETETXXXXXXXXXXRRS-RSLEIMFLDPEDGYRLVRTASLPWNVDESALHRSALVCDGDRLVMLEPQNVGRMLQRTA 302
            PFPAMTTDSRH+ILV    S  + ++  T  XXXXXX    S R LE++FLDPEDGYRLVRTA+L W +DE+ LH++A++CDG+RLVML  ++ G +++RTA
Sbjct: 1171 PFPAMTTDSRHIILVCPAGSGQEGDDPSTAAXXXXXXGDGDSPRRLEMLFLDPEDGYRLVRTATLAWGMDETELHQNAVLCDGERLVMLTHRHSG-VVKRTA 1271
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BLAST of mRNA_P-canaliculata_contig1009.166.1 vs. uniprot
Match: A0A6H5K114_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K114_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.060e-20
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 3 
Query:    6 PFPAMTTDSRHLILVHASEVKAEETE---TXXXXXXXXXXRRSRSLEIMFLDPEDGYRLVRTASLPWNVDESALHRSALVCDGDRLVMLEPQNVG 281
            PFPAMTTDSRH+ILV  +E   E  +                 R LE++FLDPEDGYRLVRTA+L W +DE+ LH++A++CDG+RLVML  ++ G
Sbjct: 1015 PFPAMTTDSRHIILVCPAEGGQEGDDPNIAAAAATALGDDDSPRRLELLFLDPEDGYRLVRTATLAWGMDETDLHQNAMLCDGERLVMLTHRDSG 1109
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1009.166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0G0_ECTSI1.170e-2057.84ILEI domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K114_9PHAE4.060e-2051.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig1009contigP-canaliculata_contig1009:7662..8993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue6.6e-15
Seed eggNOG ortholog2880.D7G0G0
KEGG koko:K21991
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig1009.166.1prot_P-canaliculata_contig1009.166.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig1009 7662..8976 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.4883277-CDS-P-canaliculata_contig1009:7661..78391622815582.4883277-CDS-P-canaliculata_contig1009:7661..7839Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 7662..7839 -
1693494149.793659-CDS-P-canaliculata_contig1009:7661..78391693494149.793659-CDS-P-canaliculata_contig1009:7661..7839Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 7662..7839 -
1622815582.5013103-CDS-P-canaliculata_contig1009:8869..89761622815582.5013103-CDS-P-canaliculata_contig1009:8869..8976Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 8870..8976 -
1693494149.8150556-CDS-P-canaliculata_contig1009:8869..89761693494149.8150556-CDS-P-canaliculata_contig1009:8869..8976Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 8870..8976 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.5126586-UTR-P-canaliculata_contig1009:8976..89931622815582.5126586-UTR-P-canaliculata_contig1009:8976..8993Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1009 8977..8993 -
1693494149.8233693-UTR-P-canaliculata_contig1009:8976..89931693494149.8233693-UTR-P-canaliculata_contig1009:8976..8993Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1009 8977..8993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig1009.166.1

>prot_P-canaliculata_contig1009.166.1 ID=prot_P-canaliculata_contig1009.166.1|Name=mRNA_P-canaliculata_contig1009.166.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=95bp
MTTDSRHLILVHASEVKAEETETEAETEAQEEARRSRSLEIMFLDPEDGY
RLVRTASLPWNVDESALHRSALVCDGDRLVMLEPQNVGRMLQRTA
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mRNA from alignment at P-canaliculata_contig1009:7662..8993-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig1009.166.1 ID=mRNA_P-canaliculata_contig1009.166.1|Name=mRNA_P-canaliculata_contig1009.166.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1332bp|location=Sequence derived from alignment at P-canaliculata_contig1009:7662..8993- (Pelvetia canaliculata dioecious)
CGTCGCCATTCCCGGCGATGACCACGGACTCTCGGCACTTAATACTCGTA
CATGCGTCGGAAGTCAAAGCGGAAGAAACGGAAACAGAAGCGGAAACGGA
GGCGCAGGAGGAGGCGCGGCGCAGGTGAAAAAGTGACACCTGGTATGTTT
TTTTTGTGTTCAAGCAGACATACCTCCGATAACTTCTGTATCACACAACA
TGCCCACTTTATACCAATAATGGGTGTGGGAAAAGAGAGGCGCACACTAA
TTGGTCCATGGTGAGACGTGCAAGGGCAGCATGCGTTACTGGAACTACTT
CGAGGACTACTGGCTCTGTGCCGGCAGACTCTCGGCAGTGAACGTCATCG
CTACGCAATTGCGTGACCTGATAAACTCGAGGCTAGCCCGATGGCGGTCG
ACGGCATAAATAGACGCCGTCGTGGAAAGCGGGAGGAATCCCGTGAGAAA
GCACCAGATCCAGCCTGAGTATAAAGAATGAGTAGGCTAACGCCGGACGG
GACGGCCGAATCTGTCTCGCGAGACCAAATTCTCAGGCCCGAACGGGGAA
AAAAAAACATTGTCCCTGTTGAACTGACCACGAGCAGGATTGGCCTTACT
CGGTCGATCTATACCTTGCTTTCAGTAATGATCATACCACACACATACTG
TGCGGAGGAGGGCTATTGAATCAAATAATTGTGCGCCTGGTTGGTTGGAT
GGATGCCGGCACAGCTCTCTCTCTCTCCCGCTCAAATTGATCAAATTAAT
GTATGATGATTGCCAACCGGACTTTGAAACGTATACATTCTTCCATGTCT
CCGTGTCTCCACCGGTACGCTCCGGTCGTTCCAATATTTTTTTCACTTTT
TTGACGACGCCGGAGATGAAAAGAAAAACTATTAACAGTAGCAGTAGTGT
AAACTTGCGTACTTCCACATGCACTCGCTCATCCTCCTGCTGTTCCGCCT
TTTTACGACCTCGTCCAAAAAAATAATATCAAAACGGCAGCAGGCCTTCG
ATCGCTAGACACGCTAGAGACGCTCTTGTCACACCCCCGACTCCCAAAGT
TGACTTTTTTGTTTTCGTTTCCCATCTGTCGCCCCTGCCCTCGTCCATGT
TACCGTACTCGTATCGTACCGTATTGTATTGTAATGTATTGTATTCGTGA
ATAGTCGAAGCCTTGAGATTATGTTCCTAGACCCAGAAGATGGGTACCGG
CTGGTGCGCACGGCGAGCCTTCCCTGGAACGTGGACGAATCTGCCCTACA
CAGGAGCGCTCTCGTATGCGACGGCGATCGCCTGGTGATGCTCGAGCCTC
AGAACGTTGGACGAATGCTGCAGAGGACGGCA
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Coding sequence (CDS) from alignment at P-canaliculata_contig1009:7662..8993-

>mRNA_P-canaliculata_contig1009.166.1 ID=mRNA_P-canaliculata_contig1009.166.1|Name=mRNA_P-canaliculata_contig1009.166.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at P-canaliculata_contig1009:7662..8993- (Pelvetia canaliculata dioecious)
ATGACCACGGACTCTCGGCACTTAATACTCGTACATGCGTCGGAAGTCAA
AGCGGAAGAAACGGAAACAGAAGCGGAAACGGAGGCGCAGGAGGAGGCGC
GGCGCAGATGACCACGGACTCTCGGCACTTAATACTCGTACATGCGTCGG
AAGTCAAAGCGGAAGAAACGGAAACAGAAGCGGAAACGGAGGCGCAGGAG
GAGGCGCGGCGCAGTCGAAGCCTTGAGATTATGTTCCTAGACCCAGAAGA
TGGGTACCGGCTGGTGCGCACGGCGAGCCTTCCCTGGAACGTGGACGAAT
CTGCCCTACACAGGAGCGCTCTCGTATGCGACGGCGATCGCCTGGTGATG
CTCGAGCCTCAGAACGTTGGACGAATGCTGCAGAGGACGGCATCGAAGCC
TTGAGATTATGTTCCTAGACCCAGAAGATGGGTACCGGCTGGTGCGCACG
GCGAGCCTTCCCTGGAACGTGGACGAATCTGCCCTACACAGGAGCGCTCT
CGTATGCGACGGCGATCGCCTGGTGATGCTCGAGCCTCAGAACGTTGGAC
GAATGCTGCAGAGGACGGCA
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