mRNA_P-canaliculata_contig100844.162.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100844.162.1
Unique NamemRNA_P-canaliculata_contig100844.162.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100844.162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100844contigP-canaliculata_contig100844:48..404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.0744023-UTR-P-canaliculata_contig100844:47..531622815582.0744023-UTR-P-canaliculata_contig100844:47..53Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100844 48..53 +
1693494149.5585067-UTR-P-canaliculata_contig100844:47..531693494149.5585067-UTR-P-canaliculata_contig100844:47..53Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100844 48..53 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.0898397-CDS-P-canaliculata_contig100844:53..4041622815582.0898397-CDS-P-canaliculata_contig100844:53..404Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100844 54..404 +
1693494149.571204-CDS-P-canaliculata_contig100844:53..4041693494149.571204-CDS-P-canaliculata_contig100844:53..404Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100844 54..404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100844.162.1prot_P-canaliculata_contig100844.162.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100844 54..404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100844.162.1

>prot_P-canaliculata_contig100844.162.1 ID=prot_P-canaliculata_contig100844.162.1|Name=mRNA_P-canaliculata_contig100844.162.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=117bp
MLRARQALAQSDLTQAESLLKEAAALPANFDELGDSPATIQALVDRQNQL
VGMAEGQHPDYNAGAASFFLVQAEALLYYQDFDGAETLIKHARSFNVQFN
DKIGDPDRLEKLLEISR
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mRNA from alignment at P-canaliculata_contig100844:48..404+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100844.162.1 ID=mRNA_P-canaliculata_contig100844.162.1|Name=mRNA_P-canaliculata_contig100844.162.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at P-canaliculata_contig100844:48..404+ (Pelvetia canaliculata dioecious)
CAAGTGATGTTGCGAGCCCGACAGGCGCTGGCACAAAGTGACTTGACGCA
GGCAGAAAGTCTGCTCAAAGAAGCCGCTGCGTTGCCAGCGAACTTCGATG
AATTGGGCGATTCGCCCGCGACAATTCAAGCACTGGTCGATCGCCAAAAC
CAATTGGTTGGAATGGCCGAAGGTCAGCATCCGGATTACAACGCCGGCGC
AGCATCGTTCTTTTTAGTGCAAGCAGAAGCTCTGCTGTACTACCAAGACT
TCGATGGAGCAGAAACGTTGATCAAACATGCGCGTTCTTTCAACGTGCAA
TTCAATGACAAAATCGGCGATCCTGATCGCCTTGAGAAGTTGTTGGAAAT
CAGCCGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig100844:48..404+

>mRNA_P-canaliculata_contig100844.162.1 ID=mRNA_P-canaliculata_contig100844.162.1|Name=mRNA_P-canaliculata_contig100844.162.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at P-canaliculata_contig100844:48..404+ (Pelvetia canaliculata dioecious)
ATGTTGCGAGCCCGACAGGCGCTGGCACAAAGTGACTTGACGCAGGCAGA
AAGTCTGCTCAAAGAAGCCGCTGCGTTGCCAGCGAACTTCGATGAATTGG
GCGATTCGCCCGCGACAATTCAAGCACTGGTCGATCGCCAAAACCAATTG
GTTGGAATGGCCGAAGGTCAGCATCCGGATTACAACGCCGGCGCAGCATC
GTTCTTTTTAGTGCAAGCAGAAGCTCTGCTGTACTACCAAGACTTCGATG
GAGCAGAAACGTTGATCAAACATGCGCGTTCTTTCAACGTGCAATTCAAT
GACAAAATCGGCGATCCTGATCGCCTTGAGAAGTTGTTGGAAATCAGCCG
CATGTTGCGAGCCCGACAGGCGCTGGCACAAAGTGACTTGACGCAGGCAG
AAAGTCTGCTCAAAGAAGCCGCTGCGTTGCCAGCGAACTTCGATGAATTG
GGCGATTCGCCCGCGACAATTCAAGCACTGGTCGATCGCCAAAACCAATT
GGTTGGAATGGCCGAAGGTCAGCATCCGGATTACAACGCCGGCGCAGCAT
CGTTCTTTTTAGTGCAAGCAGAAGCTCTGCTGTACTACCAAGACTTCGAT
GGAGCAGAAACGTTGATCAAACATGCGCGTTCTTTCAACGTGCAATTCAA
TGACAAAATCGGCGATCCTGATCGCCTTGAGAAGTTGTTGGAAATCAGCC
GC
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