mRNA_P-canaliculata_contig1008.155.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig1008.155.1
Unique NamemRNA_P-canaliculata_contig1008.155.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig1008.155.1 vs. uniprot
Match: D8LD78_ECTSI (Acyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD78_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.960e-39
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 1
Query:    1 LQELFLSSTLEERLYVGKRKGFIKLAMRTGNEVIPCYYFGNTVALEIVRHPILTSLSRKLGVSLTLLWGRWGLPVPMPRKVM 246
            + ELFLS+  EERLYVGKRKGFIKLAM+TG+EVIPCYYFGNT  LEI+RHP+LTS+SRKLG S+T+LWGRWGLP+PMP K M
Sbjct:  181 IAELFLSNPAEERLYVGKRKGFIKLAMQTGSEVIPCYYFGNTTCLEILRHPVLTSVSRKLGASITILWGRWGLPIPMPGKSM 262          
BLAST of mRNA_P-canaliculata_contig1008.155.1 vs. uniprot
Match: A0A835YX01_9STRA (Acyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX01_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.500e-28
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 1
Query:    1 LQELFLSSTLEERLYVGKRKGFIKLAMRTGNEVIPCYYFGNTVALEIVRHPILTSLSRKLGVSLTLLWGRWGLPVPMPRKVM 246
            + ELFLS   EERL++ KR GF+KLAM+TG++VIP Y FGNT  L + R   L +LSR LGVS+TLLWGRWGLP+PMPRK+M
Sbjct:  202 MAELFLSHPSEERLFIAKRTGFLKLAMQTGSDVIPWYLFGNTSTLVVARGSFLMALSRTLGVSITLLWGRWGLPLPMPRKIM 283          
BLAST of mRNA_P-canaliculata_contig1008.155.1 vs. uniprot
Match: A0A7S2K2P5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2P5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.140e-26
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 LQELFLSSTLEERLYVGKRKGFIKLAMRTGNEVIPCYYFGNTVALEIVRHPILTSLSRKLGVSLTLLWGRWGLPVPMPRKVM 246
            + ELF SS  EERLY+ KRKGFIKLA+R G EV P Y+FGNT AL I++  +LT LSRKL +S+T++WGR+GLP+P   K+M
Sbjct:   18 MAELFQSSRDEERLYLSKRKGFIKLALREGVEVCPVYFFGNTSALSILKGSLLTYLSRKLQISVTIIWGRFGLPIPRDDKIM 99          
BLAST of mRNA_P-canaliculata_contig1008.155.1 vs. uniprot
Match: A0A7S4FD25_CHRCT (Acyltransferase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FD25_CHRCT)

HSP 1 Score: 108 bits (270), Expect = 1.740e-26
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 LQELFLSSTLEERLYVGKRKGFIKLAMRTGNEVIPCYYFGNTVALEIVRHPILTSLSRKLGVSLTLLWGRWGLPVPMPRKVM 246
            + ELF SS+  E +Y+ KRKGFIKLA+RTG +VIP Y+FGNT  L +++   L +LSRKLGVS+TL WGRWGLPVP P K++
Sbjct:  231 IAELFASSSQREAVYLNKRKGFIKLALRTGGDVIPAYFFGNTTVLSVLKAGPLAALSRKLGVSVTLFWGRWGLPVPKPVKLV 312          
BLAST of mRNA_P-canaliculata_contig1008.155.1 vs. uniprot
Match: A0A7S2W5Y2_9STRA (Acyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W5Y2_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.970e-24
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 LQELFLSSTLEERLYVGKRKGFIKLAMRTGNEVIPCYYFGNTVALEIVRHPILTSLSRKLGVSLTLLWGRWGLPVPMPRKVM 246
            + ELFL S  EE++    RKGFIK+AM+ G +++P Y  GNT  L++VRHPIL+ +SRKLG ++TL WGRWGLP+P+PR V+
Sbjct:  210 IAELFLCSPTEEKVLA--RKGFIKVAMQAGADIVPVYLLGNTTVLQVVRHPILSFISRKLGATITLFWGRWGLPLPLPRPVV 289          
BLAST of mRNA_P-canaliculata_contig1008.155.1 vs. uniprot
Match: A0A7S0AX97_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AX97_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.280e-23
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 LQELFLSSTLEERLYVGKRKGFIKLAMRTGNEVIPCYYFGNTVALEIVRHPILTSLSRKLGVSLTLLWGRWGLPVPMPRKVM 246
            + ELF S   EERLY+ KRKGFIK+A+R G +++PC+ FGNTV L +++H  L +LSRKLG S+T +WG+  LP+P    +M
Sbjct:   11 IAELFKSCLEEERLYLSKRKGFIKIALREGADILPCFMFGNTVVLSVLKHGPLANLSRKLGASVTYMWGKAYLPIPRDEMLM 92          
BLAST of mRNA_P-canaliculata_contig1008.155.1 vs. uniprot
Match: A0A7S1GMT6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GMT6_CYCTE)

HSP 1 Score: 95.9 bits (237), Expect = 3.850e-23
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 LQELFLSSTLEERLYVGKRKGFIKLAMRTGNEVIPCYYFGNTVALEIVRHPILTSLSRKLGVSLTLLWGRWGLPVPMPRKVM 246
            + ELF SS  EERL++ KRKGFIKLA+R G ++ P Y FGNT AL I ++  L SLSR LGV+LT  WG+W LP+P   K++
Sbjct:   45 IAELFKSSRTEERLFLSKRKGFIKLALREGVDICPAYLFGNTSALTIFKYGPLASLSRSLGVALTYFWGKWYLPIPCDDKML 126          
BLAST of mRNA_P-canaliculata_contig1008.155.1 vs. uniprot
Match: A0A7S1VDB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VDB6_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 7.330e-23
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 LQELFLSSTLEERLYVGKRKGFIKLAMRTGNEVIPCYYFGNTVALEIVRHPILTSLSRKLGVSLTLLWGRWGLPVPMPRKVM 246
            L ELF SS  EER+++ KRKGFIKLA+R G +++P Y FGNT  L + RH  L SLSR LGV+LT  WG+W LP+P    ++
Sbjct:  191 LAELFRSSPTEERVFLSKRKGFIKLALREGVDIVPVYLFGNTTVLTVFRHGPLASLSRNLGVALTYFWGKWYLPIPRDEPLL 272          
BLAST of mRNA_P-canaliculata_contig1008.155.1 vs. uniprot
Match: A0A7R9YEL6_9STRA (Acyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEL6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.960e-22
Identity = 42/82 (51.22%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 LQELFLSSTLEERLYVGKRKGFIKLAMRTGNEVIPCYYFGNTVALEIVRHPILTSLSRKLGVSLTLLWGRWGLPVPMPRKVM 246
            + ELFL +  EE+L++ +RKGFIKLA+R+  EV+P + FGNT  L   +HP+L  LSR L +S+T +WGRWGLPVP+ ++++
Sbjct:  186 IAELFLCTPEEEKLFLMQRKGFIKLALRSNAEVVPVFLFGNTEVLHAFKHPVLEQLSRSLQMSMTWIWGRWGLPVPLQKQIV 267          
BLAST of mRNA_P-canaliculata_contig1008.155.1 vs. uniprot
Match: A0A7S3TR42_9SPIT (Acyltransferase n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TR42_9SPIT)

HSP 1 Score: 95.9 bits (237), Expect = 7.340e-22
Identity = 45/82 (54.88%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 LQELFLSSTLEERLYVGKRKGFIKLAMRTGNEVIPCYYFGNTVALEIVRHPILTSLSRKLGVSLTLLWGRWGLPVPMPRKVM 246
            + ELF +S   E  Y+ +RKGFIKLAMRTG +V+P Y+FGNT  L ++    L +LSRKLG+S+TL WG WGLP+P P K++
Sbjct:  203 IAELFETSAKRECCYLLQRKGFIKLAMRTGADVVPAYFFGNTAVLSVLSTGPLATLSRKLGMSVTLTWGLWGLPIPKPVKLI 284          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1008.155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD78_ECTSI1.960e-3978.05Acyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A835YX01_9STRA1.500e-2864.63Acyltransferase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S2K2P5_9STRA1.140e-2660.98Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S4FD25_CHRCT1.740e-2660.98Acyltransferase n=1 Tax=Chrysotila carterae TaxID=... [more]
A0A7S2W5Y2_9STRA1.970e-2456.10Acyltransferase n=1 Tax=Rhizochromulina marina Tax... [more]
A0A7S0AX97_9STRA2.280e-2352.44Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1GMT6_CYCTE3.850e-2356.10Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1VDB6_9STRA7.330e-2354.88Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7R9YEL6_9STRA2.960e-2251.22Acyltransferase n=1 Tax=Pinguiococcus pyrenoidosus... [more]
A0A7S3TR42_9SPIT7.340e-2254.88Acyltransferase n=1 Tax=Strombidinopsis acuminata ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig1008contigP-canaliculata_contig1008:10077..11209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue5.1e-32
Seed eggNOG ortholog2880.D8LD78
EggNOG free text desc.2-acylglycerol O-acyltransferase activity
EggNOG OGsKOG0831@1,KOG0831@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionmono-or diacylglycerol acyltransferase type 2
Ec32 orthologEc-05_001450.1
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.7227912-CDS-P-canaliculata_contig1008:10076..102141622815581.7227912-CDS-P-canaliculata_contig1008:10076..10214Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1008 10077..10214 +
1693494149.4509592-CDS-P-canaliculata_contig1008:10076..102141693494149.4509592-CDS-P-canaliculata_contig1008:10076..10214Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1008 10077..10214 +
1622815581.7336676-CDS-P-canaliculata_contig1008:11101..112091622815581.7336676-CDS-P-canaliculata_contig1008:11101..11209Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1008 11102..11209 +
1693494149.4601107-CDS-P-canaliculata_contig1008:11101..112091693494149.4601107-CDS-P-canaliculata_contig1008:11101..11209Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1008 11102..11209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig1008.155.1prot_P-canaliculata_contig1008.155.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig1008 10077..11209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig1008.155.1

>prot_P-canaliculata_contig1008.155.1 ID=prot_P-canaliculata_contig1008.155.1|Name=mRNA_P-canaliculata_contig1008.155.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=82bp
LQELFLSSTLEERLYVGKRKGFIKLAMRTGNEVIPCYYFGNTVALEIVRH
PILTSLSRKLGVSLTLLWGRWGLPVPMPRKVM
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mRNA from alignment at P-canaliculata_contig1008:10077..11209+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig1008.155.1 ID=mRNA_P-canaliculata_contig1008.155.1|Name=mRNA_P-canaliculata_contig1008.155.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1133bp|location=Sequence derived from alignment at P-canaliculata_contig1008:10077..11209+ (Pelvetia canaliculata dioecious)
CTTCAGGAGCTCTTTCTGTCCAGTACCTTGGAGGAGCGTCTGTACGTGGG GAAGAGAAAGGGCTTCATCAAGCTCGCCATGCGCACGGGGAACGAGGTCA TCCCCTGCTACTACTTCGGAAATACTGTGGCGTTAGAGGTGCGGGCGATG GCTTCTGTTAGAGGGTGTGGTGATTACGGGCAGGCCCCGTGAGTTCGTTT TTTCATGTAACAGCGTGTTTTGACGAGTGACAGGCTCAACAGCTCAGTTT ACACTGATTACATGCGAAGTCATCTATGAGCAGTGTAGGAAGAAAGGTGT GCGAAGAAGTTTGATCTACACGCCAGGTTACCGGTCCGACCTATCGCTAC GGTGCCGATCCTTCCTGCGATCCCGCGGAAGCTCAAGCCCCCCGCCTTGT CTTGTCCGGGTTACGATTTCATGCTTCTTTGTCGCGATGGAAAGCTCAGC CCCCGTGCACCTCTTTCGACCAATGGCTAAGCTTTGCTCGCTCACGTTTT CACAAACTCACAATTTCACGCCCTCAACTCGAGTTCTCGCGTTTTTGCGC TGCAAGAACAAGCAGTCCTCGAGCACGCACTTCCCGCCCGCCGTTAAAAA AAAGTTCGAGCTCTTGGGAGAACTTCAGGACAAAGGGACGTGCAGACTAC GCCTCATATTCTTGTATTGCGGCGTTTTCGATTGGTCGAAGGATAAGAGG CTATTAATAGCTATACCCCGTACTATCAGACACGGAGGTTATACTGACTC AAGATCACGAGGAATCTAAAAATATATATAACACTGTTCTACTTAGACTA AAGTCCGAAGTAATTACAGCAGTTTCGTGTCGAAAGTCGTGTCTTAACCC GCTCTAGTCATCAGCCGTAGCTTCAGCCGTAAACTTTGATTTATGATGGT CCTGGCTATCGACCCATCTCAACCCGTCTCCTGCCCCGCACCCCCCCCCA CCCTCCTGTGCACCACCGCTTTTTTTGGCCATTTTTGGCTTGGGGTCGTT GCTGTCCTTGTGTTGACGATCTCAGATTGTCCGGCATCCAATTTTGACCA GTCTCAGCCGCAAGCTGGGCGTGAGCTTGACCCTTCTGTGGGGCAGATGG GGGCTGCCTGTTCCGATGCCCCGCAAGGTAATG
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Coding sequence (CDS) from alignment at P-canaliculata_contig1008:10077..11209+

>mRNA_P-canaliculata_contig1008.155.1 ID=mRNA_P-canaliculata_contig1008.155.1|Name=mRNA_P-canaliculata_contig1008.155.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at P-canaliculata_contig1008:10077..11209+ (Pelvetia canaliculata dioecious)
CTTCAGGAGCTCTTTCTGTCCAGTACCTTGGAGGAGCGTCTGTACGTGGG
GAAGAGAAAGGGCTTCATCAAGCTCGCCATGCGCACGGGGAACGAGGTCA
TCCCCTGCTACTACTTCGGAAATACTGTGGCGTTAGAGCTTCAGGAGCTC
TTTCTGTCCAGTACCTTGGAGGAGCGTCTGTACGTGGGGAAGAGAAAGGG
CTTCATCAAGCTCGCCATGCGCACGGGGAACGAGGTCATCCCCTGCTACT
ACTTCGGAAATACTGTGGCGTTAGAGATTGTCCGGCATCCAATTTTGACC
AGTCTCAGCCGCAAGCTGGGCGTGAGCTTGACCCTTCTGTGGGGCAGATG
GGGGCTGCCTGTTCCGATGCCCCGCAAGGTAATGATTGTCCGGCATCCAA
TTTTGACCAGTCTCAGCCGCAAGCTGGGCGTGAGCTTGACCCTTCTGTGG
GGCAGATGGGGGCTGCCTGTTCCGATGCCCCGCAAGGTAATG
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