mRNA_P-canaliculata_contig10051.113.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10051.113.1
Unique NamemRNA_P-canaliculata_contig10051.113.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.050e-38
Identity = 67/128 (52.34%), Postives = 93/128 (72.66%), Query Frame = 3 
Query:   21 CSLCAETGV-RGGAMKMVTP-GVERSRHWVHVCCTMWIPEVFVGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADIKVPLDL 398
            C LC ET + +GGAMK V   G    + WVHV C++WIPEV   S+EL PV+L+++ K RK LKC+LCG++G CVQCAGGRCL++YHPWCL+H+D    ++ RS+  + +L+V+C+ H AD+   LDL
Sbjct:   58 CELCKETNLSKGGAMKQVLGNGKNGEKLWVHVSCSLWIPEVRFTSEELNPVNLDFIEKSRKILKCLLCGQKGTCVQCAGGRCLLSYHPWCLIHSD--RGIINRSISVQSHLHVFCQDHKADVISSLDL 183
[Close]
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.010e-33
Identity = 56/107 (52.34%), Postives = 80/107 (74.77%), Query Frame = 3 
Query:   78 GVERSRHWVHVCCTMWIPEVFVGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADIKVPLDL 398
            G    + WVHV C++WIPEV   S+EL PV+L+++ K RK LKC+LCG++G CVQCAGGRCL++YHPWCL+H+D    ++ RS+  + +L+V+C+ H AD+   LDL
Sbjct:    8 GKNGEKLWVHVSCSLWIPEVRFTSEELNPVNLDFIEKSRKILKCLLCGQKGTCVQCAGGRCLLSYHPWCLIHSD--RGIINRSISVQSHLHVFCQDHKADVISSLDL 112
[Close]
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A482RWD5_9ARCH (PHD-type domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWD5_9ARCH)

HSP 1 Score: 88.2 bits (217), Expect = 9.070e-19
Identity = 42/129 (32.56%), Postives = 70/129 (54.26%), Query Frame = 3 
Query:   15 LACSLCAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVG--SDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTK-NSLLFRSLDTKGNLNVYCRKHIADIKVPL 392
            ++C LC+    +GGA K +    ++   W H  C+ WIPE++    ++++  ++   +   R  LKC LC ++G CVQC+ GRC++A HPWC LHT       + R  D      ++CR H + +  P+
Sbjct:   67 VSCELCS---YKGGAYKPI----DKPHKWAHPLCSTWIPELYEEHKANKVPIINTSKLDSKRFKLKCALCKQKGACVQCSSGRCVIAAHPWCALHTPQGFTRRIVRGPDDLPLWQIFCRTHASGVSEPV 188
[Close]
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A1I8Q367_STOCA (Uncharacterized protein n=2 Tax=Stomoxys calcitrans TaxID=35570 RepID=A0A1I8Q367_STOCA)

HSP 1 Score: 84.7 bits (208), Expect = 1.800e-16
Identity = 50/125 (40.00%), Postives = 66/125 (52.80%), Query Frame = 3 
Query:   21 CSLCAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVGS-DELEPV-HLEYVPKDRKTLKCVLC-GKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGN------LNVYCRKH 368
            C LC     +GGAMK    G    +HW HV C +WIPEV +G  D +EP+  +  +P  R +L CVLC GK G C+QC+   C  AYH  C      ++ L  R++  +GN      L  YC KH
Sbjct:  404 CVLCPN---KGGAMKSTKSG----KHWAHVSCALWIPEVSIGCVDRMEPITKISSIPPSRWSLVCVLCRGKVGACIQCSVKTCKTAYHVTCAF----QHGLEMRAIIEEGNAEDGVKLRSYCHKH 517
[Close]
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A1I8M680_MUSDO (Uncharacterized protein n=1 Tax=Musca domestica TaxID=7370 RepID=A0A1I8M680_MUSDO)

HSP 1 Score: 84.3 bits (207), Expect = 2.450e-16
Identity = 49/125 (39.20%), Postives = 67/125 (53.60%), Query Frame = 3 
Query:   21 CSLCAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVGS-DELEPV-HLEYVPKDRKTLKCVLC-GKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGN------LNVYCRKH 368
            C LC     +GGAMK    G    +HW HV C +WIPEV +G  D +EP+  +  +P+ R +L CVLC G+ G C+QC+   C  AYH  C      ++ L  R++  +GN      L  YC KH
Sbjct:  397 CVLCPN---KGGAMKSTKSG----KHWAHVSCALWIPEVSIGCVDRMEPITKISSIPQSRWSLVCVLCRGRVGACIQCSVKTCKTAYHVTCAF----QHGLEMRAIIEEGNAEDGVKLRSYCHKH 510
[Close]
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A0P1AX52_PLAHL (Kinesin-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AX52_PLAHL)

HSP 1 Score: 84.0 bits (206), Expect = 3.230e-16
Identity = 41/120 (34.17%), Postives = 66/120 (55.00%), Query Frame = 3 
Query:   30 CAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVF---VGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADI 380
            CA   + GGA+++     ++   W HV C  WIPE++    G+ + E V +  + K R TL+C++CG RG C+QC  GRC  A+H  C     +  S+LF   + +     +CR H++D+
Sbjct:   58 CAVCPIAGGALRLT----DQCDVWCHVLCLNWIPELYHSLTGAMD-EAVQIALLDKSRSTLRCLICGLRGGCIQCVSGRCAKAFHVLCAFRAPS--SILFTGYNLQNQQVYHCRTHLSDV 170
[Close]
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A5D6XI01_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI01_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.290e-16
Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 3 
Query:   30 CAETGVRGGAMKMVT-PGVERSRHWVHVCCTMWIPEVFVG-SDEL-EPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADI 380
            C    V GGA++  + PGV     WVHV C  WIPE+    + EL + V++  + + R+TL+C++CG+RG C+QC  GRC  A+H  C + + +  +L+F   +       +C+ H+AD+
Sbjct:   95 CVVCPVEGGALRRTSQPGV-----WVHVLCVNWIPELSHSLTGELNQAVNIALLDRSRETLRCLVCGQRGGCIQCVSGRCARAFHVLCAIRSPS--TLIFTGYNGANQQVYHCKAHLADV 207
[Close]
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A1B0GCQ2_GLOMM (Uncharacterized protein n=6 Tax=Glossina TaxID=7393 RepID=A0A1B0GCQ2_GLOMM)

HSP 1 Score: 84.0 bits (206), Expect = 3.340e-16
Identity = 50/125 (40.00%), Postives = 66/125 (52.80%), Query Frame = 3 
Query:   21 CSLCAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVGS-DELEPV-HLEYVPKDRKTLKCVLCGKR-GVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGN------LNVYCRKH 368
            C LC     +GGAMK    G    RHW HV C +WIPEV +G  D +EP+  +  +P+ R  L CVLC +R G C+QC+   C  AYH  C      ++ L  R++  +GN      L  YC KH
Sbjct:  348 CVLCPN---KGGAMKSTKSG----RHWAHVSCALWIPEVSIGCVDRMEPITKISSIPQSRWHLLCVLCRERIGACIQCSVKTCKTAYHVTCAF----QHGLEMRAIIEEGNAEDGVKLRSYCHKH 461
[Close]
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A833WFP8_PHYIN (PHD-zinc-finger like domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WFP8_PHYIN)

HSP 1 Score: 83.6 bits (205), Expect = 4.410e-16
Identity = 40/119 (33.61%), Postives = 65/119 (54.62%), Query Frame = 3 
Query:   30 CAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVGSDEL--EPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADI 380
            CA   + GGA+++     ++   W HV C  WIPE++     +  E V +    K R TL+CV+CG RG C+QC  GRC  A+H  C   + +  SL+F   +++     +C+ H++D+
Sbjct:   74 CAVCPIAGGALRLT----DQRDVWCHVLCINWIPELYHSLTGVMDEAVKISLYEKSRSTLRCVICGVRGGCIQCVSGRCAKAFHVVCAFRSPS--SLVFTGYNSQNQQVYHCKTHLSDV 186
[Close]
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: D0MU88_PHYIT (Kinesin-like protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MU88_PHYIT)

HSP 1 Score: 83.6 bits (205), Expect = 4.500e-16
Identity = 40/119 (33.61%), Postives = 65/119 (54.62%), Query Frame = 3 
Query:   30 CAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVGSDEL--EPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADI 380
            CA   + GGA+++     ++   W HV C  WIPE++     +  E V +    K R TL+CV+CG RG C+QC  GRC  A+H  C   + +  SL+F   +++     +C+ H++D+
Sbjct:   74 CAVCPIAGGALRLT----DQRDVWCHVLCINWIPELYHSLTGVMDEAVKISLYEKSRSTLRCVICGVRGGCIQCVSGRCAKAFHVVCAFRSPS--SLVFTGYNSQNQQVYHCKTHLSDV 186
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV42_ECTSI1.050e-3852.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LHH7_9PHAE1.010e-3352.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482RWD5_9ARCH9.070e-1932.56PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A1I8Q367_STOCA1.800e-1640.00Uncharacterized protein n=2 Tax=Stomoxys calcitran... [more]
A0A1I8M680_MUSDO2.450e-1639.20Uncharacterized protein n=1 Tax=Musca domestica Ta... [more]
A0A0P1AX52_PLAHL3.230e-1634.17Kinesin-like protein n=1 Tax=Plasmopara halstedii ... [more]
A0A5D6XI01_9STRA3.290e-1635.83Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1B0GCQ2_GLOMM3.340e-1640.00Uncharacterized protein n=6 Tax=Glossina TaxID=739... [more]
A0A833WFP8_PHYIN4.410e-1633.61PHD-zinc-finger like domain n=1 Tax=Phytophthora i... [more]
D0MU88_PHYIT4.500e-1633.61Kinesin-like protein n=1 Tax=Phytophthora infestan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10051contigP-canaliculata_contig10051:7718..11043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size403
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10051.113.1prot_P-canaliculata_contig10051.113.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10051 7737..11043 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.7438695-UTR-P-canaliculata_contig10051:7717..77361622815578.7438695-UTR-P-canaliculata_contig10051:7717..7736Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10051 7718..7736 +
1693494147.958851-UTR-P-canaliculata_contig10051:7717..77361693494147.958851-UTR-P-canaliculata_contig10051:7717..7736Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10051 7718..7736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.754612-CDS-P-canaliculata_contig10051:7736..78511622815578.754612-CDS-P-canaliculata_contig10051:7736..7851Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10051 7737..7851 +
1693494147.97346-CDS-P-canaliculata_contig10051:7736..78511693494147.97346-CDS-P-canaliculata_contig10051:7736..7851Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10051 7737..7851 +
1622815578.769549-CDS-P-canaliculata_contig10051:10431..106471622815578.769549-CDS-P-canaliculata_contig10051:10431..10647Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10051 10432..10647 +
1693494147.9825861-CDS-P-canaliculata_contig10051:10431..106471693494147.9825861-CDS-P-canaliculata_contig10051:10431..10647Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10051 10432..10647 +
1622815578.782347-CDS-P-canaliculata_contig10051:10990..110431622815578.782347-CDS-P-canaliculata_contig10051:10990..11043Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10051 10991..11043 +
1693494147.9924657-CDS-P-canaliculata_contig10051:10990..110431693494147.9924657-CDS-P-canaliculata_contig10051:10990..11043Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10051 10991..11043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10051.113.1

>prot_P-canaliculata_contig10051.113.1 ID=prot_P-canaliculata_contig10051.113.1|Name=mRNA_P-canaliculata_contig10051.113.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=128bp
MLAMRRDGGEGRSHENGHAWGGEVTSLGTRLLHHVDSRGVCRLRRAGASA
PGVRAEGPQDPQVRALWEAWSVRAVRGRALPGGLPPLVPATHGHEEQPPV
SISRHQGKPQRVLPKTHCGHQSASRPS*
back to top

mRNA from alignment at P-canaliculata_contig10051:7718..11043+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10051.113.1 ID=mRNA_P-canaliculata_contig10051.113.1|Name=mRNA_P-canaliculata_contig10051.113.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3326bp|location=Sequence derived from alignment at P-canaliculata_contig10051:7718..11043+ (Pelvetia canaliculata dioecious)
AGAACACACCGATGCTCGCATGCTCGCTATGCGCCGAGACGGGGGTGAGG
GGAGGAGCCATGAAAATGGTCACGCCTGGGGTGGAGAGGTCACGTCATTG
GGTACACGTCTGCTGCACCATGTGGATTCCAGAGGTGCGCCTACTATCTT
GTTTTTGTTTTCCTTGTTTTGTGTTGTTACGAAGTTTTTGTCTTGTTTCA
CTCTTAAACGGCGTCCTACGGCACGAAGCGAGAGGTTTATCTAGAGAGGC
ACGACTTCCTTCCCCATGTCCTCTCGACACAGCTGTGGGTACAGTACTAA
TGTTGTGTAGCTCGTTTTCCGTCTTACTTAAATTGTGGTAGTTGCTGTTC
CGAATGCATACCTTCTGGTGCCTTCCCCGAGCAGCAAGGGTTTGAGAGAA
AGAAGAGAGGAAGGATGGGGGGAGGGAGGGAGGGGGGGAGTGGATAAATA
TGGAGAAGCGCTGAGGAGCGGTGGAGGTAATCCTTGCCTGATTCTTGGAA
TGATGCGCAAGTAGTACCTTGAGTCATCTTGGTTGTTCCTACATATTGCT
TGCAGCACAGCATGCCTTTTCCCCCTTCATTTCGTTCGGTGTGTCATCTG
TTCTGAGTCATCTCTGTTGTTTTCTCTTTTTCGGCCGATTTGGCTCCATA
TCCATACTTCTACAGCAGTCCCGAAATCTACATGCAGTCTGGTAGACATG
GAAACATGCGACAAATCACACACCGCGACGAAAAAGGTACATGGGAGGCG
TGGAACCTGTTGCACCCAAACCAGCTCATATGTACGCTATCTCGCTACCC
CGACAAAGGCGAGGGAGCTATTCATACTAACATTGTAACTCAAAGAAGAA
AAAAGGAGAGAAAAAGGAACCCTGCTTCGGTGGCTACTTGTAGAACGACG
CGAGGAAACGAGGAAAAACTGCCTAGCAGGCAGCGATCCGTGGTATCGTT
CCCGAAGGGGTTGCCAAAGTCTTAGTTTAACGTCTATGTTGGGGGGAGGC
TGGCTTCGGCGGCTCTCTTCCTCCTTTTTTTTTCGACACGTTCGTGCTCT
GCCCCCCCTTTCCACTTAGCGATGAACCGCCCTGCCCCCGTCCCGCGCCA
CTTCTTTCCAGCCCCCCTGGATGCTAAACGCGCAAGTGTCTTCTCTTCCT
TCACACATCCAAGCCAATCTTTCTCCTTCGCGCCTCGCCCTCGCCTCATC
CTGCGGTCGAGTCCGTGGGTCGTTACTCGTTTGGGTAGACGACCGTCGGG
CATGCGAAGAATCGCACCTGCCCAAAGGAGACACCTCGATCGTACGGTTG
TCTCGATGCTCTCGCAGCCGGTTTGTTTTGAGGGTGTGGTGTTGCGTTCG
CTCTATTCGCCTCGCTCCTATGATGCACAGCATAATATGGTGGTGTATGG
CGCGGATATTGGCGTAGTGGTCCTTGCGGAGGGTACACGTCGCGCACAAG
ACGGCCTCGACCACATCGGCTTTCACCATCTGCGCCTTGAGTATGATAGG
CACATTTGGTCGGTCGTAGAGAGGTAGCCCCTCCTTGTGCTACGCCGTGC
TTTATACTGTCTACTCTCTTATACGCTTCCTTTGTATTATTTCGGCCATT
GCATCTGGGGTTTCGGGGACGCTGCCTCCAAGATACACATCGAGTCCGTT
TGCTTGAAGCCCTGTCGTGCATTTTGTCTACGTACGCGTGTGGTCATTGG
TACGTACTTTTTTCTTCTTCTCCTTTTTAGAAACTGTGAGACCGAAAGCG
CTGCATATTTGTACCGGAACAACGATTTTTGTGGCACCATTTTCGCGAGA
GTCCTCGCGATGATCGCGAAACAACGCAAGCATCGTCAGCGTACACCATG
CCTCACACAGCTCGTTTGACTTCTGCCAGATCTTTTGAGGAAGTCCAGCT
TTGAGCTGAACTTTTGTAGACAAATGATCTCCCCCCTGCTTCGCCTTGTC
TCCTGCAGTCCAACGAAATCACACCCCAGTTTTTCATACGTTTTCCGCAT
CTCCATAGCACACCCTGGGCCATCGTTCGTACGTTGTGGGTTGCAATGAC
GATCTCGAGTCGGCGGGTCCGCTCGCGAGTCCTTATTCCCCTCTACTTCT
CCTTCCGCCGTGCGAGCCGCCCTGCTCGCCCCCGCCTCCTATTTTTGATC
AGTAACTTCCTTTTGCCTGTGCTTCCCTTCTTGCCTTGAGGTCTGATCCC
ACGAGTCGGGTTCAGTTCAGCCCGCCCTTCCCGTGCCGGCCCGCTCTCCT
TTAGTCCCGGGTCGAACCTGACAAACCCCGTGCTCATTCACGGGCTCTTC
TACCCCACCCCCCCCGCTTCCGTCGGCAGCATCCTTCTACCACAGCTGCT
CCGATCGTCCGAGGGACGAACGGTTTCGCAAGAGGATTCGGCGTAGGCTT
CGCTGCCAGCGCAGTTTGTTGCGATTGTGCGCCCCGACCCCGATCAGCAT
GTCCCAGGCGCTATTCAATAGCCACCCGGTCTTTGCGTGCCCGCCTCTGT
CTCCCACCTCACGTCCGCGCGGCCCAGGATCAAACTCACGCCCATCCCGG
CCGGGAAGCAGTCAGGGTATGAATGCATTTTTTGTGAGCTCGAGGATCAA
CCTTCAATTGAAACGGAGATAGACTTCGGATACACCTTTTTTTCACGTCA
CAGCACTGCGAATATATATGTCTTACGCCGATAAATCGTACGACGACGAA
ACACGCCCGTACAGGTGTTTGTAGGCTCCGACGAGCTGGAGCCAGTGCAC
CTGGAGTACGTGCCGAAGGACCGCAAGACCCTCAAGTGCGTGCTCTGTGG
GAAGCGTGGAGTGTGCGTGCAGTGCGCGGGAGGGCGTTGCCTGGTGGCCT
ACCACCCCTGGTGCCTGCTACACACGGACACGAAGAACAGCCTCCTGTTT
CGATCTCTAGACACCAAGGGAAACCTCAACGTGAGATGACATTTCAGGGA
TCAACGCGTGTCCGACGATTCGCTTGGCTTGAGTGTGTTGAGTTTTGATC
GGGTAATGCATTGGATAGTTAGCTTTAGTTTGAACCACTGAAATGTTTTT
TGTCATTGAGCCGTAGCTTGCCTTAATAAGTATAGGTCAAGAATGTTTTC
AAAGCCGCCCGATCGACGTTCCTGCAGCCGCACTTCTGATTTTTCTTTTT
TTCTACCGCCGCCGGTGGAGCCTCCCCCCCCCCACCCGCAAGCAAGCTGC
TCTTCTGAGCGTGACCCGTCAAAGTAACGCCTCTTGGAACTCAACGCCCT
TGCAATGGCCTGTGGCCTCTCAGGTGTACTGCCGAAAACACATTGCGGAC
ATCAAAGTGCCTCTCGACCTTCCTGA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10051:7718..11043+

>mRNA_P-canaliculata_contig10051.113.1 ID=mRNA_P-canaliculata_contig10051.113.1|Name=mRNA_P-canaliculata_contig10051.113.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at P-canaliculata_contig10051:7718..11043+ (Pelvetia canaliculata dioecious)
ATGCTCGCTATGCGCCGAGACGGGGGTGAGGGGAGGAGCCATGAAAATGG
TCACGCCTGGGGTGGAGAGGTCACGTCATTGGGTACACGTCTGCTGCACC
ATGTGGATTCCAGAGATGCTCGCTATGCGCCGAGACGGGGGTGAGGGGAG
GAGCCATGAAAATGGTCACGCCTGGGGTGGAGAGGTCACGTCATTGGGTA
CACGTCTGCTGCACCATGTGGATTCCAGAGGTGTTTGTAGGCTCCGACGA
GCTGGAGCCAGTGCACCTGGAGTACGTGCCGAAGGACCGCAAGACCCTCA
AGTGCGTGCTCTGTGGGAAGCGTGGAGTGTGCGTGCAGTGCGCGGGAGGG
CGTTGCCTGGTGGCCTACCACCCCTGGTGCCTGCTACACACGGACACGAA
GAACAGCCTCCTGTTTCGATCTCTAGACACCAAGGGAAACCTCAACGTGT
TTGTAGGCTCCGACGAGCTGGAGCCAGTGCACCTGGAGTACGTGCCGAAG
GACCGCAAGACCCTCAAGTGCGTGCTCTGTGGGAAGCGTGGAGTGTGCGT
GCAGTGCGCGGGAGGGCGTTGCCTGGTGGCCTACCACCCCTGGTGCCTGC
TACACACGGACACGAAGAACAGCCTCCTGTTTCGATCTCTAGACACCAAG
GGAAACCTCAACGTGTACTGCCGAAAACACATTGCGGACATCAAAGTGCC
TCTCGACCTTCCTGAGTGTACTGCCGAAAACACATTGCGGACATCAAAGT
GCCTCTCGACCTTCCTGA
back to top