mRNA_P-canaliculata_contig100450.107.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100450.107.1
Unique NamemRNA_P-canaliculata_contig100450.107.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig100450.107.1 vs. uniprot
Match: A0A6B3LCC3_9BACT (Uncharacterized protein n=1 Tax=Sulfuriroseicoccus oceanibius TaxID=2707525 RepID=A0A6B3LCC3_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.260e-11
Identity = 63/221 (28.51%), Postives = 98/221 (44.34%), Query Frame = 1 
Query:   85 SKVKFILGVPEDFDPVKGCPVFVQWTTTDV-------KSNLKGAKNYRSSCNDKGWMLVSVD---GLP--DSGETWSNSVFYAGMKEFFEQLHAAYPSSTEWRVATGGFSGGAKICQWMGG--VMNELEGVNVMGYYIGGGNEVLFQYGIDDLGVSKKGYADAKAFVSSGDSDKFVSAHSRELVVEGCKEAGL-DVRDEVYTGGHRMNRDEFEKALDWFVE 702
            +++K  + +P+ FDP K  P  V W +  +       K N      +      +GW++V+ D   G P  +  E  S     A      E L  A+P    W+ A  G SGG K   +  G  ++N+L   NV G ++ G N+        +    K G    K ++S+G SD   +    E V    K     ++R E++ GGH + ++EF KAL WFVE
Sbjct:  136 TELKISIALPKGFDPTK--PQRVMWVSAPINNENERKKGNAGAMWAFAGPGTAEGWVVVAADTDMGNPRVEDNER-SKGTDLAVHTAAVEALTEAWPQFKTWQFACCGGSGGGKASFYRVGDLLVNDL---NVTGMFLAGCNQDCTADARAETRFKKSGLRKIKVWISNGRSDTISNVGHAESVAASMKGNRYGEIRLELFDGGHVIKKEEFVKALQWFVE 350
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100450.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6B3LCC3_9BACT1.260e-1128.51Uncharacterized protein n=1 Tax=Sulfuriroseicoccus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100450contigP-canaliculata_contig100450:2..706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.4
Seed ortholog evalue3.2e-10
Seed eggNOG ortholog452637.Oter_3771
KEGG koko:K06999
EggNOG free text desc.palmitoyl-(protein) hydrolase activity
EggNOG OGsCOG0400@1,COG0400@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons1
Model size705
Cds size705
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.9743009-CDS-P-canaliculata_contig100450:1..7061622815577.9743009-CDS-P-canaliculata_contig100450:1..706Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100450 2..706 +
1693494147.4374502-CDS-P-canaliculata_contig100450:1..7061693494147.4374502-CDS-P-canaliculata_contig100450:1..706Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100450 2..706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100450.107.1prot_P-canaliculata_contig100450.107.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100450 2..706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100450.107.1

>prot_P-canaliculata_contig100450.107.1 ID=prot_P-canaliculata_contig100450.107.1|Name=mRNA_P-canaliculata_contig100450.107.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=235bp
KGGEGWGTSFSSGYSGSWLRDLAEGHEVSKVKFILGVPEDFDPVKGCPVF
VQWTTTDVKSNLKGAKNYRSSCNDKGWMLVSVDGLPDSGETWSNSVFYAG
MKEFFEQLHAAYPSSTEWRVATGGFSGGAKICQWMGGVMNELEGVNVMGY
YIGGGNEVLFQYGIDDLGVSKKGYADAKAFVSSGDSDKFVSAHSRELVVE
GCKEAGLDVRDEVYTGGHRMNRDEFEKALDWFVE*
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mRNA from alignment at P-canaliculata_contig100450:2..706+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100450.107.1 ID=mRNA_P-canaliculata_contig100450.107.1|Name=mRNA_P-canaliculata_contig100450.107.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=705bp|location=Sequence derived from alignment at P-canaliculata_contig100450:2..706+ (Pelvetia canaliculata dioecious)
AAGGGCGGTGAGGGTTGGGGCACTTCTTTTTCTTCGGGCTACAGTGGGTC
TTGGCTGAGAGATCTTGCCGAGGGGCATGAGGTCTCGAAGGTGAAATTTA
TTCTAGGTGTTCCCGAGGATTTCGATCCCGTGAAAGGGTGTCCCGTTTTT
GTGCAATGGACGACTACGGACGTTAAAAGCAATTTGAAAGGAGCCAAGAA
TTATCGATCCAGTTGTAACGATAAGGGGTGGATGCTGGTCAGTGTCGATG
GCTTGCCGGATTCTGGCGAGACGTGGTCGAACTCGGTTTTCTATGCCGGG
ATGAAGGAGTTCTTCGAGCAGCTTCATGCGGCCTACCCTTCTTCTACCGA
ATGGCGTGTGGCCACCGGCGGCTTTTCGGGAGGAGCCAAGATTTGCCAAT
GGATGGGAGGCGTGATGAATGAGCTTGAGGGCGTGAATGTGATGGGTTAC
TACATCGGCGGCGGCAACGAGGTCCTATTTCAGTATGGCATAGATGATTT
AGGAGTTTCGAAAAAAGGCTATGCCGATGCCAAGGCTTTCGTCAGCAGTG
GAGATTCGGACAAGTTCGTCAGCGCCCACAGCCGGGAGCTCGTCGTTGAA
GGTTGCAAAGAAGCGGGGCTCGATGTTCGCGACGAGGTATATACAGGTGG
GCACCGCATGAACCGGGATGAATTTGAAAAGGCTTTGGATTGGTTCGTGG
AGTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig100450:2..706+

>mRNA_P-canaliculata_contig100450.107.1 ID=mRNA_P-canaliculata_contig100450.107.1|Name=mRNA_P-canaliculata_contig100450.107.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at P-canaliculata_contig100450:2..706+ (Pelvetia canaliculata dioecious)
AAGGGCGGTGAGGGTTGGGGCACTTCTTTTTCTTCGGGCTACAGTGGGTC
TTGGCTGAGAGATCTTGCCGAGGGGCATGAGGTCTCGAAGGTGAAATTTA
TTCTAGGTGTTCCCGAGGATTTCGATCCCGTGAAAGGGTGTCCCGTTTTT
GTGCAATGGACGACTACGGACGTTAAAAGCAATTTGAAAGGAGCCAAGAA
TTATCGATCCAGTTGTAACGATAAGGGGTGGATGCTGGTCAGTGTCGATG
GCTTGCCGGATTCTGGCGAGACGTGGTCGAACTCGGTTTTCTATGCCGGG
ATGAAGGAGTTCTTCGAGCAGCTTCATGCGGCCTACCCTTCTTCTACCGA
ATGGCGTGTGGCCACCGGCGGCTTTTCGGGAGGAGCCAAGATTTGCCAAT
GGATGGGAGGCGTGATGAATGAGCTTGAGGGCGTGAATGTGATGGGTTAC
TACATCGGCGGCGGCAACGAGGTCCTATTTCAGTATGGCATAGATGATTT
AGGAGTTTCGAAAAAAGGCTATGCCGATGCCAAGGCTTTCGTCAGCAGTG
GAGATTCGGACAAGTTCGTCAGCGCCCACAGCCGGGAGCTCGTCGTTGAA
GGTTGCAAAGAAGCGGGGCTCGATGTTCGCGACGAGGTATATACAGGTGG
GCACCGCATGAACCGGGATGAATTTGAAAAGGCTTTGGATTGGTTCGTGG
AGTAGAAGGGCGGTGAGGGTTGGGGCACTTCTTTTTCTTCGGGCTACAGT
GGGTCTTGGCTGAGAGATCTTGCCGAGGGGCATGAGGTCTCGAAGGTGAA
ATTTATTCTAGGTGTTCCCGAGGATTTCGATCCCGTGAAAGGGTGTCCCG
TTTTTGTGCAATGGACGACTACGGACGTTAAAAGCAATTTGAAAGGAGCC
AAGAATTATCGATCCAGTTGTAACGATAAGGGGTGGATGCTGGTCAGTGT
CGATGGCTTGCCGGATTCTGGCGAGACGTGGTCGAACTCGGTTTTCTATG
CCGGGATGAAGGAGTTCTTCGAGCAGCTTCATGCGGCCTACCCTTCTTCT
ACCGAATGGCGTGTGGCCACCGGCGGCTTTTCGGGAGGAGCCAAGATTTG
CCAATGGATGGGAGGCGTGATGAATGAGCTTGAGGGCGTGAATGTGATGG
GTTACTACATCGGCGGCGGCAACGAGGTCCTATTTCAGTATGGCATAGAT
GATTTAGGAGTTTCGAAAAAAGGCTATGCCGATGCCAAGGCTTTCGTCAG
CAGTGGAGATTCGGACAAGTTCGTCAGCGCCCACAGCCGGGAGCTCGTCG
TTGAAGGTTGCAAAGAAGCGGGGCTCGATGTTCGCGACGAGGTATATACA
GGTGGGCACCGCATGAACCGGGATGAATTTGAAAAGGCTTTGGATTGGTT
CGTGGAGTAG
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