mRNA_P-canaliculata_contig100479.109.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100479.109.1
Unique NamemRNA_P-canaliculata_contig100479.109.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig100479.109.1 vs. uniprot
Match: A0A2Z2NW59_9GAMM (Uncharacterized protein n=1 Tax=Granulosicoccus antarcticus IMCC3135 TaxID=1192854 RepID=A0A2Z2NW59_9GAMM)

HSP 1 Score: 59.7 bits (143), Expect = 4.060e-9
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:   34 DARSIALGGAVIANGKGVHGALANPASMMAMQRRGETTH 150
            DARSIALGG+VIANG+GVHGA+ NPAS+MAMQ+R ET H
Sbjct:   59 DARSIALGGSVIANGQGVHGAVDNPASLMAMQQRKETFH 97
[Close]
BLAST of mRNA_P-canaliculata_contig100479.109.1 vs. uniprot
Match: A0A848U6V8_9GAMM (Conjugal transfer protein TraF n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848U6V8_9GAMM)

HSP 1 Score: 58.9 bits (141), Expect = 7.600e-9
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:   34 DARSIALGGAVIANGKGVHGALANPASMMAMQRRGETTH 150
            DARSIALGG+VIANG+GVHGAL NPAS+MAM+RR E  H
Sbjct:   55 DARSIALGGSVIANGQGVHGALENPASLMAMKRRKEKFH 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100479.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2Z2NW59_9GAMM4.060e-979.49Uncharacterized protein n=1 Tax=Granulosicoccus an... [more]
A0A848U6V8_9GAMM7.600e-979.49Conjugal transfer protein TraF n=1 Tax=Granulosico... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100479contigP-canaliculata_contig100479:876..1025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.1548526-CDS-P-canaliculata_contig100479:875..10251622815578.1548526-CDS-P-canaliculata_contig100479:875..1025Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100479 876..1025 +
1693494147.5666304-CDS-P-canaliculata_contig100479:875..10251693494147.5666304-CDS-P-canaliculata_contig100479:875..1025Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100479 876..1025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100479.109.1prot_P-canaliculata_contig100479.109.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100479 876..1025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100479.109.1

>prot_P-canaliculata_contig100479.109.1 ID=prot_P-canaliculata_contig100479.109.1|Name=mRNA_P-canaliculata_contig100479.109.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=50bp
TLCANSVAAASDARSIALGGAVIANGKGVHGALANPASMMAMQRRGETTH
back to top

mRNA from alignment at P-canaliculata_contig100479:876..1025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100479.109.1 ID=mRNA_P-canaliculata_contig100479.109.1|Name=mRNA_P-canaliculata_contig100479.109.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at P-canaliculata_contig100479:876..1025+ (Pelvetia canaliculata dioecious)
ACGCTTTGCGCAAATTCGGTTGCTGCAGCGAGCGATGCCCGTTCAATAGC
ATTGGGCGGTGCAGTAATCGCCAATGGCAAGGGTGTGCACGGAGCACTGG
CCAATCCGGCGTCCATGATGGCCATGCAGCGCCGCGGCGAAACCACGCAC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig100479:876..1025+

>mRNA_P-canaliculata_contig100479.109.1 ID=mRNA_P-canaliculata_contig100479.109.1|Name=mRNA_P-canaliculata_contig100479.109.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at P-canaliculata_contig100479:876..1025+ (Pelvetia canaliculata dioecious)
ACGCTTTGCGCAAATTCGGTTGCTGCAGCGAGCGATGCCCGTTCAATAGC
ATTGGGCGGTGCAGTAATCGCCAATGGCAAGGGTGTGCACGGAGCACTGG
CCAATCCGGCGTCCATGATGGCCATGCAGCGCCGCGGCGAAACCACGCAC
ACGCTTTGCGCAAATTCGGTTGCTGCAGCGAGCGATGCCCGTTCAATAGC
ATTGGGCGGTGCAGTAATCGCCAATGGCAAGGGTGTGCACGGAGCACTGG
CCAATCCGGCGTCCATGATGGCCATGCAGCGCCGCGGCGAAACCACGCAC
back to top