mRNA_P-canaliculata_contig100535.118.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100535.118.1
Unique NamemRNA_P-canaliculata_contig100535.118.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A7S4IKG1_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IKG1_9EUKA)

HSP 1 Score: 196 bits (499), Expect = 7.660e-58
Identity = 109/235 (46.38%), Postives = 134/235 (57.02%), Query Frame = 3
Query:  138 GDCCDRGPDTKGVIDWLIELRDQRVPDTTRFLAGNHDFGMACFLQCPPLASP--PPTEWLDKTLNPSFHRDFYKPTVAGAMHYQGRRWAGSTKYNADTTFKSYGLSFSPRY----------PKTHKSFLQELEWAVDLPTSFPPGRVTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPEL-----DGKAILVSGHHSMYYNLGDRYIIDASGG 791
            GD CDRGPDT+GV+DWL++LRD R   TT FLAGNHDFG A F+   P+  P  PP + L+ T NP F   ++   V G MHYQGRRWA    YN+D+ F SYG+ F   +          P +HK FLQ + W  +   ++  GRV  VHAG N   PL  Q+A L AR+  A  L A +D  R  A   R+   PMHPEL     +  + LVSGHH      G R IIDASGG
Sbjct:   51 GDYCDRGPDTRGVLDWLVQLRDGRAAGTTHFLAGNHDFGFAAFIGMLPIDKPHQPPLD-LETTKNPRFTSGYWPYPVVGGMHYQGRRWAEGYTYNSDSAFASYGVQFDGSFEMRDRLIKAVPHSHKDFLQRMLWVHEADRTW--GRVVCVHAGLNCESPLAPQLAALKARDLSASCLFAGSDSGRIAAMSERRSVEPMHPELTSLEGERPSWLVSGHHGFTSLEGKRLIIDASGG 282          
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A7S3PJB6_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PJB6_9STRA)

HSP 1 Score: 192 bits (487), Expect = 3.660e-55
Identity = 104/233 (44.64%), Postives = 130/233 (55.79%), Query Frame = 3
Query:  138 GDCCDRGPDTKGVIDWLIELRDQRVPDTTR----FLAGNHDFGMACFLQCPPLASPPPTEWLDKTLNPSFHRDFYKPTVAGAMHYQGRRWAGSTKYNADTTFKSYGLSFSPR-----------YPKTHKSFLQELEWAVDLPTSFPPGRVTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPELDGKAILVSGHHSMYYNLGDRYIIDASGG 791
            GD CDRGP+TKGV+DWL++ +++R+ D T+    F+ GNHDFGMA FL   P+    P + LDKT  P +   ++K  V G MHYQGRRW GS  Y A  TF+SY + F               P+ HK FL  LEW VD P SF PGRV  VHAG         QI  L  R+     L+ + D  R  AF GR+    M  EL GKA+L+SGHH       DR ++D SGG
Sbjct:   58 GDYCDRGPNTKGVLDWLVDFKNERLHDPTKGDVHFVCGNHDFGMASFLGSLPIDGKSPID-LDKTRKPDYTDGYWKHDVEGGMHYQGRRWGGSHIYQAQQTFESYHVKFDRHSRSARDELVAAVPEAHKDFLSSLEWVVDFPVSFEPGRVVCVHAGLEKKH-AEEQIEALAKRDLSKSILLENRDPGRFSAFSGRRNVLDMPRELKGKALLISGHHGFNRIKKDRIVLDLSGG 288          
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A7S2FJ62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJ62_9STRA)

HSP 1 Score: 177 bits (449), Expect = 8.400e-50
Identity = 104/235 (44.26%), Postives = 132/235 (56.17%), Query Frame = 3
Query:  138 GDCCDRGPDTKGVIDWLIELRDQRVPDT----TRFLAGNHDFGMACFLQCPPL-ASPPPTEWLDKTLNPSFHRDFYKPTVAGAMHYQGRRWAGSTKYNADTTFKSYGLSFSP-----------RYPKTHKSFLQELEWAVDLPTSFPPGRVTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPELDGKAILVSGHH-SMYYNLGDRYIIDASGG 791
            GD  DRGPD++GVID+L+ LR  R  +     T F+AGNHD GMA F+  P    +    E L+ T N ++ + F+   V G MHYQGRRW GST YN  T F SYG   +              P  HK FLQ L+   D P  F PGR+  VHAG +   P   Q+ +L AR+  +P++   +D SR  A H R    PMH +L GKAI+VSGHH +M  N GDR I+D SGG
Sbjct:   96 GDYVDRGPDSRGVIDFLVGLRAARAVEDGTGGTYFIAGNHDLGMATFIGVPCCDEASVSAEALEATRNVAYKKGFFVHPVEGGMHYQGRRWGGSTVYNCHTCFSSYGAGDADYTAESRERLVKAVPDAHKEFLQGLDLCHDAPIPFGPGRLICVHAGLSPDVPAEEQLERLRARDILSPSIQHPDDASRIPALHSRGAVIPMHHDLVGKAIVVSGHHGTMDVNRGDRIIMDLSGG 330          
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A7S3ARZ9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ARZ9_9EUKA)

HSP 1 Score: 161 bits (407), Expect = 2.150e-43
Identity = 101/260 (38.85%), Postives = 131/260 (50.38%), Query Frame = 3
Query:  138 GDCCDRGPDTKGVIDWLIELRDQRVPDTTRFLAGNHDFGMACFLQCPPLASPPPTEWLDKTLNPSFHRD------FYKPTVAGAMHYQGRRWAGSTKYNADTTFKSYGLSFSPRY---------------------------PKTHKSFLQELEWAVDLPTSFPPGRVT---AVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSI------AFHGRQLARPMHPELDGKAILVSGHHSMYYNLGDRYIIDASGG 791
            GD CDRGPDTKGVIDWLIELR +       F+AGNHDFG A FL C P   P P + LD T +P ++ D      F+   VAG MHYQGRRWA    Y +  TF+SYG+ F                               P++H++FL +LEW  + P +   G ++    VHAG + ++PL  Q+  L  R+   P L A   +   +      AF GR    P HPE     + VSGHH +    G+R I+D SGG
Sbjct:  104 GDYCDRGPDTKGVIDWLIELR-RTHSAPVHFIAGNHDFGFAAFLGCLP---PSPVD-LDATKSPKYNTDLDDPKGFWPHPVAGGMHYQGRRWAEGKVYPSVATFRSYGVDFEVEQIVKDGQVEHELFRRLPAAMRPQLLAAVPESHRTFLAQLEWLHEQPVTGWGGGISELICVHAGLDGSKPLAPQLRALRQRDLTDPILYAPPRLGEPVVLDRIEAFSGRTELFPSHPENADTCVQVSGHHGVSMESGNRIILDRSGG 358          
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A7S1AHB2_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AHB2_NOCSC)

HSP 1 Score: 157 bits (396), Expect = 1.250e-42
Identity = 98/240 (40.83%), Postives = 123/240 (51.25%), Query Frame = 3
Query:  138 GDCCDRGPDTKGVIDWLIELRDQRVPDT---TRFLAGNHDFGMACFLQCPPLASPPPT--------EWLDKTLNPSFHRDFYKPTVAGAMHYQGRRWAGSTKYNADTTFKSYGLSFS----------PRYPKTHKSFLQELEWAVDLPTSFPPGRVTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPELDGKAILVSGHHSMYYNLGD-RYIIDASGG 791
            GD  DRGPDTKGV+D+L+ L+  R       T FLAGNHDF  A ++     A PPP+         +L     P    + +   V G MH+QGRRW     Y+   TFKSYG+ F+                HK FL  L +  D P  FPPGR+ AVHAG +T  P   QI  LLA +     L    D  R      R+L   MHP+L G+AILVSGHHSM     + R+IID++GG
Sbjct:   58 GDYNDRGPDTKGVLDFLVALKKWRAVHAQGETVFLAGNHDFAFAAYIG----ALPPPSVDDEVFEIAFLCGENEPYEEGELFSFEVEGGMHHQGRRWGAGDTYSNKATFKSYGVDFALTKECRQSLIDAVAPEHKEFLNSLVYCYDTPVPFPPGRLVAVHAGLDTRHPAEPQIQALLALDLYGETLTPFGDGRRITPISERELVWHMHPDLMGRAILVSGHHSMRATPSEHRHIIDSTGG 293          
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A5J9TTE9_9POAL (Metallophos domain-containing protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TTE9_9POAL)

HSP 1 Score: 118 bits (295), Expect = 6.370e-28
Identity = 84/249 (33.73%), Postives = 117/249 (46.99%), Query Frame = 3
Query:  138 GDCCDRGPDTKGVIDWLIELRDQRVPDTTRFLAGNHDFGMACF---LQCPPLASPPPTEWLDKTLNPSFHRDFYKPTVAGAMHYQGRRWAGSTK---------------YNADTTFKSYGLS-----FSPRYPKTHKSFLQELEWAVD---LPTSFPPG----RVTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPELDGK-AILVSGHHSMYYNLGDRYIIDASGG 791
            GD CDRGP T+GV+D+L+ L  +       FL GNHDF  A F   L  PP  SP    W D+ L+   H  +++      MH QGRRW G+                 Y+A  TF+SYG++      +   P+ HK FL +L W  +   +P     G    ++ AVHAG   +  L  Q+  L  R         D+ + +    HGRQ    +  +L GK  ++VSGHH   +  G R+IID  GG
Sbjct:   50 GDYCDRGPSTRGVLDFLLALPARYPSQRHVFLCGNHDFAFAAFVGALPPPPDGSPFSVTW-DEYLHNEEHEGWFRGPGHEGMHVQGRRWGGAINEGWNPKKGLPYKGSIYDAQPTFESYGVAHGSPDLAKAVPEDHKRFLHDLVWIHEEENVPIDTDEGQTVCKLIAVHAGLGRSTDLNEQLRVLRTR---------DSRVPKVQMLHGRQDVWDIPKDLSGKQTVIVSGHHGKLHIDGLRFIIDEGGG 288          
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A1U7Z9Y6_NELNU (uncharacterized protein LOC104587886 isoform X1 n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7Z9Y6_NELNU)

HSP 1 Score: 113 bits (282), Expect = 4.360e-26
Identity = 85/244 (34.84%), Postives = 111/244 (45.49%), Query Frame = 3
Query:  108 SFRIGGCRLFGDCCDRGPDTKGVIDWLIELRDQRVPDTTRFLAGNHDFGMACFLQCPPLASPPPTEWLDKTLNPSFHRD----FYKPTVAGAMHYQGRRWAGSTKYNADTTFKSYGLSFSPR-----YPKTHKSFLQELEWAV---DLPTSFPPGR----VTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPELDGKAILVSGHHSMYYNLGDRYIIDASGG 791
            SF+       GD CD+GPDT+ VID+LI L  +    T  FL+GNHD G A F+    L  PP      +T   S        +YK      MH QGR W G    NA +TF+SYG+ +         P+ HK FL +L W     D+      GR    + AVHAG   T+ +  Q+  L AR+   P ++A    S  +      +  P         +LVSGHH      G R IID SGG
Sbjct:   47 SFQTALIIFLGDYCDKGPDTRSVIDFLISLPSRYPKQTHVFLSGNHDLGFAAFIGV--LPPPPDGSTFAETWKGSEQYGEKVGWYKGAGYENMHLQGRLWGGPVDSNAASTFQSYGIPYGSTDLVKAVPEEHKKFLADLVWVHEEDDVCIETSEGRKHYKLIAVHAGLEKTKGVQEQLKLLRARDTSQPMIVALTGRSNVLDIPQELVDCPT------PTMLVSGHHGKLELNGLRLIIDESGG 282          
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: M4ELY9_BRARP (Metallophos domain-containing protein n=7 Tax=Brassica TaxID=3705 RepID=M4ELY9_BRARP)

HSP 1 Score: 112 bits (281), Expect = 6.820e-26
Identity = 88/250 (35.20%), Postives = 113/250 (45.20%), Query Frame = 3
Query:  138 GDCCDRGPDTKGVIDWLIELRDQRVPDTTRFLAGNHDFGMACFLQCPPL---ASPPPTEWLDKTLNPSFHRD-FYKPTVAGAMHYQGRRWAGSTK---------------YNADTTFKSYGL-----SFSPRYPKTHKSFLQELEWA-------VDLPTSFPPGRVTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPELDGK-AILVSGHHSMYYNLGDRYIIDASGG 791
            GD CDRGP+T+ VID+LI L ++    T  FLAGNHDF  A FL   P     S     W  +    S  R+ +YK      MH QGRRWAG  K               Y+A TTF+SYG+           P++HK FL  + W        V+        ++ AVHAG      +  Q+  L A+         D  IS+     GR+    +  ELD K  +LVSGHH   +  G R IID  GG
Sbjct:   46 GDYCDRGPETRKVIDFLISLPEKHPEQTHVFLAGNHDFAFAAFLGLLPRPWDGSELKETW--REYEESEEREGWYKGEGFEEMHLQGRRWAGKIKAQFNSVKGMAYKGSIYDAGTTFESYGVPHGSSDLMKAVPESHKKFLTNMVWVHEEDDVCVETEEGVKRCKLIAVHAGLEKGDSVEEQLKLLRAK---------DTSISKVPYLSGRRNVWDIPQELDDKETVLVSGHHGKLHMDGLRLIIDEGGG 284          
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A7I8L6H4_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L6H4_SPIIN)

HSP 1 Score: 112 bits (281), Expect = 8.050e-26
Identity = 88/279 (31.54%), Postives = 123/279 (44.09%), Query Frame = 3
Query:   72 LVMAYSGKQIR---RSFRIGGCRLFGDCCDRGPDTKGVIDWLIELRDQRVPDTTRFLAGNHDFGMACFLQCPPLASPPPTE-------WLDKTLNPSFHRDFYKPTVAGAMHYQGRRWAGSTK---------------YNADTTFKSYG-----LSFSPRYPKTHKSFLQELEWAV---DLPTSFPPGRVT----AVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPELDGKA--ILVSGHHSMYYNLGDRYIIDASGG 791
            L+  ++  ++R    +FR       GD CDRGP T+ VID+L+ L  +       FL GNHD   + F+     A PPP +       W +   N      ++K      MH QGRRW G  +               Y+A  TF+SYG     +  +   P+ HK FL  L W     D+    P GR+     AVHAG    +P+  Q+  L +R         D  IS+  A  GRQ    +  EL G+   I+VSGHH   +  G R+I+D  GG
Sbjct:   33 LLRLWANLELRVGGAAFRTALVIFLGDYCDRGPQTREVIDFLLSLPSRYPEQRHVFLCGNHDLAFSAFVG----ALPPPHDGSTFSETWAEYEANEE-REGWFKGEGYEGMHLQGRRWGGVIRDRWNSKRGTEYLGSIYDAGPTFQSYGVPHGSIELTKAVPEEHKKFLSTLVWIHEEDDVGLDAPEGRLCCKLIAVHAGLERGKPVEQQLRTLRSR---------DTSISKVEALSGRQNVWNIPKELSGETPTIIVSGHHGKLHLEGLRFIVDEGGG 297          
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A087H884_ARAAL (Metallophos domain-containing protein n=2 Tax=Arabis TaxID=50451 RepID=A0A087H884_ARAAL)

HSP 1 Score: 112 bits (279), Expect = 1.330e-25
Identity = 84/248 (33.87%), Postives = 114/248 (45.97%), Query Frame = 3
Query:  138 GDCCDRGPDTKGVIDWLIELRDQRVPDTTRFLAGNHDFGMACFLQC--PPLASPPPTEWLDKTLNPSFHRDFYKPTVAGAMHYQGRRWAGSTK---------------YNADTTFKSYGLSFSPR-----YPKTHKSFLQELEWA-------VDLPTSFPPGRVTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPELDGKAI-LVSGHHSMYYNLGDRYIIDASGG 791
            GD CDRGP+TK VID+LI L ++    T  FLAGNHDF  A FL     PL      +  ++         +YK      MH QGRRWAG+ K               Y+A +TF+SYG+           P++HK FL ++ W        ++        ++ AVHAG    + +  Q+  L  +         D  IS+     GR+    +  ELD K I +VSGHH   +  G R IID SGG
Sbjct:   46 GDYCDRGPETKKVIDFLISLPEKHPDQTHVFLAGNHDFAFAGFLGLLPRPLDGSDMKDTWNEFEKSEEREGWYKGEGFEDMHLQGRRWAGTIKAQFDSKIGVVYNGSIYDAGSTFESYGVPHGSSDLMKVVPESHKKFLTDMVWVHEEEDVCIETEKGLKQCKLIAVHAGLEKGKSVNEQLELLRGK---------DTSISKIQPLSGRKNVWNIPQELDDKQIVIVSGHHGKLHIDGLRLIIDESGG 284          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IKG1_9EUKA7.660e-5846.38Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S3PJB6_9STRA3.660e-5544.64Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2FJ62_9STRA8.400e-5044.26Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3ARZ9_9EUKA2.150e-4338.85Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S1AHB2_NOCSC1.250e-4240.83Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A5J9TTE9_9POAL6.370e-2833.73Metallophos domain-containing protein n=1 Tax=Erag... [more]
A0A1U7Z9Y6_NELNU4.360e-2634.84uncharacterized protein LOC104587886 isoform X1 n=... [more]
M4ELY9_BRARP6.820e-2635.20Metallophos domain-containing protein n=7 Tax=Bras... [more]
A0A7I8L6H4_SPIIN8.050e-2631.54Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A087H884_ARAAL1.330e-2533.87Metallophos domain-containing protein n=2 Tax=Arab... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100535contigP-canaliculata_contig100535:50..877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue3.6e-38
Seed eggNOG ortholog227086.JGI_V11_87196
EggNOG free text desc.cysteine biosynthetic process from serine
EggNOG OGsCOG0031@1,COG0639@1,COG0695@1,KOG0374@2759,KOG1252@2759,KOG1752@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size791
Cds size714
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100535.118.1prot_P-canaliculata_contig100535.118.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100535 50..800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.1142042-CDS-P-canaliculata_contig100535:49..3851622815579.1142042-CDS-P-canaliculata_contig100535:49..385Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100535 50..385 -
1693494148.1632195-CDS-P-canaliculata_contig100535:49..3851693494148.1632195-CDS-P-canaliculata_contig100535:49..385Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100535 50..385 -
1622815579.1261318-CDS-P-canaliculata_contig100535:422..8001622815579.1261318-CDS-P-canaliculata_contig100535:422..800Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100535 423..800 -
1693494148.1828966-CDS-P-canaliculata_contig100535:422..8001693494148.1828966-CDS-P-canaliculata_contig100535:422..800Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100535 423..800 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.138202-UTR-P-canaliculata_contig100535:800..8771622815579.138202-UTR-P-canaliculata_contig100535:800..877Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100535 801..877 -
1693494148.192221-UTR-P-canaliculata_contig100535:800..8771693494148.192221-UTR-P-canaliculata_contig100535:800..877Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100535 801..877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100535.118.1

>prot_P-canaliculata_contig100535.118.1 ID=prot_P-canaliculata_contig100535.118.1|Name=mRNA_P-canaliculata_contig100535.118.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=238bp
MAYSGKQIRRSFRIGGCRLFGDCCDRGPDTKGVIDWLIELRDQRVPDTTR
FLAGNHDFGMACFLQCPPLASPPPTEWLDKTLNPSFHRDFYKPTVAGAMH
YQGRRWAGSTKYNADTTFKSYGLSFSPRYPKTHKSFLQELEWAVDLPTSF
PPGRVTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGR
QLARPMHPELDGKAILVSGHHSMYYNLGDRYIIDASGG
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mRNA from alignment at P-canaliculata_contig100535:50..877-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100535.118.1 ID=mRNA_P-canaliculata_contig100535.118.1|Name=mRNA_P-canaliculata_contig100535.118.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=828bp|location=Sequence derived from alignment at P-canaliculata_contig100535:50..877- (Pelvetia canaliculata dioecious)
GGCCGCGTAGTGAAACCAGTCGATCGAGTCGTCTGTATTGGCGATATCCA TAGAAATTTTACTGAACTCCGCTCGTTATGGCGTACTCTGGAAAACAAAT TCGGCGCAGTTTTAGAATCGGCGGTTGTCGTCTTTTTGGTGACTGTTGCG ATCGAGGCCCAGATACGAAAGGCGTAATCGATTGGTTGATTGAGTTACGC GATCAACGTGTCCCCGACACCACTCGTTTTTTGGCGGGAAACCACGATTT TGGAATGGCTTGCTTTCTACAGTGTCCGCCGCTTGCGAGTCCGCCGCCGA CGGAGTGGTTGGACAAAACCCTCAACCCGAGTTTCCACCGAGATTTCTAC AAACCGACGGTTGCTGGGGCGATGCATTACCAAGGCCGCCGCTGGGCCGG ATCCACGAAGTACAACGCCGACACCACGTTTAAGAGTTATGGGCTTTCAT TTAGCGTCGCCAAAAAACCTGCCGATCACACCGCATTTTCAGCCGCGGTA CCCCAAAACGCACAAATCCTTCCTGCAAGAACTAGAATGGGCAGTGGACC TACCGACGTCTTTCCCGCCCGGACGCGTGACCGCGGTCCATGCCGGCTTC AACACCACCCAACCGCTGACACTACAAATCGCTCAATTACTTGCCCGAAA CTTCGACGCGCCGGCTTTAATTGCTGATAACGATATCAGCCGCTCAATCG CTTTTCACGGTCGCCAACTTGCTCGGCCCATGCACCCTGAACTCGATGGG AAAGCTATTTTAGTTTCAGGGCACCACAGCATGTATTACAATCTGGGAGA TCGATACATCATCGATGCCAGCGGTGGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig100535:50..877-

>mRNA_P-canaliculata_contig100535.118.1 ID=mRNA_P-canaliculata_contig100535.118.1|Name=mRNA_P-canaliculata_contig100535.118.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at P-canaliculata_contig100535:50..877- (Pelvetia canaliculata dioecious)
ATGGCGTACTCTGGAAAACAAATTCGGCGCAGTTTTAGAATCGGCGGTTG
TCGTCTTTTTGGTGACTGTTGCGATCGAGGCCCAGATACGAAAGGCGTAA
TCGATTGGTTGATTGAGTTACGCGATCAACGTGTCCCCGACACCACTCGT
TTTTTGGCGGGAAACCACGATTTTGGAATGGCTTGCTTTCTACAGTGTCC
GCCGCTTGCGAGTCCGCCGCCGACGGAGTGGTTGGACAAAACCCTCAACC
CGAGTTTCCACCGAGATTTCTACAAACCGACGGTTGCTGGGGCGATGCAT
TACCAAGGCCGCCGCTGGGCCGGATCCACGAAGTACAACGCCGACACCAC
GTTTAAGAGTTATGGGCTTTCATTTAGCATGGCGTACTCTGGAAAACAAA
TTCGGCGCAGTTTTAGAATCGGCGGTTGTCGTCTTTTTGGTGACTGTTGC
GATCGAGGCCCAGATACGAAAGGCGTAATCGATTGGTTGATTGAGTTACG
CGATCAACGTGTCCCCGACACCACTCGTTTTTTGGCGGGAAACCACGATT
TTGGAATGGCTTGCTTTCTACAGTGTCCGCCGCTTGCGAGTCCGCCGCCG
ACGGAGTGGTTGGACAAAACCCTCAACCCGAGTTTCCACCGAGATTTCTA
CAAACCGACGGTTGCTGGGGCGATGCATTACCAAGGCCGCCGCTGGGCCG
GATCCACGAAGTACAACGCCGACACCACGTTTAAGAGTTATGGGCTTTCA
TTTAGCCCGCGGTACCCCAAAACGCACAAATCCTTCCTGCAAGAACTAGA
ATGGGCAGTGGACCTACCGACGTCTTTCCCGCCCGGACGCGTGACCGCGG
TCCATGCCGGCTTCAACACCACCCAACCGCTGACACTACAAATCGCTCAA
TTACTTGCCCGAAACTTCGACGCGCCGGCTTTAATTGCTGATAACGATAT
CAGCCGCTCAATCGCTTTTCACGGTCGCCAACTTGCTCGGCCCATGCACC
CTGAACTCGATGGGAAAGCTATTTTAGTTTCAGGGCACCACAGCATGTAT
TACAATCTGGGAGATCGATACATCATCGATGCCAGCGGTGGCCCGCGGTA
CCCCAAAACGCACAAATCCTTCCTGCAAGAACTAGAATGGGCAGTGGACC
TACCGACGTCTTTCCCGCCCGGACGCGTGACCGCGGTCCATGCCGGCTTC
AACACCACCCAACCGCTGACACTACAAATCGCTCAATTACTTGCCCGAAA
CTTCGACGCGCCGGCTTTAATTGCTGATAACGATATCAGCCGCTCAATCG
CTTTTCACGGTCGCCAACTTGCTCGGCCCATGCACCCTGAACTCGATGGG
AAAGCTATTTTAGTTTCAGGGCACCACAGCATGTATTACAATCTGGGAGA
TCGATACATCATCGATGCCAGCGGTGGC
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