mRNA_P-canaliculata_contig1009.165.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig1009.165.1
Unique NamemRNA_P-canaliculata_contig1009.165.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig1009.165.1 vs. uniprot
Match: D7G0G0_ECTSI (ILEI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G0_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 7.710e-45
Identity = 94/152 (61.84%), Postives = 110/152 (72.37%), Query Frame = 1 
Query:   46 VARVRAMLASASPAHRLKGLEGA-----EGAALSRES--ESTAFRAKRDAALLLGYLDRLCEPYGPPQETMADSRVRYELEAASGGSEDGNFSRLLVRGHDWSSKEPGVNVLVLTEMLDAGGQMAKGFDIRESLDATNRLADYINAVAQGRT 480
            +A  R ML S+SP HR++GLE A      G A S E   +     A+  AALLLGYL+RL EPYGPP+E +A+ RVR ELEAASGG +DGNFSRLLVRG D S KEPG+NVLVLTE LDAGGQ+A  F   ES+ A+NRLADY+N V QGRT
Sbjct: 1397 MAWARIMLGSSSPCHRVEGLEEAGLLDLHGPAGSGEEGGDKAVLCARGHAALLLGYLERLGEPYGPPEEDVAEPRVRCELEAASGGKDDGNFSRLLVRGEDRSCKEPGMNVLVLTETLDAGGQVATTFATHESVHASNRLADYLNNVPQGRT 1548
[Close]
BLAST of mRNA_P-canaliculata_contig1009.165.1 vs. uniprot
Match: A0A6H5K114_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K114_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 9.240e-44
Identity = 93/152 (61.18%), Postives = 109/152 (71.71%), Query Frame = 1 
Query:   46 VARVRAMLASASPAHRLKGLEGA-----EGAALSRES--ESTAFRAKRDAALLLGYLDRLCEPYGPPQETMADSRVRYELEAASGGSEDGNFSRLLVRGHDWSSKEPGVNVLVLTEMLDAGGQMAKGFDIRESLDATNRLADYINAVAQGRT 480
            +A  R ML S+SP+HR++GLE A      G A S E   +     A+  AALLLGYL+RL EPYGPP+E +A+ RVR ELEAASGG +DGNFSRLLVRG D S KEPG+NVLVLTE LDAGGQ A  F   +S  A+NRLADY+N V QGRT
Sbjct: 1171 MAWARIMLGSSSPSHRVEGLEEAGLLDLHGPAGSGEEGGDKAVLCARGHAALLLGYLERLGEPYGPPEEDVAEPRVRCELEAASGGKDDGNFSRLLVRGEDRSCKEPGMNVLVLTETLDAGGQAATTFATHQSEHASNRLADYLNNVPQGRT 1322
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1009.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0G0_ECTSI7.710e-4561.84ILEI domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K114_9PHAE9.240e-4461.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig1009contigP-canaliculata_contig1009:1094..2782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue1.4e-38
Seed eggNOG ortholog2880.D7G0G0
KEGG koko:K21991
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categoryother localisation
Exons3
Model size483
Cds size480
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig1009.165.1prot_P-canaliculata_contig1009.165.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig1009 1096..2782 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.4281862-CDS-P-canaliculata_contig1009:1095..12701622815582.4281862-CDS-P-canaliculata_contig1009:1095..1270Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 1096..1270 -
1693494149.762471-CDS-P-canaliculata_contig1009:1095..12701693494149.762471-CDS-P-canaliculata_contig1009:1095..1270Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 1096..1270 -
1622815582.4397385-CDS-P-canaliculata_contig1009:1452..15291622815582.4397385-CDS-P-canaliculata_contig1009:1452..1529Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 1453..1529 -
1693494149.774316-CDS-P-canaliculata_contig1009:1452..15291693494149.774316-CDS-P-canaliculata_contig1009:1452..1529Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 1453..1529 -
1622815582.4521143-CDS-P-canaliculata_contig1009:2554..27821622815582.4521143-CDS-P-canaliculata_contig1009:2554..2782Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 2555..2782 -
1693494149.7821991-CDS-P-canaliculata_contig1009:2554..27821693494149.7821991-CDS-P-canaliculata_contig1009:2554..2782Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 2555..2782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig1009.165.1

>prot_P-canaliculata_contig1009.165.1 ID=prot_P-canaliculata_contig1009.165.1|Name=mRNA_P-canaliculata_contig1009.165.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=160bp
FAPPPPPQTPPGHSPVARVRAMLASASPAHRLKGLEGAEGAALSRESEST
AFRAKRDAALLLGYLDRLCEPYGPPQETMADSRVRYELEAASGGSEDGNF
SRLLVRGHDWSSKEPGVNVLVLTEMLDAGGQMAKGFDIRESLDATNRLAD
YINAVAQGRT
back to top

mRNA from alignment at P-canaliculata_contig1009:1094..2782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig1009.165.1 ID=mRNA_P-canaliculata_contig1009.165.1|Name=mRNA_P-canaliculata_contig1009.165.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1689bp|location=Sequence derived from alignment at P-canaliculata_contig1009:1094..2782- (Pelvetia canaliculata dioecious)
TTCGCGCCGCCTCCTCCACCACAAACTCCTCCGGGACACTCGCCGGTCGC
GAGGGTGCGGGCCATGCTTGCGTCCGCATCACCAGCCCATCGCTTGAAGG
GACTAGAGGGTGCCGAGGGTGCAGCTCTCTCGCGAGAGAGCGAGTCGACG
GCGTTCCGTGCCAAGCGCGATGCGGCCCTGCTGTTGGGTTATTTGGACAG
GCTTTGCGAACCGTACGGTCCTCCACAGGTACGGGGCTATAGCTATACTG
CACAGGTATACCACACCACACCCCGGTTTTTTGTCTGGTTGATAGTTTTG
GCCGTTGACCATTTTTCGCTCCAAAACGAAGGCTATCTGTACACCCGGGT
GGGAGGTGTGACCCTATTTTTGTACCAAATACGTTTCAGTTGTACAGTAG
TGTACTGTAGTGCCAGCCAACGGGATAGGCGGGTGTGGTGTATGCCGTGC
TGCTATCAAAGAGAACTTCAAGTCGTCTGATATGTATGTATGGTCATCAC
ACATAGCAAGGGTAAGGATCAACCGGGTAAGGTTGCCAATCCTGCTTGTG
GTCAGCTGAACGGGAAGAATAAACATTTCCCTGTCCCCGCTCGCGCCTGA
GAATTTGGTCTCGCGAGACGGATTTAGCAGTCCCGTCCCGCGTCAGCCTG
CTCATCTCCATACTCAGGCTGAATCGGGTGCTTACGGGATTACTCCCGAG
TTCCGCGGCGGAGCCCATTTGGTAGTGTGATAGTTAGATGATGTGCAGGA
TCCAACGACCCCAATCTCTAAGCAATCAATAGGATTGTTGTCGAAAACTT
CCCCTCATTTTTTTAGTTTTGAGTGGATGAAAGGGGGCTTCTCTCCTGAT
CTAATAGGCTAAGCTACGAGTATCGATTATTACTGTGGTGAGTGTGTTCT
CCGACCAAAGTTCCCCTCCTCGCTCCGCCCAGAAAGTAATTCAAACCCTT
CCTTTTCACAAACGGGTTTGTTTTGGCTTTCGATTTGATCCCGATCCTTC
CCTTCCCGAAGTCTTTGAGTTGCCCACAGATACTCACTTATTAATAGTAT
AGCCGATGGGCCTTAACGTTACCATCGTGCCTGTGCTCCTTAAGGATCTT
TTCATCTTTCCCTGGTCCTCACCTATACTACCGACAGGATTGTTACATTA
ATAGTAAGTGTCACAGTATTAATAGAACAGAAGCTTTTCACTATTAATAG
ATAGAATGGCTTTGTTTCAATGCTTTCGTGTGTTTCTGCCGCATGTATGG
CAGGAAACGATGGCCGACTCCAGGGTGCGTTATGAGCTTGAGGCGGCCTC
TGGTGGATCAGAAGATGGAAACTTCTCCAGGTTCTGTACTGTATTGTACC
ATACTGTATTATATTGCACCATACCAGTACGGTACAGGCTCCGTATTACA
GTATTACACCGTACCAGTATTTTCCTGGGATTGGTCTTCAGTACTGCTAC
TTTATATTGATGCTGTAATTGAATCAAATGTAACCCGCTGCTGTGTGTCG
TTTGTCTTGAAGGCTGCTAGTGCGAGGACATGATTGGAGCAGCAAGGAGC
CGGGGGTCAACGTCCTCGTCTTGACGGAGATGCTGGACGCCGGGGGCCAG
ATGGCGAAGGGCTTCGACATCCGCGAATCTCTCGACGCCACCAACCGGCT
CGCCGACTACATCAACGCCGTTGCGCAGGGTCGGACGGT
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig1009:1094..2782-

>mRNA_P-canaliculata_contig1009.165.1 ID=mRNA_P-canaliculata_contig1009.165.1|Name=mRNA_P-canaliculata_contig1009.165.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at P-canaliculata_contig1009:1094..2782- (Pelvetia canaliculata dioecious)
TTCGCGCCGCCTCCTCCACCACAAACTCCTCCGGGACACTCGCCGGTCGC
GAGGGTGCGGGCCATGCTTGCGTCCGCATCACCAGCCCATCGCTTGAAGG
GACTAGAGGGTGCCGAGGGTGCAGCTCTCTCGCGAGAGAGCGAGTCGACG
GCGTTCCGTGCCAAGCGCGATGCGGCCCTGCTGTTGGGTTATTTGGACAG
GCTTTGCGAACCGTACGGTCCTCCACAGTTCGCGCCGCCTCCTCCACCAC
AAACTCCTCCGGGACACTCGCCGGTCGCGAGGGTGCGGGCCATGCTTGCG
TCCGCATCACCAGCCCATCGCTTGAAGGGACTAGAGGGTGCCGAGGGTGC
AGCTCTCTCGCGAGAGAGCGAGTCGACGGCGTTCCGTGCCAAGCGCGATG
CGGCCCTGCTGTTGGGTTATTTGGACAGGCTTTGCGAACCGTACGGTCCT
CCACAGGAAACGATGGCCGACTCCAGGGTGCGTTATGAGCTTGAGGCGGC
CTCTGGTGGATCAGAAGATGGAAACTTCTCCAGGAAACGATGGCCGACTC
CAGGGTGCGTTATGAGCTTGAGGCGGCCTCTGGTGGATCAGAAGATGGAA
ACTTCTCCAGGCTGCTAGTGCGAGGACATGATTGGAGCAGCAAGGAGCCG
GGGGTCAACGTCCTCGTCTTGACGGAGATGCTGGACGCCGGGGGCCAGAT
GGCGAAGGGCTTCGACATCCGCGAATCTCTCGACGCCACCAACCGGCTCG
CCGACTACATCAACGCCGTTGCGCAGGGTCGGACGGCTGCTAGTGCGAGG
ACATGATTGGAGCAGCAAGGAGCCGGGGGTCAACGTCCTCGTCTTGACGG
AGATGCTGGACGCCGGGGGCCAGATGGCGAAGGGCTTCGACATCCGCGAA
TCTCTCGACGCCACCAACCGGCTCGCCGACTACATCAACGCCGTTGCGCA
GGGTCGGACG
back to top