mRNA_P-canaliculata_contig10050.112.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10050.112.1
Unique NamemRNA_P-canaliculata_contig10050.112.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: A0A6H5JGS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS5_9PHAE)

HSP 1 Score: 432 bits (1110), Expect = 2.300e-135
Identity = 318/651 (48.85%), Postives = 368/651 (56.53%), Query Frame = 3 
Query:    3 VRKLLEKGCSDINRGDKYGQTPLHIACHREGLLSCLKLLAAHQANLEALDANGNSALHTAAGSGAAAAAEFLLGRGLSVSDRNKDGHTPMDICNLHCPEDKRTSMQMLLARGAKA-EEDRAAGGEVTASTASDGGTPFSGTTATTFSEFVPESLTDAATEIEVMGTGGPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVALSVSSSDLRPASVLSSPSASRANETRELLARGEYRDENGTRSLSSSAGPGSRATSSTMILNERSPEASGSGTEVIVNGGE---APHSPLRRAK-------------------------------------------------------------------------------------------------------------------QASLQELHFAIFQGDTAKVEQVVERGDLAALNQADKYGQTPLHLACYKGSRAMTRLLVEGGASLDAVDVNGNGVVHAAVCDSPAVLAILIDNGADVTVPNNEGLTPKQGLCEKYCPPRLRGRMLQLLKEATLARAKEKARKERAAEGQLNIEAVYHQLAMLRSKLAATAAAQTEVSPSEAAAAAQTENSLLTLVEANVRVVECQRDALQDLETTAARLERMMRRLHMRLDTMSLEDMRY 1598
             RKLL+KGC D+NRGDK+GQTPLHIACHREGLL CL+LLAAH+ANL+ALDANGN+ALH+AAGSGAAAAA+FLLGRGLSV+DRNKDGHTPMDIC LHCP DK+ +MQ+LL  G K  EEDRAA                                     ++          XXXXXXXXXXXXXXXXXXXXXX         +  +V+  D    +V ++  A     +                             SS+ I   RS   SG  T     GG+   AP +P R  K                                                                                                                   + SLQELH AIFQGDTAKVE+VV RGD  AL++AD++GQTPLHLACYKGSR MTRLLVEGGA+L+AVDVNGNGVVHAAVCDSPAVLAILID+GADVTV N +GLTP Q LCE+YCPPRL+ RMLQLLKE  LA+AK  ARK + AE Q+NIEAVYHQLAMLRSKLAATAAA T++  SEAA  AQ EN+LLTLVEANVRVVE QR AL+++E T  R+ERM RRLHMRLD +   D+ +
Sbjct:   33 ARKLLQKGCPDVNRGDKFGQTPLHIACHREGLLGCLQLLAAHEANLKALDANGNTALHSAAGSGAAAAAKFLLGRGLSVADRNKDGHTPMDICMLHCPADKKRTMQLLLEGGVKVGEEDRAAXXXXX--------------------XXXXXXXXXNRYDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATNVPETGPMTKAVAGHDAGAGAVAAADVAVPHTPSTXXXXXXXXXXXXXXXXX---XXXXXXXXSSSSIAEPRSANPSGRAT--TTGGGDDRVAPTTPARTKKSTRGAFLSAVYRGVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTSLQELHLAIFQGDTAKVEEVVARGDARALSEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVANFDGLTP-QRLCEQYCPPRLKERMLQLLKEGALAQAKATARKNQVAEEQVNIEAVYHQLAMLRSKLAATAAANTDIPASEAAEGAQMENALLTLVEANVRVVEGQRHALENMEKTVDRMERMFRRLHMRLDLVHPGDVSF 657
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BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: D7FI34_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI34_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 9.330e-95
Identity = 174/239 (72.80%), Postives = 195/239 (81.59%), Query Frame = 3 
Query:  882 QASLQELHFAIFQGDTAKVEQVVERGDLAALNQADKYGQTPLHLACYKGSRAMTRLLVEGGASLDAVDVNGNGVVHAAVCDSPAVLAILIDNGADVTVPNNEGLTPKQGLCEKYCPPRLRGRMLQLLKEATLARAKEKARKERAAEGQLNIEAVYHQLAMLRSKLAATAAAQTEVSPSEAAAAAQTENSLLTLVEANVRVVECQRDALQDLETTAARLERMMRRLHMRLDTMSLEDMRY 1598
            +ASLQELH AIFQGDTAKVE+VV RGD  AL++AD++GQTPLHLACYKGSR MTRLLVEGGA+L+AVDVNGNGVVHAAVCDSPAVLAILID+GADVTV N +GLTP Q LCE+YCPPRL+ RMLQLLKEA LA+AK  ARK + AE Q+NIEAVYHQLAMLRSKLAATAAA T++  SEAA  AQ EN+LLTLVEANVRVVE QR               M RRLHMRLD +   D+ +
Sbjct:   47 RASLQELHLAIFQGDTAKVEEVVARGDARALSEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVSNFDGLTP-QRLCEQYCPPRLKERMLQLLKEAALAQAKATARKNQVAEEQVNIEAVYHQLAMLRSKLAATAAANTDIPASEAAEGAQMENALLTLVEANVRVVEGQRHXXXXXXXXXXXXXXMFRRLHMRLDLVHPGDVSF 284
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BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: D7FI33_ECTSI (Ankyrin repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI33_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 2.500e-34
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 3 
Query:   87 REGLLSCLKLLAAHQANLEALDANGNSALHTAAGSGAAAAAEFLLGRGLSVSDRNKDGHTPMDICNLHCPEDKRTSMQMLLARGAKA-EEDRA 362
            REGLL CL+LLAAH+ANL+ALDANGN+ALH+AAGSGAAAAA+FLLG GLSV+D+NKDGHTPMDIC LHCP DK+ +MQ+LL  G K  EEDRA
Sbjct:   13 REGLLGCLQLLAAHEANLKALDANGNTALHSAAGSGAAAAAKFLLGCGLSVADKNKDGHTPMDICTLHCPADKKRTMQLLLEGGVKVGEEDRA 105
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BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: A0A0B6Z005_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6Z005_9EUPU)

HSP 1 Score: 66.6 bits (161), Expect = 2.910e-9
Identity = 39/108 (36.11%), Postives = 64/108 (59.26%), Query Frame = 3 
Query:  891 LQELHFAIFQ----GDTAKVEQVVERGDLAALNQADKYGQTPLHLACYKGSRAMTRLLVEGGASLDAVDVNGNGVVHAAV-CDSPAVLAILIDNGADVTVPNNEGLTP 1199
            LQ+    IF+    G+  +V +++ + D   L+  +  GQ PLH+A  KG   +  ++VE  A LDAVD  GN V+H A+  +SP ++ +L+ +GA+V+V NN  + P
Sbjct:   22 LQDSPLRIFKCAQNGNAKEVARII-KSDPTRLHARNPQGQMPLHVAASKGHLVVVEVIVEAKADLDAVDNQGNTVLHLAIIAESPDIVTLLMKSGANVSVRNNAHMMP 128
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BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: A0A812WRB4_9DINO (AKR2B protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812WRB4_9DINO)

HSP 1 Score: 62.4 bits (150), Expect = 9.340e-7
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 3 
Query:    3 VRKLLEKGCSDINRGDKYGQTPLHIACHREGLLSCLKLLAAHQANLEALDANGNSALHTAAGSGAAAAAEFLLGRGLSVSDRNKDGHTPMDICNLHCPEDKRTSMQMLLARGAKA 347
            V++ L+K    ++  D  G T L  A      ++ +KLL   +AN  A+D+NGNS LH AAG G     E+LL  G++V+ RN  G TP+ +  L+  E    S+Q+L+A GA+A
Sbjct:  159 VQEFLQKK-KPLDSQDHKGITALGYAIG-SNRIAVVKLLLDSRANPFAVDSNGNSGLHYAAGYGRKELLEYLLKVGINVNQRNAQGQTPLAVAQLNKQE---ASLQLLVAHGAQA 268
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BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: C1MM05_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MM05_MICPC)

HSP 1 Score: 60.5 bits (145), Expect = 7.710e-6
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 3 
Query:  951 ERGDLAALNQADKYGQTPLHLACYKGSRAMTRLLVEGGASLDAVDVNGNGVVHAAVCDSPAVLAI---LIDNGADVTVPNNEGLTPKQGLCE 1217
            ERGD  A +  D++G TPL +AC    + +T+L V+ G  LDAV+  GN  +H   C S     +   L+  GA+  V N  GLTP++ L E
Sbjct:  186 ERGDFDA-SARDRFGNTPLIVACQNNRKRITKLCVKAGIPLDAVNAQGNSALH--YCYSYGYFELGEYLVTKGANPEVTNAAGLTPRETLSE 274
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BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: A0A1S3IJM5_LINUN (protein fem-1 homolog A n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IJM5_LINUN)

HSP 1 Score: 58.9 bits (141), Expect = 3.540e-5
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 3 
Query:  867 LRRAKQASLQELHFAIFQGDTAKVEQVVERGDLAALNQADKYGQTPLHLACYKGSRAMTR-------------LLVEGGASLDAVDVNGNGVVHAAVCDSPA---VLAILIDNGADVTVPNNEGLTPKQ 1205
            + R K+    E  F+ F+    K+ Q+  RG         + GQTPLHLAC K +  + R             LL+E GASL+ VDV GN  +H A  + P    V+ +L+++GA + + N  G TP Q
Sbjct:  287 MSRMKKKLSPEQEFS-FKKSIYKLVQLKPRG---------QKGQTPLHLACSKDTTTVGRYPVCSFPSAEVANLLMEVGASLEDVDVEGNTALHIAAANKPCKLDVMRVLLNHGAHLDMCNASGRTPMQ 405
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BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: A0A0M8ZYZ1_9HYME (Transient receptor potential channel pyrexia (Fragment) n=1 Tax=Melipona quadrifasciata TaxID=166423 RepID=A0A0M8ZYZ1_9HYME)

HSP 1 Score: 59.3 bits (142), Expect = 4.520e-5
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 3 
Query:    3 VRKLLEKGCSDINRGDKYGQTPLHIACHREGLLSCLKLLAAHQANLEALDANGNSALHTAAGSGAAAAAEFLLGRGLSVSDRNKDGHTPMDI 278
            V +LL    ++IN+ DKYG TPLHIA   E L  C+ +L  H A+L A        LH A  +GA    + LL RG SV ++N  G TP+ +
Sbjct:  551 VTELLITWKANINKTDKYGYTPLHIAALNE-LSQCVDVLIQHGADLSAR----TKVLHCAIRAGAVEIVKLLLERGASVVEKNHMGETPLHV 637
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BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: A0A1S3IJB5_LINUN (protein fem-1 homolog C-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IJB5_LINUN)

HSP 1 Score: 58.9 bits (141), Expect = 4.590e-5
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 3 
Query:  867 LRRAKQASLQELHFAIFQGDTAKVEQVVERGDLAALNQADKYGQTPLHLACYKGSRAMTR-------------LLVEGGASLDAVDVNGNGVVHAAVCDSPA---VLAILIDNGADVTVPNNEGLTPKQ 1205
            + R K+    E  F+ F+    K+ Q+  RG         + GQTPLHLAC K +  + R             LL+E GASL+ VDV GN  +H A  + P    V+ +L+++GA + + N  G TP Q
Sbjct:  463 MSRMKKKLSPEQEFS-FKKSIYKLVQLKPRG---------QKGQTPLHLACSKDTTTVGRYPVCSFPSAEVANLLMEVGASLEDVDVEGNTALHIAAANKPCKLDVMRVLLNHGAHLDMCNASGRTPMQ 581
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BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: A0A8J4PLR6_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PLR6_9MYCE)

HSP 1 Score: 56.2 bits (134), Expect = 6.940e-5
Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  900 LHFAIFQGDTAKVEQVVERGDLAALNQADKYGQTPLHLACY--KGSRAMTRLLVEGGASLDAVDVNGNGVVH-AAVCDSPAVLAILIDNGADVTVPNNEGLTPKQ 1205
            LH+A  +G T  V+ ++  G   A N+ D+ G  P+H A     G+ A    L++  A++++ + NG+   H AA   +  V+ +L+ NGAD+T+ NNE  TP Q
Sbjct:  116 LHYASSKGRTDIVDLLLNYG---AKNRKDETGAAPIHRAAAAPNGAAATVERLLKSDANINSTNSNGDTAAHIAAEYGNEDVMDVLLKNGADMTIENNEHKTPLQ 217
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JGS5_9PHAE2.300e-13548.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI34_ECTSI9.330e-9572.80Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FI33_ECTSI2.500e-3477.42Ankyrin repeat protein (Partial) (Fragment) n=1 Ta... [more]
A0A0B6Z005_9EUPU2.910e-936.11Uncharacterized protein (Fragment) n=1 Tax=Arion v... [more]
A0A812WRB4_9DINO9.340e-738.26AKR2B protein n=3 Tax=Symbiodinium TaxID=2949 RepI... [more]
C1MM05_MICPC7.710e-639.13Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A1S3IJM5_LINUN3.540e-534.11protein fem-1 homolog A n=1 Tax=Lingula unguis Tax... [more]
A0A0M8ZYZ1_9HYME4.520e-541.30Transient receptor potential channel pyrexia (Frag... [more]
A0A1S3IJB5_LINUN4.590e-534.11protein fem-1 homolog C-like n=1 Tax=Lingula ungui... [more]
A0A8J4PLR6_9MYCE6.940e-534.29Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10050contigP-canaliculata_contig10050:1437..7306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score315.5
Seed ortholog evalue4.1e-83
Seed eggNOG ortholog2880.D7FI34
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-10_003340.1
Exons8
Model size3064
Cds size1335
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10050.112.1prot_P-canaliculata_contig10050.112.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10050 1706..5846 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.550398-UTR-P-canaliculata_contig10050:1436..17051622815578.550398-UTR-P-canaliculata_contig10050:1436..1705Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10050 1437..1705 +
1693494147.8388765-UTR-P-canaliculata_contig10050:1436..17051693494147.8388765-UTR-P-canaliculata_contig10050:1436..1705Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10050 1437..1705 +
1622815578.6963236-UTR-P-canaliculata_contig10050:5846..73061622815578.6963236-UTR-P-canaliculata_contig10050:5846..7306Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10050 5847..7306 +
1693494147.948572-UTR-P-canaliculata_contig10050:5846..73061693494147.948572-UTR-P-canaliculata_contig10050:5846..7306Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10050 5847..7306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.5655985-CDS-P-canaliculata_contig10050:1705..17081622815578.5655985-CDS-P-canaliculata_contig10050:1705..1708Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10050 1706..1708 +
1693494147.8510723-CDS-P-canaliculata_contig10050:1705..17081693494147.8510723-CDS-P-canaliculata_contig10050:1705..1708Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10050 1706..1708 +
1622815578.5761254-CDS-P-canaliculata_contig10050:2017..26291622815578.5761254-CDS-P-canaliculata_contig10050:2017..2629Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10050 2018..2629 +
1693494147.8610926-CDS-P-canaliculata_contig10050:2017..26291693494147.8610926-CDS-P-canaliculata_contig10050:2017..2629Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10050 2018..2629 +
1622815578.5884838-CDS-P-canaliculata_contig10050:2893..29441622815578.5884838-CDS-P-canaliculata_contig10050:2893..2944Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10050 2894..2944 +
1693494147.8685062-CDS-P-canaliculata_contig10050:2893..29441693494147.8685062-CDS-P-canaliculata_contig10050:2893..2944Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10050 2894..2944 +
1622815578.6000242-CDS-P-canaliculata_contig10050:3709..37991622815578.6000242-CDS-P-canaliculata_contig10050:3709..3799Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10050 3710..3799 +
1693494147.8767393-CDS-P-canaliculata_contig10050:3709..37991693494147.8767393-CDS-P-canaliculata_contig10050:3709..3799Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10050 3710..3799 +
1622815578.610448-CDS-P-canaliculata_contig10050:4334..45111622815578.610448-CDS-P-canaliculata_contig10050:4334..4511Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10050 4335..4511 +
1693494147.8935833-CDS-P-canaliculata_contig10050:4334..45111693494147.8935833-CDS-P-canaliculata_contig10050:4334..4511Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10050 4335..4511 +
1622815578.650327-CDS-P-canaliculata_contig10050:4820..49431622815578.650327-CDS-P-canaliculata_contig10050:4820..4943Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10050 4821..4943 +
1693494147.9038396-CDS-P-canaliculata_contig10050:4820..49431693494147.9038396-CDS-P-canaliculata_contig10050:4820..4943Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10050 4821..4943 +
1622815578.6669326-CDS-P-canaliculata_contig10050:5198..53681622815578.6669326-CDS-P-canaliculata_contig10050:5198..5368Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10050 5199..5368 +
1693494147.9172575-CDS-P-canaliculata_contig10050:5198..53681693494147.9172575-CDS-P-canaliculata_contig10050:5198..5368Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10050 5199..5368 +
1622815578.6838212-CDS-P-canaliculata_contig10050:5737..58461622815578.6838212-CDS-P-canaliculata_contig10050:5737..5846Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10050 5738..5846 +
1693494147.934652-CDS-P-canaliculata_contig10050:5737..58461693494147.934652-CDS-P-canaliculata_contig10050:5737..5846Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10050 5738..5846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10050.112.1

>prot_P-canaliculata_contig10050.112.1 ID=prot_P-canaliculata_contig10050.112.1|Name=mRNA_P-canaliculata_contig10050.112.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=445bp
MDICNLHCPEDKRTSMQMLLARGAKAEEDRAAGGEVTASTASDGGTPFSG
TTATTFSEFVPESLTDAATEIEVMGTGGPGAGSAGGSSRGGGGFGGFGGS
KTAAAAAAAAGAVALSVSSSDLRPASVLSSPSASRANETRELLARGEYRD
ENGTRSLSSSAGPGSRATSSTMILNERSPEASGSGTEVIVNGGEAPHSPL
RRAKQASLQELHFAIFQGDTAKVEQVVERGDLAALNQADKYGQTPLHLAC
YKGSRAMTRLLVEGGASLDAVDVNGNGVVHAAVCDSPAVLAILIDNGADV
TVPNNEGLTPKQGLCEKYCPPRLRGRMLQLLKEATLARAKEKARKERAAE
GQLNIEAVYHQLAMLRSKLAATAAAQTEVSPSEAAAAAQTENSLLTLVEA
NVRVVECQRDALQDLETTAARLERMMRRLHMRLDTMSLEDMRYP*
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mRNA from alignment at P-canaliculata_contig10050:1437..7306+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10050.112.1 ID=mRNA_P-canaliculata_contig10050.112.1|Name=mRNA_P-canaliculata_contig10050.112.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5870bp|location=Sequence derived from alignment at P-canaliculata_contig10050:1437..7306+ (Pelvetia canaliculata dioecious)
AGGTACGAAAACTTCTGGAAAAGGGATGCTCCGACATCAACCGCGGGGAC
AAGTACGGCCAGACTCCCCTGCACATAGCCTGTCACAGGGAAGGCCTCTT
GAGCTGCCTGAAGCTCCTCGCCGCCCACCAAGCGAATCTCGAAGCCCTGG
ACGCCAACGGTAACAGCGCGTTGCACACGGCGGCGGGTTCGGGAGCGGCG
GCGGCGGCTGAATTTCTGCTGGGGCGTGGGCTGTCCGTGTCTGACCGGAA
CAAGGACGGACACACTCCAATGGTGCGACCTCGTTTTCTTTGCTGCTTTA
TTCCTATTAGCAGTGGGAAAGTGTCGCCCGTGTGGCGTGCATAGATAGCG
AAAGCATTGCACAGGCCGTGGGTAGTGAGAGAGACCGAATCGGGGGCCTA
ACATTCAGGGCCGCACCGCGCGACGCGTGACCCCCTAGAACCAACGGCTC
TATGCATTCTTACCCGCGGGGCGGTTAGCTGCCGTCGTGGGCTTCGCCCG
CCAATCTTACGATCGATTGAAACGCTCGTCTTGTGAATTTACTACTATGC
GTATGTACCTATACATATTTGGAACCTGCAGGACATCTGCAACCTGCACT
GTCCGGAGGACAAGCGAACGTCGATGCAGATGCTGCTGGCGCGAGGTGCG
AAGGCGGAGGAAGACCGAGCCGCGGGGGGCGAGGTCACCGCGAGCACCGC
GAGCGACGGGGGGACGCCCTTCAGTGGAACCACGGCCACGACGTTTTCCG
AGTTCGTTCCCGAATCTCTGACGGATGCCGCGACGGAAATAGAGGTGATG
GGGACGGGGGGACCGGGCGCAGGTTCCGCCGGCGGCAGCTCCAGAGGCGG
GGGTGGATTCGGCGGATTCGGCGGCAGCAAGACCGCTGCCGCTGCTGCTG
CCGCTGCTGGCGCTGTTGCTTTAAGTGTTTCGTCGTCCGATCTTCGTCCG
GCATCGGTCCTTTCTTCTCCCAGCGCTTCAAGGGCGAACGAGACACGAGA
GCTGTTGGCTAGGGGTGAATACAGGGACGAGAACGGAACGCGGTCGCTCT
CGTCGAGCGCAGGGCCGGGGTCGCGGGCGACGTCCTCGACGATGATCTTG
AACGAGAGGAGCCCCGAGGCTTCGGGATCGGGAACCGAGGTTATCGTTAA
CGGTGGAGAGGCGCCACATTCGCCCTTGCGACGAGCCAAGCAGGTGAGAG
CAGCTGCTGTTCGGATGCGCGGGATGGGCGGGGGGGGAAGGGGAAACGAG
AGAAAAAATGTCGTGGCTGAGGGGGGTGAGGGATAGCCAGAGCGGCTGCT
TTTGTTGTTTTTGAGGGCTGACCTCTTGATCGGACTGTTCCTCAACCTTT
TTTTCTTACTAGGGGAGGGGGGGGGGATTATAGTCAAATCTCACCGTCTT
CTACTATGGTCTCGCTCTTTTGCTGCGCTTGGTTATCGTCGATCGGGGCG
GGAGCAGGCGTCGTTGCAGGAGCTGCACTTCGCCATATTTCAGGGCGACA
CCGCCAAGGTATGGTCACCTCACACGCACTCTCTCTAGAAGATACTGTAA
TTGCAAGGAAGCAGCGAACGAAGCACAAGGTACTCTGGGCTTGTATAATA
AGTGCAGAGAGAGTGTGTTTCCTTTGTCGCGTCTTATCAGAGGTTTTCGT
CTACTATTAATGAGTATCATTGATCCTAAACCCACCATTCGAAATGCCGT
AGTACAAAATAGAAAATAGCGCGCCAAACGAGAAAAGTAACAAAACAAGG
AATGCGAGGCGCGGGGAGTGGACGAGGATGACACGGGACTTTCGAAGGGT
TTTGTATTGGTTTGTTCTGTTCGGGTTTTCTTTTCTTCTCTCCTGTTAAT
ATTTCCCGGTCCCTCTTTGTTCTTCGCAGCTATGCAAGGACCATGCCAGA
TTATGTTGCTGTAGACGATAATGCAATACGTAATGTGGTATGGTACGTTG
TTGACCACAACAACAAAAAATCACCCCAGAGGAAAGTACGCCAACCCAAG
CTTTACCTGCCGCCGAGGTTGAGAAGGCGCCAACCCAAGCGATGCTCACC
ATGCACGCGACGGGATCTATCCCCATCATGCATCGTCCTGGAGCTGTTTC
TCGAATCCATGTATTTGTGCGTGTGGGCGTGTAGTTGTATTTATTAAATT
ACACACAACCGCTCAATCCGGCCCTCTGTCATCGTAGTCATTCTATGCCA
ACCGCATTGTTCCTCCGAAGTTGGTATATTTATTGGATCGTACATAACCG
TCCAACCCGGCCCTGACACACAGGTGGAGCAGGTTGTGGAGCGTGGCGAC
CTGGCAGCGCTTAATCAGGCGGACAAGTACGGCCAAACCCCGTTACACCT
AGCCTGCTACAAGGTGCAGCCTCTCTCTCACTACAAATCCCTTAGGATAC
CAGACACGAGAGACATACAACTAGGGAGAAGGGCGAAGTGTGAGCCAGAC
GAGAGGCATTTTTACTTCGAGAGGGACTGTGGGCGGGCCGAAGTGGCTTG
TTGTGCGCTAACGTTCTGAGGACAGAACCCTCTTTCGCTTCGAAAATACT
TGGGGCGAGATATTTCAAAATCTGAGTTGATTTGTACCGAATTACTGTTG
TTTTTATTGATGTCATTGCTCGTCTCGTCGTCGTGAAGAACTATAAAAAG
GGATATGTGTGTGTGTGTGGGGGGGGTGTATAGGGTAAAGAGCTTTCTCC
CCCCTCCAGGGTGTTGTGCTCCTCTTCATCTTAGAGCAAAACATTTGCGT
GCAGCACAAAAAACAACTACGATACTGTGTGTGTGTATTTATTAAATTGC
ACATAACCGCGTAATCCGGCCTTGTCATCCTAGTCATTCTATGCCACTCG
CATTGAGTGTGTGTGTCTTTCTGCTTGTTTTGCGCGCTACTTCGATAGGG
ATCGCGGGCCATGACACGGCTGCTGGTAGAGGGCGGGGCCAGTCTGGACG
CGGTAGACGTGAATGGCAACGGGGTGGTGCACGCGGCCGTGTGCGACTCC
CCCGCAGTGCTGGCCATTCTCATCGACAATGGGGCGGACGTGACCGTGCC
CAACAACGAGGGTCTCACCCCCAAGGTGTGACAAAAATAAGGCTGGGAGG
CAACCAATCATAATGTGCGCCGAGTGTTGCCGTTTCCGTGTGACATCGTG
CGTTGTCTGAGGAACTGTGATTTTGTGATGATGCCGGCCACCTCGAGCTG
TCGACGTTGTCGCGGGTGCCACTTCTAGTGCTTGGGCGCGAGCTCACGCC
ACGCGTCCGCGCTAACTATGTCGCAATATTAGAGTTGTTGCGGCTACATA
TGGTATGGAACATATCTTCCCACCTTCCCGAGACATCAATTTATCGCTAC
CACGCTTCTGCTCCTCTGGGTGGGGGGTGGGGAGCAGGGACTCTGTGAGA
AGTACTGCCCGCCGCGCTTGAGGGGGCGGATGCTTCAGCTCCTGAAGGAG
GCGACGTTGGCGCGGGCGAAGGAAAAAGCGCGAAAGGAGCGCGCGGCGGA
GGGCCAGGTACCCCAAACAAGAGGGAAGGGGGGGTCAACCCTGGCGAATG
AAATGCCTGTGTAGGAGAGTAACCACTACCGTCAACAGTCTATGGGAAGT
GCTTACGGTAATGGAAGATCGGGGTTTTTATGAGACGCCCGTCATTTACC
TGTTCTAGCCAAGCTCTTCACCGGATTGGAACGCCTGCAAATCGAGATGC
AAACCCTTGAACTAGAAGCACCCCCCCCCCCCATATGCCCCCTTGGGACC
CTGGTCTGCTAGCTGAATATCGAGGCGGTGTACCACCAGCTGGCGATGTT
GCGATCGAAGCTTGCGGCGACGGCTGCGGCGCAGACCGAAGTGTCACCGT
CGGAGGCAGCGGCGGCCGCGCAGACGGAAAATTCGCTCCTAACCCTCGTG
GAGGCCAACGTGCGCGTGGTGGAATGCCAGCGGTAAGGAGTGTAGAGGTT
GCAATCGTCTCATTTTTTTCCACGTTCCATGTGTTTTTTTTTTACTGTCC
CTCTCCTCTGGCTGTAAACGAATGTCTTCTTTTTTTGTGAGGAAAACCGA
TCGCTCGCGCTGATTTTCGGCTTCGGGGTGGTTTTCGAGCCTCGGGAGCG
GGAACGAGGAAGGTACATGAAGCAACTGTACTCCTTTTTCACCAATCTTA
TCCACGCGCGAGCCCTTCGTGCCATCTCAATGCAGATGAACTTTTACTAT
ATCCCTTCATACACCTCCCGGCGCCCGATTTTCAAATGTTTATCTTTTCA
TCACCACTGGTGCGTTTCTCTGGCGCGGCGCCCCGGCTTCGTCTTCCCAA
GGGATGCCTTGCAGGACTTGGAAACCACGGCAGCGAGGCTGGAGCGCATG
ATGCGCCGATTGCACATGCGCCTCGACACCATGAGTCTGGAGGACATGCG
CTATCCCTGAGACACCAGCGTGTCGCTCTTGCGGCGGGTCGGCGGGATCG
GGTGACAGAACCAGTCCCTCGCTCCCCCCTCCCCCCCTGCGCGCGCCAAG
CTATCGACGGTCCATCCCCTCGCGCCATGGTGACGCACACGCGCGCCTGT
GTCAACGCCCCCCCTCTTCGAGCGGTGCGTTTGAGAGATGCACGCTTTCC
ACGTGTGTTCCGCCTTTCATGAACGTCGGGTTCTACTTGCTGTTGATCGT
GTCTTGTTCTAACGGTCTGTGATTTCGGTTCTTCAGTTTCTCAACATGTT
TCCTTACGCTACTTTGGCGCACGCAATCTCTCGTCTAAAAAAATAAAAAA
CAAAAACAGAATGTCATTTTTATTTTTATTTTGCGATATGTGGGGTGTGC
GGGGTTTGTACACTCTTGATTGTCACACGTTCGGTTCGTCAAAAATGAGT
TGCATGGTGCCGTTTTTTCTTTTGTTGTTGTGTTTTGATTGTTGTGTTTT
GGCTGTTATTTGTGTCCTCTTCGTCGGCACACGTTCGGTTTGTCCTAAAT
TATCTACAGTGTCCATATTTGTTGCTCAGTTTTTATTCCCTCCCTCCGCT
TCTCGTCAAGTTTTTAGTCCATAGCGGTCAAAGTCGTTAAGTTACAGACC
TGGCATGGGTTTGGATAGGTTTTACAAGGTGTTGAATTCGAGGGAGAAGG
GGATGGGGGTTAGGAGTCCCAAGTCGTCCAGAAGCGGGGGCGCAAGACTC
CTGAACTGCGTGGGTCTCGATACGAAACAGATGTGCCGCCACGGGCGAGA
AATAACGCCACGGGGTCGTTCTAGCGAGGAACAAGTGAGTGCGCAGCTCG
CTTGTGTCACTGCTGGCGCAACGTTGTATGCCCCGGTGACCTTGCACGCT
GCCAGTGAATGTGACAAAAAAATAAAAAAATAAAAAGAGTGAATGACCTA
CACGAGTACGTTCGTCCTTCCCGCCTTGTTTCCCTTTCGGCAACTCCTCA
TACCCGTCACCCTCCCCCTCCCAGAGCAGAGGAACGTTATAGAAATTCGT
AGAAACTTCGTGAAAGGGAAACTTTCCAGCGTTCGCGTGTTAATAAGGAC
TTGAGCGACAGTAAACTTGTGGGCAAAATCGTCGAGGAGGCATTATCGCC
CCTCTCTAACACGCCCCTTTTCGTGTGTGGAGGCGATGTTTCGTGTTTTT
CGCGTTTTTGCTGTCGGCATTCGCTGCTGGTATATGGCTCATTTGCCGCT
TTGCCGTGGGTCCGACGAAGTTCCTGTGCATAAGAGGGGGAAGAGGAGAT
GTTGATCGAGAAATACAAGTGATTTTTTTACGAATATTTTCAGAGTTTGC
AGTAAAGTGGCCCTAAAAAGCTAACGCTGTGAATTGTAAAAAGGATTTGA
ATAGTTTTTTTGAAGGGGTGGTGTTCGTGGGCGATCTATGGAATCATGAA
AGAACGAACGTGTTCGCGGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10050:1437..7306+

>mRNA_P-canaliculata_contig10050.112.1 ID=mRNA_P-canaliculata_contig10050.112.1|Name=mRNA_P-canaliculata_contig10050.112.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2670bp|location=Sequence derived from alignment at P-canaliculata_contig10050:1437..7306+ (Pelvetia canaliculata dioecious)
ATGATGGACATCTGCAACCTGCACTGTCCGGAGGACAAGCGAACGTCGAT
GCAGATGCTGCTGGCGCGAGGTGCGAAGGCGGAGGAAGACCGAGCCGCGG
GGGGCGAGGTCACCGCGAGCACCGCGAGCGACGGGGGGACGCCCTTCAGT
GGAACCACGGCCACGACGTTTTCCGAGTTCGTTCCCGAATCTCTGACGGA
TGCCGCGACGGAAATAGAGGTGATGGGGACGGGGGGACCGGGCGCAGGTT
CCGCCGGCGGCAGCTCCAGAGGCGGGGGTGGATTCGGCGGATTCGGCGGC
AGCAAGACCGCTGCCGCTGCTGCTGCCGCTGCTGGCGCTGTTGCTTTAAG
TGTTTCGTCGTCCGATCTTCGTCCGGCATCGGTCCTTTCTTCTCCCAGCG
CTTCAAGGGCGAACGAGACACGAGAGCTGTTGGCTAGGGGTGAATACAGG
GACGAGAACGGAACGCGGTCGCTCTCGTCGAGCGCAGGGCCGGGGTCGCG
GGCGACGTCCTCGACGATGATCTTGAACGAGAGGAGCCCCGAGGCTTCGG
GATCGGGAACCGAGGTTATCGTTAACGGTGGAGAGGCGCCACATTCGCCC
TTGCGACGAGCCAAGCAGGACATCTGCAACCTGCACTGTCCGGAGGACAA
GCGAACGTCGATGCAGATGCTGCTGGCGCGAGGTGCGAAGGCGGAGGAAG
ACCGAGCCGCGGGGGGCGAGGTCACCGCGAGCACCGCGAGCGACGGGGGG
ACGCCCTTCAGTGGAACCACGGCCACGACGTTTTCCGAGTTCGTTCCCGA
ATCTCTGACGGATGCCGCGACGGAAATAGAGGTGATGGGGACGGGGGGAC
CGGGCGCAGGTTCCGCCGGCGGCAGCTCCAGAGGCGGGGGTGGATTCGGC
GGATTCGGCGGCAGCAAGACCGCTGCCGCTGCTGCTGCCGCTGCTGGCGC
TGTTGCTTTAAGTGTTTCGTCGTCCGATCTTCGTCCGGCATCGGTCCTTT
CTTCTCCCAGCGCTTCAAGGGCGAACGAGACACGAGAGCTGTTGGCTAGG
GGTGAATACAGGGACGAGAACGGAACGCGGTCGCTCTCGTCGAGCGCAGG
GCCGGGGTCGCGGGCGACGTCCTCGACGATGATCTTGAACGAGAGGAGCC
CCGAGGCTTCGGGATCGGGAACCGAGGTTATCGTTAACGGTGGAGAGGCG
CCACATTCGCCCTTGCGACGAGCCAAGCAGGCGTCGTTGCAGGAGCTGCA
CTTCGCCATATTTCAGGGCGACACCGCCAAGGCGTCGTTGCAGGAGCTGC
ACTTCGCCATATTTCAGGGCGACACCGCCAAGGTGGAGCAGGTTGTGGAG
CGTGGCGACCTGGCAGCGCTTAATCAGGCGGACAAGTACGGCCAAACCCC
GTTACACCTAGCCTGCTACAAGGTGGAGCAGGTTGTGGAGCGTGGCGACC
TGGCAGCGCTTAATCAGGCGGACAAGTACGGCCAAACCCCGTTACACCTA
GCCTGCTACAAGGGATCGCGGGCCATGACACGGCTGCTGGTAGAGGGCGG
GGCCAGTCTGGACGCGGTAGACGTGAATGGCAACGGGGTGGTGCACGCGG
CCGTGTGCGACTCCCCCGCAGTGCTGGCCATTCTCATCGACAATGGGGCG
GACGTGACCGTGCCCAACAACGAGGGTCTCACCCCCAAGGGATCGCGGGC
CATGACACGGCTGCTGGTAGAGGGCGGGGCCAGTCTGGACGCGGTAGACG
TGAATGGCAACGGGGTGGTGCACGCGGCCGTGTGCGACTCCCCCGCAGTG
CTGGCCATTCTCATCGACAATGGGGCGGACGTGACCGTGCCCAACAACGA
GGGTCTCACCCCCAAGCAGGGACTCTGTGAGAAGTACTGCCCGCCGCGCT
TGAGGGGGCGGATGCTTCAGCTCCTGAAGGAGGCGACGTTGGCGCGGGCG
AAGGAAAAAGCGCGAAAGGAGCGCGCGGCGGAGGGCCAGCAGGGACTCTG
TGAGAAGTACTGCCCGCCGCGCTTGAGGGGGCGGATGCTTCAGCTCCTGA
AGGAGGCGACGTTGGCGCGGGCGAAGGAAAAAGCGCGAAAGGAGCGCGCG
GCGGAGGGCCAGCTGAATATCGAGGCGGTGTACCACCAGCTGGCGATGTT
GCGATCGAAGCTTGCGGCGACGGCTGCGGCGCAGACCGAAGTGTCACCGT
CGGAGGCAGCGGCGGCCGCGCAGACGGAAAATTCGCTCCTAACCCTCGTG
GAGGCCAACGTGCGCGTGGTGGAATGCCAGCGCTGAATATCGAGGCGGTG
TACCACCAGCTGGCGATGTTGCGATCGAAGCTTGCGGCGACGGCTGCGGC
GCAGACCGAAGTGTCACCGTCGGAGGCAGCGGCGGCCGCGCAGACGGAAA
ATTCGCTCCTAACCCTCGTGGAGGCCAACGTGCGCGTGGTGGAATGCCAG
CGGGATGCCTTGCAGGACTTGGAAACCACGGCAGCGAGGCTGGAGCGCAT
GATGCGCCGATTGCACATGCGCCTCGACACCATGAGTCTGGAGGACATGC
GCTATCCCTGAGGATGCCTTGCAGGACTTGGAAACCACGGCAGCGAGGCT
GGAGCGCATGATGCGCCGATTGCACATGCGCCTCGACACCATGAGTCTGG
AGGACATGCGCTATCCCTGA
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