prot_P-canaliculata_contig100690.144.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig100690.144.1
Unique Nameprot_P-canaliculata_contig100690.144.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length76
Homology
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BLAST of mRNA_P-canaliculata_contig100690.144.1 vs. uniprot
Match: A0A848UJ31_9GAMM (Uncharacterized protein n=2 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848UJ31_9GAMM)

HSP 1 Score: 100 bits (250), Expect = 3.340e-26
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 0 
Query:   12 ISSVTFAQQP--APDCQCRAPGGLMKDLGTVACFNIVGNNRMVRCEMSTNTPYWKELEGVAGCPDA 75
            +S++ + Q P  APDC+CRAP G M+DLGTV C +IVG  ++VRCEMSTNTPYWK+++GV GCPDA
Sbjct:   30 VSALVWGQDPPVAPDCKCRAPDGQMRDLGTVQCVDIVGTRKLVRCEMSTNTPYWKKVDGVEGCPDA 95
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BLAST of mRNA_P-canaliculata_contig100690.144.1 vs. uniprot
Match: A0A1L9NUX6_9RHOB (Uncharacterized protein n=1 Tax=Planktotalea frisia TaxID=696762 RepID=A0A1L9NUX6_9RHOB)

HSP 1 Score: 50.1 bits (118), Expect = 3.530e-6
Identity = 22/62 (35.48%), Postives = 32/62 (51.61%), Query Frame = 0 
Query:   11 SISSVTFAQQPAPDCQCRAPGGLMKDLGTVACFNIVGNNRMVRCEMSTNTPYWKELEGVAGC 72
            S + VT       +C C   GGL  +LG + C  + G   M +C+MS N+P W+E+    GC
Sbjct:   16 SFADVTSPSGKTVECYCTDKGGLRIELGQMTCLQVDGRMFMAQCQMSLNSPMWREV--APGC 75
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BLAST of mRNA_P-canaliculata_contig100690.144.1 vs. uniprot
Match: UPI001CD32B46 (hypothetical protein n=1 Tax=Cognatishimia sp. MH4019 TaxID=2854030 RepID=UPI001CD32B46)

HSP 1 Score: 47.0 bits (110), Expect = 5.530e-5
Identity = 19/49 (38.78%), Postives = 28/49 (57.14%), Query Frame = 0 
Query:   24 DCQCRAPGGLMKDLGTVACFNIVGNNRMVRCEMSTNTPYWKELEGVAGC 72
            DC C   GG   +LG + C N+ G     +C+MS N+P W+E++   GC
Sbjct:   27 DCYCTDQGGERIELGEMICLNVGGRMFTAQCQMSLNSPMWREVQN--GC 73
[Close]
BLAST of mRNA_P-canaliculata_contig100690.144.1 vs. uniprot
Match: UPI001FEB0642 (hypothetical protein n=1 Tax=Planktotalea arctica TaxID=1481893 RepID=UPI001FEB0642)

HSP 1 Score: 46.6 bits (109), Expect = 7.990e-5
Identity = 24/76 (31.58%), Postives = 37/76 (48.68%), Query Frame = 0 
Query:    2 RRLLLILLISISSVTFAQQPAP-----DCQCRAPGGLMKDLGTVACFNIVGNNRMVRCEMSTNTPYWKELEGVAGC 72
            R++L  LL +   +  A   +P     DC C    G   +LG + C  + G   M +C+MS N+P W+E+    GC
Sbjct:    2 RKVLTFLLCAAPMIAGADVTSPSGRTVDCYCTDKSGARLELGQMTCIQVDGRMFMAQCQMSLNSPMWREIS--KGC 75
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100690.144.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A848UJ31_9GAMM3.340e-2663.64Uncharacterized protein n=2 Tax=Granulosicoccus sp... [more]
A0A1L9NUX6_9RHOB3.530e-635.48Uncharacterized protein n=1 Tax=Planktotalea frisi... [more]
UPI001CD32B465.530e-538.78hypothetical protein n=1 Tax=Cognatishimia sp. MH4... [more]
UPI001FEB06427.990e-531.58hypothetical protein n=1 Tax=Planktotalea arctica ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..75
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.898

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100690contigP-canaliculata_contig100690:182..409 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100690.144.1mRNA_P-canaliculata_contig100690.144.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig100690 182..409 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig100690.144.1 ID=prot_P-canaliculata_contig100690.144.1|Name=mRNA_P-canaliculata_contig100690.144.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=76bp
VRRLLLILLISISSVTFAQQPAPDCQCRAPGGLMKDLGTVACFNIVGNNR
MVRCEMSTNTPYWKELEGVAGCPDA*
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