mRNA_P-canaliculata_contig10030.88.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Match: D8LD31_ECTSI (Ankyrin repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD31_ECTSI) HSP 1 Score: 322 bits (825), Expect = 3.290e-104 Identity = 154/199 (77.39%), Postives = 168/199 (84.42%), Query Frame = 1
Query: 4 SAGDRRGEWPHKFKFLPQLD---RVCALCGKDFVRICTACGKCMECFRVGNKDCVDGADTSVPERPRSPPPPETSEERDWPEYPKTMTRNADGTNVLQKRMERAIYDAIRTGDTHPIVGLIRAGVSPNFKRPAGETCLHAAAYCGEMDLVKDLMGRNSDPTVKDSHGNLPVDLAAMQGKDEVVAYLQPLAPSSTAFTIA 591
S D RGEWPH+FKF PQL +VCA+CGKDFVRICTACGKCMECFR GN+DCV+GA + P R SPPP +ER+WPEYPKTMTRN DGT+VL+KRMERAIY+AIR GDT PIVGLIRAGVSPNFKRPAGETCLHAAAYCG +DLVKDL R +DP VKDSHGNLPVDLAAMQGKD VV +LQPLAPS T FTIA
Sbjct: 77 SRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAGNRDCVEGAVNNTPPRRLSPPPEALPDEREWPEYPKTMTRNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDAVVGFLQPLAPSKTPFTIA 275
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Match: A0A6H5KU86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU86_9PHAE) HSP 1 Score: 335 bits (860), Expect = 9.480e-101 Identity = 160/209 (76.56%), Postives = 176/209 (84.21%), Query Frame = 1
Query: 4 SAGDRRGEWPHKFKFLPQLD---RVCALCGKDFVRICTACGKCMECFRVGNKDCVDGADTSVPERPRSPPPPETSEERDWPEYPKTMTRNADGTNVLQKRMERAIYDAIRTGDTHPIVGLIRAGVSPNFKRPAGETCLHAAAYCGEMDLVKDLMGRNSDPTVKDSHGNLPVDLAAMQGKDEVVAYLQPLAPSSTAFTIAAHKRHRHKQQ 621
S D RGEWPH+FKF PQL +VCA+CGKDFVRICTACGKCMECFR G++DCV+GA + P R SPPP +ER+WPEYPKTMTRN DGT+VL+KRMERAIY+AIR GDT PIVGLIRAGVSPNFKRPAGETCLHAAAYCG +DLVKDL R +DP VKDSHGNLPVDLAAMQGKDEVV +LQPLAPS T FTIAAH+RHR Q
Sbjct: 788 SRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAGDRDCVEGAVNNTPPRRLSPPPEALPDEREWPEYPKTMTRNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSKTPFTIAAHQRHRRVSQ 996
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Match: A0A835YL10_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL10_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 4.870e-8 Identity = 60/223 (26.91%), Postives = 86/223 (38.57%), Query Frame = 1
Query: 34 HKFKFLPQLDRVCALCGKDFVRICTACGKCMECFR---VGNKDCVDGADT---SVPERPRSP------------------------PPPETSEERDWPEYPKTMTRNADGTN-----------------------VLQKRMERAIYDAIRTGDTHP----IVGLIRAGVSPNFKRPAGETCLHAAAYCGEMDLVKDLMGRNSDPTVKDSHGNLPVDLAAMQGK 531
H+F++ C LC VRIC+AC +C+ C+R G C G ++ S P S P PE + + W K G N LQ R++RAIY A + ++ L+R N++R GET LHAAAY G + + ++ +D DSHGN P+DLA G+
Sbjct: 700 HRFRYRNVTAPGCTLCELTHVRICSACSRCVCCYREERFGPACCETGDESGRWSPPTDASSXXXXXXXXXXXXXXXXXXXXXILRKPKPEIAGDA-WRPGGKRDAGGGGGGNDXXXXXXXXXXXXXXPAGAPKLHTLQGRVDRAIYAAFTSDGKEERFAALLALLRHSGLHNYRRQTGETALHAAAYHGALRAARAMLDGGADADASDSHGNTPLDLARQHGR 921
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Match: A0A672H3I0_SALFA (Uncharacterized protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672H3I0_SALFA) HSP 1 Score: 56.2 bits (134), Expect = 4.640e-6 Identity = 32/91 (35.16%), Postives = 46/91 (50.55%), Query Frame = 1
Query: 292 RMERAIYDAIRTGDTHPIVGLIRAGVSPNFK-RPAGETCLHAAAYCGEMDLVKDLMGRNSDPTVKDSHGNLPVDLAAMQGKDEVVAYLQPL 561
R R + G T L++ G PN R G T LH AA G +D V+ L+ +DP +D ++P DLAA G ++V ++LQ L
Sbjct: 36 RFGRTALQVMMMGSTPVAQVLLKHGADPNVADRSTGATPLHDAARTGFLDTVRLLVHFGADPRARDHANDVPADLAAQHGHEDVASFLQTL 126
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Match: A0A2E6T4H9_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E6T4H9_9BACT) HSP 1 Score: 59.7 bits (143), Expect = 8.030e-6 Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query: 271 GTNVLQKRMER--AIYDAIRTGDTHPIVGLIRAGVSPNFKRPAGETCLHAAAYCGEMDLVKDLMGRNSDP--TVK--DSHGNLPVDLAAMQGKDEVVAYL 552
G NV K ++ A+ +AI+ G+T L+ G SPN G TCLH AAY G++D+ K L+ N+D TVK G P+D AAM GK + + L
Sbjct: 398 GANVHAKGVKERDALMEAIKIGNTEVAALLLDNGASPNSVDEDGVTCLHIAAYRGQVDICKKLLAGNADKDATVKVGPKKGFKPID-AAMDGKHQEIINL 496 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10030.88.1 >prot_P-canaliculata_contig10030.88.1 ID=prot_P-canaliculata_contig10030.88.1|Name=mRNA_P-canaliculata_contig10030.88.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=333bp MECFRVGNKDCVDGADTSVPERPRSPPPPETSEERDWPEYPKTMTRNADGback to top mRNA from alignment at P-canaliculata_contig10030:843..3548- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10030.88.1 ID=mRNA_P-canaliculata_contig10030.88.1|Name=mRNA_P-canaliculata_contig10030.88.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2706bp|location=Sequence derived from alignment at P-canaliculata_contig10030:843..3548- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10030:843..3548- >mRNA_P-canaliculata_contig10030.88.1 ID=mRNA_P-canaliculata_contig10030.88.1|Name=mRNA_P-canaliculata_contig10030.88.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1998bp|location=Sequence derived from alignment at P-canaliculata_contig10030:843..3548- (Pelvetia canaliculata dioecious)back to top |