mRNA_P-canaliculata_contig1009.168.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig1009.168.1
Unique NamemRNA_P-canaliculata_contig1009.168.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig1009.168.1 vs. uniprot
Match: D7G0G0_ECTSI (ILEI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G0_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 7.240e-22
Identity = 61/121 (50.41%), Postives = 68/121 (56.20%), Query Frame = 1 
Query:    1 KVSIPRAYAWTASFAARLETASGPKFDAGMADGGTRGGDPSGG---------------------GCSNPATDGVYVYVWDACGMRVHKIGTGFHGTLPGNVYCSSGKIVDSIRDYKGMTPA 300
            KVSIP+   WTASF ARL+T +           GT G  PS                        C NPATDGVYVYVWDA   RVHK+GTGFHGTL GNVY SS K++D IR +KGM PA
Sbjct:  329 KVSIPKPGTWTASFPARLDTEAE----------GTSGSTPSSARRXXXXXXXXXXXXXXXXXXXXCCNPATDGVYVYVWDADTKRVHKVGTGFHGTLAGNVYLSSKKVLDDIRVFKGMEPA 439
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BLAST of mRNA_P-canaliculata_contig1009.168.1 vs. uniprot
Match: A0A6H5K114_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K114_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 7.290e-22
Identity = 61/121 (50.41%), Postives = 68/121 (56.20%), Query Frame = 1 
Query:    1 KVSIPRAYAWTASFAARLETASGPKFDAGMADGGTRGGDPSGG---------------------GCSNPATDGVYVYVWDACGMRVHKIGTGFHGTLPGNVYCSSGKIVDSIRDYKGMTPA 300
            KVSIP+   WTASF ARL+T +           GT G  PS                        C NPATDGVYVYVWDA   RVHK+GTGFHGTL GNVY SS K++D IR +KGM PA
Sbjct:  280 KVSIPKPGTWTASFPARLDTEAE----------GTSGSTPSSARRGXXXXXXXXXXXXXXXXXXXCCNPATDGVYVYVWDADTKRVHKVGTGFHGTLAGNVYMSSKKVLDDIRVFKGMEPA 390
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1009.168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0G0_ECTSI7.240e-2250.41ILEI domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K114_9PHAE7.290e-2250.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig1009contigP-canaliculata_contig1009:15465..18487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue5.5e-20
Seed eggNOG ortholog2880.D7G0G0
KEGG koko:K21991
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categoryother localisation
Exons5
Model size676
Cds size675
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig1009.168.1prot_P-canaliculata_contig1009.168.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig1009 15466..18487 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.3357677-CDS-P-canaliculata_contig1009:15465..155441622815582.3357677-CDS-P-canaliculata_contig1009:15465..15544Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 15466..15544 -
1693494149.7067394-CDS-P-canaliculata_contig1009:15465..155441693494149.7067394-CDS-P-canaliculata_contig1009:15465..15544Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 15466..15544 -
1622815582.3481886-CDS-P-canaliculata_contig1009:15832..158971622815582.3481886-CDS-P-canaliculata_contig1009:15832..15897Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 15833..15897 -
1693494149.7232912-CDS-P-canaliculata_contig1009:15832..158971693494149.7232912-CDS-P-canaliculata_contig1009:15832..15897Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 15833..15897 -
1622815582.361917-CDS-P-canaliculata_contig1009:16913..171201622815582.361917-CDS-P-canaliculata_contig1009:16913..17120Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 16914..17120 -
1693494149.7319381-CDS-P-canaliculata_contig1009:16913..171201693494149.7319381-CDS-P-canaliculata_contig1009:16913..17120Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 16914..17120 -
1622815582.3752258-CDS-P-canaliculata_contig1009:17628..177511622815582.3752258-CDS-P-canaliculata_contig1009:17628..17751Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 17629..17751 -
1693494149.741973-CDS-P-canaliculata_contig1009:17628..177511693494149.741973-CDS-P-canaliculata_contig1009:17628..17751Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 17629..17751 -
1622815582.3879766-CDS-P-canaliculata_contig1009:18286..184871622815582.3879766-CDS-P-canaliculata_contig1009:18286..18487Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 18287..18487 -
1693494149.7534192-CDS-P-canaliculata_contig1009:18286..184871693494149.7534192-CDS-P-canaliculata_contig1009:18286..18487Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1009 18287..18487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig1009.168.1

>prot_P-canaliculata_contig1009.168.1 ID=prot_P-canaliculata_contig1009.168.1|Name=mRNA_P-canaliculata_contig1009.168.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=225bp
KVSIPRAYAWTASFAARLETASGPKFDAGMADGGTRGGDPSGGGCSNPAT
DGVYVYVWDACGMRVHKIGTGFHGTLPGNVYCSSGKIVDSIRDYKGMTPA
SESRHGPQEGGSEAVEPTRRRATGFAGLDVEGGADGAGDGTSDEDEKYNE
GSSGDDDSKEDDDNEEEDDNDDDDGDDAGNTEGVMDATASAANSDEQGGV
RPAQGSSSPSWLSDPSYGAPPAEST
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mRNA from alignment at P-canaliculata_contig1009:15465..18487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig1009.168.1 ID=mRNA_P-canaliculata_contig1009.168.1|Name=mRNA_P-canaliculata_contig1009.168.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3023bp|location=Sequence derived from alignment at P-canaliculata_contig1009:15465..18487- (Pelvetia canaliculata dioecious)
AAGGTATCGATCCCCAGGGCCTACGCGTGGACTGCATCGTTCGCAGCCCG
CCTTGAGACAGCTTCTGGACCCAAGTTCGACGCTGGCATGGCAGACGGAG
GAACCAGGGGAGGCGATCCTTCGGGCGGGGGATGCTCCAACCCGGCCACG
GACGGAGTGTACGTTTACGTGTGGGATGCGTGTGGGATGCGGGTGCATAA
GGTGTGAGGATTTACAATTCAGGCGTGCGGTATGCTTTTATTATCGTTAC
AAAAGAGCAAATCAGTTACTCTCAGAAATAAGTTGCAATCGTATTACATC
AACAAGGGAAGGGGAGGAGGGAAATACAGTAAACGTATTGCAAGCGAAGC
ACCAAATGCATGCAACGCCAAGATACCCTCCGACAGCATTTTTCTTGCGC
TGAAATCGCGTTTGTACTCGTTGCAAACAACAGTGGTGACTGAACCTGTA
ACTTATAATGAAATCAACGGTAGCGTGAGCGGTAGCAGTGACAATCTCAA
GTGCGGACATCTATATCGGGTATCATTTCGGGGTGGCGGTCTTGACGGGC
TGCGAGGTCTCAATCAAGGGGCGACGGTTTGTCTGCGGCCCTTTTGGTTA
TATTTGTTTTTGGCCTCTAATTGGTTACTCTGGCAAAGCTGCAGGCGCCT
CTACGTACGAACCCGGTACAACGCCCAAAGTGTAATCAAGCGGCGCAATT
TCATTTTATTTTTTGTGCCTCTTGGCCCTTGTTCAGATCGGGACGGGTTT
CCACGGAACCTTGCCCGGAAACGTGTACTGCTCGAGCGGGAAAATCGTCG
ATAGTATCAGAGACTATAAGGGTATGACACCGGCATCCGAATCACGGCAT
GGCCCACAGGCGAGAATCGGTTTCAAGAGAGAAAGTCACATTGGTTTTGT
TGGAGTTGCAATGGCGTTTTCAGTAGCTGGATGAGGTGGGGTCGAGGTCA
TCGCTGACTTTGAGTTGGGCCTGTACGGGATATCGAGGGAGGGAGACAAC
TAAATTGCAGTTCCACGATTAGAGAGCTTGCTGCGTACGCGTGCGAGAGA
AGAGTTGACCTGTGACGTCACGCGCGAGCCGTTTACTTGGCATCATGGCA
CGGTTGCACGATATGGACTGTTGCTCCGCCGCAATCAATTTGCTTTCTCT
CTCCCTATGCTAGAGCCTATTCTTGAGAGTGACTCGAGCACAGGACCCTG
CCGCTTCGATCGAAACAAAAATACCGTAGGTTTTTGCGTTTCTGTGCTGT
ACTGCTGTACTGCTGTGCACTCGCAACCCAGAAAGTCTTGCGTGCTCCAC
GTATGCTGTAAATTGTGTGCATCCTGGTTACACCTTGAGATGTCGGTATT
TTTTCTTTATGCTTCAGGAGGGCGGCTCGGAGGCGGTGGAACCGACCCGG
CGGCGAGCGACGGGCTTTGCGGGTTTGGACGTCGAGGGAGGTGCTGACGG
CGCTGGGGACGGGACGAGTGATGAAGACGAAAAATATAATGAAGGAAGTA
GTGGAGATGATGATAGCAAAGAAGATGATGATAATGAAGAAGAGGATGAT
AATGATGATGATGACGGTGACGATGTGAGTGGTAGGATGTCTAGGGTGGC
GTTTGAGCACGCGGAAAGGCGTTGGATTGGGTTGCACCTTACTGTGCAAC
ACTCCTGTAGTGCTTTGCAAGTTACAGCACTGCACTGTACATTAAGGTAC
ATGCTGTTCAGACAACTGGAAGGCTATTGAAGGTACTCTTTGTAAGATAT
GTATTGTGTAAGGAACTTGCCTATAACTTGCCGCAAAAAATAGATCTAAC
CATGGAGGGTAGCTCCAACGTGGAATGGCCGATAGAAGAGCGTCGGACGG
GGAAGCCTCTCGGTGGGGGGTCTGCAAGCGAAGGGCGCTTAAGCACCGCC
TTTTCGTACTTAAGTGTCGCACTAATTTTTTGTATGATGAACCGAAACCG
AGAGGGTAAGCAATGGAGGGAATCAGACCCCCGAGATGTATAGACCCAAC
GCAAGCTCAACCGGAGTGAATAAAGAACCAGTCCAATCCAGCCCCAATCT
GTCTCGCCCCACGGGATATATGTAGGTGTATTTCGGCACTGCAAAGGGCT
ATAGAGCAGAGCCTGGATGTCGAATGCTCTGGCAATCGTGAAACTACAGC
TTCTCCGCTCCAATCCGAATTCTGCGCTCGTTCGGATTCGCGCCAGCGCC
AGCCGAATTGCACGTCTCTCCTCGAATCGATCTAATCCATCTAATCGATC
TTGGGACGATCTGATGGATTATCTTTGGCAAACTATGCGACGCGGTAGCC
GAAACTTCCGAAGGGATACGGTAAACGTCACAAGAGAAAAAACGAAACTA
CGCATCCATCTGTTGTTGCATTGTGATGGAACAAGTGGTTTAAAATGGTG
CGCGCTGCCATGGAAAACTTTAGATCGTGCGCAGTTTAGAGCAGCCGGGT
CGACGCCTCATCAGTTTTTTTTTTCGTTTTTTTTTTCTACTTGCTAATCT
TGCGTTTTCCTTCACCCACGTGTAATTCATGTTCTCTTTTGGGGGGTTCC
TTGCTTTTTTCCTTGTTTCATGTTCAATTTTCCCCCCCAGGCTGGTAACA
CCGAAGGCGTAATGGACGCGACAGCATCTGCAGCGAACAGCGATGAACAG
GGAGGGTGAGTCTTGAAGCAAAACAATTTTCCCCCTTTGCCCTACTCGGA
AAAATGGACCTATTAACTATTAATAGCACTAATACTTTTAACAGAACGAT
GTAGACTACGGCACCCTGCAAATACAGCAGTAGCTTGTCACGTTTGTGTT
ATTTCTAGTCTAATGAATTTAGTCTTGTCTTGTTTCCTGTTTTATTTTAT
TTCATTTATTTCGTTCCTTCATTTCTCTCTCTTCTTTTTAGTTGTTTGAC
CTTGCTGTATCCGACCCGCGCGTACGTGCTTGCGTTCCGGCAGGGTCCGC
CCTGCGCAAGGCTCATCGTCGCCCTCATGGCTGTCGGATCCATCGTACGG
CGCACCTCCTGCCGAGTCCACGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig1009:15465..18487-

>mRNA_P-canaliculata_contig1009.168.1 ID=mRNA_P-canaliculata_contig1009.168.1|Name=mRNA_P-canaliculata_contig1009.168.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1350bp|location=Sequence derived from alignment at P-canaliculata_contig1009:15465..18487- (Pelvetia canaliculata dioecious)
AAGGTATCGATCCCCAGGGCCTACGCGTGGACTGCATCGTTCGCAGCCCG
CCTTGAGACAGCTTCTGGACCCAAGTTCGACGCTGGCATGGCAGACGGAG
GAACCAGGGGAGGCGATCCTTCGGGCGGGGGATGCTCCAACCCGGCCACG
GACGGAGTGTACGTTTACGTGTGGGATGCGTGTGGGATGCGGGTGCATAA
GAAGGTATCGATCCCCAGGGCCTACGCGTGGACTGCATCGTTCGCAGCCC
GCCTTGAGACAGCTTCTGGACCCAAGTTCGACGCTGGCATGGCAGACGGA
GGAACCAGGGGAGGCGATCCTTCGGGCGGGGGATGCTCCAACCCGGCCAC
GGACGGAGTGTACGTTTACGTGTGGGATGCGTGTGGGATGCGGGTGCATA
AGATCGGGACGGGTTTCCACGGAACCTTGCCCGGAAACGTGTACTGCTCG
AGCGGGAAAATCGTCGATAGTATCAGAGACTATAAGGGTATGACACCGGC
ATCCGAATCACGGCATGGCCCACAGATCGGGACGGGTTTCCACGGAACCT
TGCCCGGAAACGTGTACTGCTCGAGCGGGAAAATCGTCGATAGTATCAGA
GACTATAAGGGTATGACACCGGCATCCGAATCACGGCATGGCCCACAGGA
GGGCGGCTCGGAGGCGGTGGAACCGACCCGGCGGCGAGCGACGGGCTTTG
CGGGTTTGGACGTCGAGGGAGGTGCTGACGGCGCTGGGGACGGGACGAGT
GATGAAGACGAAAAATATAATGAAGGAAGTAGTGGAGATGATGATAGCAA
AGAAGATGATGATAATGAAGAAGAGGATGATAATGATGATGATGACGGTG
ACGATGAGGGCGGCTCGGAGGCGGTGGAACCGACCCGGCGGCGAGCGACG
GGCTTTGCGGGTTTGGACGTCGAGGGAGGTGCTGACGGCGCTGGGGACGG
GACGAGTGATGAAGACGAAAAATATAATGAAGGAAGTAGTGGAGATGATG
ATAGCAAAGAAGATGATGATAATGAAGAAGAGGATGATAATGATGATGAT
GACGGTGACGATGCTGGTAACACCGAAGGCGTAATGGACGCGACAGCATC
TGCAGCGAACAGCGATGAACAGGGAGGGCTGGTAACACCGAAGGCGTAAT
GGACGCGACAGCATCTGCAGCGAACAGCGATGAACAGGGAGGGGTCCGCC
CTGCGCAAGGCTCATCGTCGCCCTCATGGCTGTCGGATCCATCGTACGGC
GCACCTCCTGCCGAGTCCACGGGTCCGCCCTGCGCAAGGCTCATCGTCGC
CCTCATGGCTGTCGGATCCATCGTACGGCGCACCTCCTGCCGAGTCCACG
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