mRNA_P-canaliculata_contig100273.81.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100273.81.1
Unique NamemRNA_P-canaliculata_contig100273.81.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig100273.81.1 vs. uniprot
Match: UPI0019154D0D (HAMP domain-containing protein n=1 Tax=Psychromonas sp. L1A2 TaxID=2686356 RepID=UPI0019154D0D)

HSP 1 Score: 426 bits (1095), Expect = 1.390e-146
Identity = 209/256 (81.64%), Postives = 231/256 (90.23%), Query Frame = 1
Query:    4 KLSLRSVLIFPYVILIICLAIAIGFLSYGAGSHAVQTVSNHLLIETVNRISQAIDRHVVGSVATLEVAFPNGMLVDSDIETDIEAIRSRFWSASSLHLDPNNYVYYGNQAGQAVGLYRYSADEGELRVKYKPEEHRKFYGISGINGVPTLFSTEEENFDPRMRPWFHAGLSNNNDTWTSVYIDFRTHDLIATRARQVLGYDKKFEGVVATDMSLKSLNDFVSHLNISTNGIAFIIEPDGLLIASSVSPNIQRDKSG 771
            KLSLRSVLIFPYV+L++CLA+AIG LSY AG HAVQTVS HLL ETVNRISQAIDRHVVGSVATLEVAFP+GML+D+DI++++  IR RFWSASSLHLDPNNYVYYGN+AGQA+GLYRYS  +GELRVKY PEEHRKFY ++GIN  PTL S EE+NFDPR+RPWFHAG  NNNDTWTSVYIDFRTHDLIATRARQV+G D  FEGVVATDMSLKSLNDFVS+LNIS N IAFIIEPDG LIASSVSPNI+R+K G
Sbjct:    3 KLSLRSVLIFPYVVLVVCLALAIGSLSYSAGYHAVQTVSKHLLEETVNRISQAIDRHVVGSVATLEVAFPDGMLMDADIKSNLNNIRDRFWSASSLHLDPNNYVYYGNKAGQAIGLYRYSIKKGELRVKYTPEEHRKFYELNGINSTPTLLSIEEKNFDPRVRPWFHAGSRNNNDTWTSVYIDFRTHDLIATRARQVIGRDGTFEGVVATDMSLKSLNDFVSNLNISENAIAFIIEPDGQLIASSVSPNIKRNKDG 258          
BLAST of mRNA_P-canaliculata_contig100273.81.1 vs. uniprot
Match: UPI000422E2E4 (sensor domain-containing diguanylate cyclase n=1 Tax=Psychromonas sp. SP041 TaxID=1365007 RepID=UPI000422E2E4)

HSP 1 Score: 422 bits (1085), Expect = 3.160e-143
Identity = 208/256 (81.25%), Postives = 231/256 (90.23%), Query Frame = 1
Query:    4 KLSLRSVLIFPYVILIICLAIAIGFLSYGAGSHAVQTVSNHLLIETVNRISQAIDRHVVGSVATLEVAFPNGMLVDSDIETDIEAIRSRFWSASSLHLDPNNYVYYGNQAGQAVGLYRYSADEGELRVKYKPEEHRKFYGISGINGVPTLFSTEEENFDPRMRPWFHAGLSNNNDTWTSVYIDFRTHDLIATRARQVLGYDKKFEGVVATDMSLKSLNDFVSHLNISTNGIAFIIEPDGLLIASSVSPNIQRDKSG 771
            KLSLRSVLIFPYV+L++ LA+AIG LSY AG HAVQTVSNHLL ETV+RISQAIDRHVVGSVATLEVAFP+GML+D+DI++++  IR RFWSASSLHLDPNNYVYYGN+AGQA+GLYRYS  +GELRVKY PEEHRKFY ++GIN  PTL S EE+NFDPR+RPWFHAG  NNNDTWTSVYIDFRTHDLIATRARQV+G D  FEGVVATDMSLKSLNDFVS+LNIS N IAFIIEPDG LIASSVSPNI+R+K G
Sbjct:    3 KLSLRSVLIFPYVVLVVFLALAIGSLSYSAGYHAVQTVSNHLLEETVSRISQAIDRHVVGSVATLEVAFPDGMLMDADIKSNLNNIRDRFWSASSLHLDPNNYVYYGNKAGQAIGLYRYSIKKGELRVKYTPEEHRKFYELNGINSTPTLLSIEEKNFDPRVRPWFHAGSRNNNDTWTSVYIDFRTHDLIATRARQVIGRDGMFEGVVATDMSLKSLNDFVSNLNISENAIAFIIEPDGQLIASSVSPNIKRNKDG 258          
BLAST of mRNA_P-canaliculata_contig100273.81.1 vs. uniprot
Match: UPI00174EB934 (diguanylate cyclase n=1 Tax=Marinomonas colpomeniae TaxID=2774408 RepID=UPI00174EB934)

HSP 1 Score: 384 bits (985), Expect = 5.200e-128
Identity = 188/256 (73.44%), Postives = 220/256 (85.94%), Query Frame = 1
Query:    4 KLSLRSVLIFPYVILIICLAIAIGFLSYGAGSHAVQTVSNHLLIETVNRISQAIDRHVVGSVATLEVAFPNGMLVDSDIETDIEAIRSRFWSASSLHLDPNNYVYYGNQAGQAVGLYRYSADEGELRVKYKPEEHRKFYGISGINGVPTLFSTEEENFDPRMRPWFHAGLSNNNDTWTSVYIDFRTHDLIATRARQVLGYDKKFEGVVATDMSLKSLNDFVSHLNISTNGIAFIIEPDGLLIASSVSPNIQRDKSG 771
            KLSLR+VLIFPY+ LI+ LA+AIG LSY  G  AVQTVSNHLL ETV+R+SQAIDRHVVGSVATLE AFP GML + DI+ +++ +R+R W+ASSL+LDPNNYVYYGN+AGQA+GLYR+S D GELRVK+ P+EHR FY I GING P L S EE+NFDPR+RPWF AG  N +D WTSVYIDFRTH+L+ATRARQV G + +FEGVVATDMSLKSLNDFVS+LNIS NGIAFIIEPDG+LIASS S NIQ+D++G
Sbjct:    3 KLSLRAVLIFPYIALIVFLALAIGLLSYKTGHRAVQTVSNHLLEETVSRLSQAIDRHVVGSVATLEAAFPAGMLAEEDIKDNLDIVRTRLWTASSLYLDPNNYVYYGNKAGQAIGLYRHSVDSGELRVKFTPDEHRSFYQIDGINGEPKLSSIEEKNFDPRVRPWFQAGWKNPDDIWTSVYIDFRTHNLVATRARQVHGINHEFEGVVATDMSLKSLNDFVSNLNISENGIAFIIEPDGMLIASSSSSNIQQDENG 258          
BLAST of mRNA_P-canaliculata_contig100273.81.1 vs. uniprot
Match: UPI001748C359 (diguanylate cyclase n=1 Tax=Marinomonas colpomeniae TaxID=2774408 RepID=UPI001748C359)

HSP 1 Score: 361 bits (926), Expect = 3.250e-119
Identity = 178/256 (69.53%), Postives = 209/256 (81.64%), Query Frame = 1
Query:    4 KLSLRSVLIFPYVILIICLAIAIGFLSYGAGSHAVQTVSNHLLIETVNRISQAIDRHVVGSVATLEVAFPNGMLVDSDIETDIEAIRSRFWSASSLHLDPNNYVYYGNQAGQAVGLYRYSADEGELRVKYKPEEHRKFYGISGINGVPTLFSTEEENFDPRMRPWFHAGLSNNNDTWTSVYIDFRTHDLIATRARQVLGYDKKFEGVVATDMSLKSLNDFVSHLNISTNGIAFIIEPDGLLIASSVSPNIQRDKSG 771
            KLSLRS LI PYV LIICLA+AIG LSY AGSHAVQTVSNHLL ETV+R+SQAIDRHVVGSVATLE AFP G+ V  DI  + EAIR+R W+ASSL+LDPNNYVYYGN AGQ +GLYR S   GELRVK++P EHR FY + GING P   S EE+NFDPR+RPWF AG  N +D WTSVYIDF+T  L+ATRAR++    ++FEGVVATDMSL+SLNDF+ +LNIS N IAFI+E +G+LIASS S NI++D++G
Sbjct:    3 KLSLRSALILPYVALIICLALAIGLLSYNAGSHAVQTVSNHLLKETVSRLSQAIDRHVVGSVATLETAFPEGIPVQKDIRNEFEAIRTRLWTASSLYLDPNNYVYYGNVAGQGIGLYRDSISSGELRVKFEPNEHRTFYKVDGINGEPQFSSVEEKNFDPRIRPWFQAGWENVDDIWTSVYIDFKTQHLVATRARRIESEYEEFEGVVATDMSLRSLNDFIGNLNISENAIAFIVESNGMLIASSHSSNIRQDENG 258          
BLAST of mRNA_P-canaliculata_contig100273.81.1 vs. uniprot
Match: A0A166LGX5_9GAMM (Uncharacterized protein n=1 Tax=Marinomonas sp. TW1 TaxID=1561203 RepID=A0A166LGX5_9GAMM)

HSP 1 Score: 357 bits (917), Expect = 7.180e-118
Identity = 178/257 (69.26%), Postives = 211/257 (82.10%), Query Frame = 1
Query:    4 KLSLRSVLIFPYVILIICLAIAIGFLSYGAGSHAVQTVSNHLLIETVNRISQAIDRHVVGSVATLEVAFPNGMLVDSDIETDIEAIRSRFWSASSLHLDPNNYVYYGNQAGQAVGLYRYSADEGELRVKYKPEEHRKFYGISGINGVPTLFSTEEENFDPRMRPWFHAGLSNNNDTWTSVYIDFRTHDLIATRARQVLGYDKKFEGVVATDMSLKSLNDFVSHLNISTNGIAFIIEPDGLLIASSVSPNIQRDKSGK 774
            K SLRSVLI PYV L+ICLA+AIG LSY AGSHAVQTVS++LL ETV+R+SQAIDRHVVGSVA LE AFP G+ V  DI  D E IR+R W+ASSL+LDPNNYVYYGN+AGQA+GLYR S D GELRVK+ PEE R FY I GIN  P   S E++ FDPR+RPWF AG SN ND WTSVYIDFRT++L+ATRAR++   ++ FEGVVATD+SL+SLNDF++ LNIS N IAFI+E +G+LIASS SPNI+RD +G+
Sbjct:    3 KFSLRSVLILPYVALVICLALAIGLLSYNAGSHAVQTVSDNLLKETVSRLSQAIDRHVVGSVAVLETAFPAGIAVQKDIRKDFENIRTRLWTASSLYLDPNNYVYYGNRAGQAIGLYRDSIDSGELRVKFVPEELRNFYAIDGINSEPLFSSVEDKIFDPRVRPWFQAGWSNVNDIWTSVYIDFRTNNLVATRARRIEDENEAFEGVVATDISLESLNDFIASLNISENAIAFIVESNGMLIASSHSPNIKRDDNGR 259          
BLAST of mRNA_P-canaliculata_contig100273.81.1 vs. uniprot
Match: UPI0018F158C2 (sensor domain-containing diguanylate cyclase n=1 Tax=Marinomonas sp. C1424 TaxID=2795388 RepID=UPI0018F158C2)

HSP 1 Score: 357 bits (917), Expect = 7.390e-118
Identity = 175/256 (68.36%), Postives = 213/256 (83.20%), Query Frame = 1
Query:    4 KLSLRSVLIFPYVILIICLAIAIGFLSYGAGSHAVQTVSNHLLIETVNRISQAIDRHVVGSVATLEVAFPNGMLVDSDIETDIEAIRSRFWSASSLHLDPNNYVYYGNQAGQAVGLYRYSADEGELRVKYKPEEHRKFYGISGINGVPTLFSTEEENFDPRMRPWFHAGLSNNNDTWTSVYIDFRTHDLIATRARQVLGYDKKFEGVVATDMSLKSLNDFVSHLNISTNGIAFIIEPDGLLIASSVSPNIQRDKSG 771
            KLSLRSVLIFPYV LIICLA+AIG LSY  GSHAV+TVS+HLL ETV+R+SQAIDRHVVGSVA LE AFP G+ V  DI+TD+E IR+R W ASSL+LDPNNYVYYGN+AGQA+GL+R S D GELRVK+ P+EHR FY ++GI+  P     E++NFDPR+RPWF AG ++ ND WTSVYIDF TH+L+ATRAR++   + +FEGVVATDMSL+SLNDF+ +++IS N I+FIIEP+G+LIASS SPNI  D +G
Sbjct:    3 KLSLRSVLIFPYVALIICLALAIGLLSYNTGSHAVKTVSDHLLKETVSRLSQAIDRHVVGSVAALETAFPAGIPVSKDIQTDLEQIRTRLWMASSLYLDPNNYVYYGNRAGQAIGLFRKSIDSGELRVKFDPDEHRTFYKVNGIDSEPEFSLIEDKNFDPRVRPWFQAGWNSLNDIWTSVYIDFGTHNLVATRARRIQSENGEFEGVVATDMSLQSLNDFLGNIDISENAISFIIEPNGMLIASSHSPNIITDDNG 258          
BLAST of mRNA_P-canaliculata_contig100273.81.1 vs. uniprot
Match: A0A1M6FLC9_MALRU (Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Malonomonas rubra DSM 5091 TaxID=1122189 RepID=A0A1M6FLC9_MALRU)

HSP 1 Score: 345 bits (884), Expect = 5.980e-113
Identity = 174/254 (68.50%), Postives = 203/254 (79.92%), Query Frame = 1
Query:   10 SLRSVLIFPYVILIICLAIAIGFLSYGAGSHAVQTVSNHLLIETVNRISQAIDRHVVGSVATLEVAFPNGMLVDSDIETDIEAIRSRFWSASSLHLDPNNYVYYGNQAGQAVGLYRYSADEGELRVKYKPEEHRKFYGISGINGVPTLFSTEEENFDPRMRPWFHAGLSNNNDTWTSVYIDFRTHDLIATRARQVLGYDKKFEGVVATDMSLKSLNDFVSHLNISTNGIAFIIEPDGLLIASSVSPNIQRDKSG 771
            SLR+VLIFPYV L+I LA+AIG LSY  GS AV+TV+ HLL ETVNRI QAI+RHVVGSVATLE AFPNGML   +IETD + +R+RFW A+SLH+DPNNYVYYGN  GQA+GLYR S +EGELRVKY PEEHRK Y I GING+P   STE   FDPR RPWF A  S++ D WTSVYIDF T DL+ATRAR+VL  + + +GVVATDM L +LNDFV  L+IS NG AFIIEP+GLLIASS SPN+++ + G
Sbjct:    5 SLRTVLIFPYVTLVIILALAIGALSYQTGSQAVRTVAEHLLEETVNRIGQAIERHVVGSVATLEAAFPNGMLAPKNIETDFDDMRTRFWIATSLHIDPNNYVYYGNLDGQAIGLYRRSFEEGELRVKYFPEEHRKRYRIDGINGIPVFESTEAALFDPRHRPWFQAAQSSDEDIWTSVYIDFGTQDLVATRARRVLDKNGELQGVVATDMPLTALNDFVGTLDISPNGTAFIIEPNGLLIASSSSPNVKQLEDG 258          
BLAST of mRNA_P-canaliculata_contig100273.81.1 vs. uniprot
Match: A0A4U0ZPW1_9DELT (Diguanylate cyclase n=1 Tax=Desulforhopalus sp. IMCC35007 TaxID=2569543 RepID=A0A4U0ZPW1_9DELT)

HSP 1 Score: 344 bits (883), Expect = 1.000e-112
Identity = 172/256 (67.19%), Postives = 203/256 (79.30%), Query Frame = 1
Query:    4 KLSLRSVLIFPYVILIICLAIAIGFLSYGAGSHAVQTVSNHLLIETVNRISQAIDRHVVGSVATLEVAFPNGMLVDSDIETDIEAIRSRFWSASSLHLDPNNYVYYGNQAGQAVGLYRYSADEGELRVKYKPEEHRKFYGISGINGVPTLFSTEEENFDPRMRPWFHAGLSNNNDTWTSVYIDFRTHDLIATRARQVLGYDKKFEGVVATDMSLKSLNDFVSHLNISTNGIAFIIEPDGLLIASSVSPNIQRDKSG 771
            K SLRSVLI PY  L++ LA+AIG LSY AG  AV TVS+HLL ETV+RI QAIDRHVVGSVATLE AFPNGML    IE D   IR+RFW A+SLH+DPNNYVYYGN+ GQA+GLYR+S + GELRVKY  E+HRK+Y + GING      TE + FDPR RPW+ AG + N DTWTSVYIDF T DL+ATRARQVL ++ + EGVVATDMSL++LNDFV+HL IS +G+AFI+E DG LIASS SPN+++DK G
Sbjct:    3 KASLRSVLIVPYFTLVVVLAVAIGGLSYVAGRQAVLTVSDHLLKETVSRIGQAIDRHVVGSVATLEAAFPNGMLAPHSIEEDFANIRTRFWIATSLHIDPNNYVYYGNRTGQAIGLYRHSYESGELRVKYTAEQHRKWYRLDGINGELQYSFTETKLFDPRNRPWYKAGQNTNQDTWTSVYIDFGTQDLVATRARQVLDHNGEAEGVVATDMSLRALNDFVTHLEISPSGVAFILESDGNLIASSCSPNVKKDKDG 258          
BLAST of mRNA_P-canaliculata_contig100273.81.1 vs. uniprot
Match: A0A4U1AMC5_9DELT (Diguanylate cyclase n=1 Tax=Desulfopila sp. IMCC35006 TaxID=2569542 RepID=A0A4U1AMC5_9DELT)

HSP 1 Score: 340 bits (873), Expect = 3.030e-111
Identity = 169/255 (66.27%), Postives = 203/255 (79.61%), Query Frame = 1
Query:   10 SLRSVLIFPYVILIICLAIAIGFLSYGAGSHAVQTVSNHLLIETVNRISQAIDRHVVGSVATLEVAFPNGMLVDSDIETDIEAIRSRFWSASSLHLDPNNYVYYGNQAGQAVGLYRYSADEGELRVKYKPEEHRKFYGISGINGVPTLFSTEEENFDPRMRPWFHAGLSNNNDTWTSVYIDFRTHDLIATRARQVLGYDKKFEGVVATDMSLKSLNDFVSHLNISTNGIAFIIEPDGLLIASSVSPNIQRDKSGK 774
            SLRSVLIFPYV L+I LA+AIG LSY  G  AV TVS HLL ETV+RISQA+DRHVVGSVATLE AFPNGML    IE+D   +R+RFW A+SLH+DPNNYVYYGN++GQA+GL+R+S DEGELR+KY PEEHR  Y I GI+G       E++ FDPR RPW+ A  +  +DTWTSVYIDF THDL+ATR+R+VL   ++ EGVVATDM L++LNDFVS L IS NG+AFI EPDG LIASS SPNI+++ +G+
Sbjct:    5 SLRSVLIFPYVALVIALAVAIGTLSYFTGGQAVLTVSEHLLRETVSRISQAVDRHVVGSVATLEAAFPNGMLAPVSIESDFINMRTRFWIATSLHIDPNNYVYYGNRSGQAMGLFRHSLDEGELRIKYTPEEHRSIYQIEGIDGEMRSRKIEKQLFDPRQRPWYQAAQTAIHDTWTSVYIDFGTHDLVATRSRKVLNNRQEIEGVVATDMPLRALNDFVSSLKISPNGVAFIFEPDGNLIASSCSPNIRQNNAGE 259          
BLAST of mRNA_P-canaliculata_contig100273.81.1 vs. uniprot
Match: A0A3Q9BPA7_9BURK (Sensor domain-containing diguanylate cyclase n=1 Tax=Undibacterium parvum TaxID=401471 RepID=A0A3Q9BPA7_9BURK)

HSP 1 Score: 329 bits (843), Expect = 1.200e-106
Identity = 164/254 (64.57%), Postives = 198/254 (77.95%), Query Frame = 1
Query:   10 SLRSVLIFPYVILIICLAIAIGFLSYGAGSHAVQTVSNHLLIETVNRISQAIDRHVVGSVATLEVAFPNGMLVDSDIETDIEAIRSRFWSASSLHLDPNNYVYYGNQAGQAVGLYRYSADEGELRVKYKPEEHRKFYGISGINGVPTLFSTEEENFDPRMRPWFHAGLSNNNDTWTSVYIDFRTHDLIATRARQVLGYDKKFEGVVATDMSLKSLNDFVSHLNISTNGIAFIIEPDGLLIASSVSPNIQRDKSG 771
            SLR++LI PYV L++ LA AIG+LSY AG  AV TVS+HLL+ET  RI QAIDRH+VGS ATLE AFPNGML  +DI+ D+  +RSRFW A+SLH+DPNNYVYYGN AGQA+GLYR+S +EGELR+K KPEE+R  Y   GI+G     S EE+ FDPR RPW+ AG +  NDTWTSVYIDF T DL+ATRAR+V   + K  GVVATDMSL+SLNDFV +L +S +G+AFIIEP+G LIA+S  PN+Q  K G
Sbjct:   12 SLRTILIVPYVALVLVLASAIGWLSYRAGDSAVLTVSDHLLLETAERIGQAIDRHLVGSGATLEAAFPNGMLAQADIDKDLVNLRSRFWIATSLHIDPNNYVYYGNTAGQAIGLYRHSLEEGELRIKTKPEENRIRYRFKGIDGPLQFHSKEEKLFDPRSRPWYTAGANAKNDTWTSVYIDFGTQDLVATRARKVSAANGKLAGVVATDMSLRSLNDFVRNLKMSQHGLAFIIEPNGDLIAASSGPNVQHSKDG 265          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100273.81.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019154D0D1.390e-14681.64HAMP domain-containing protein n=1 Tax=Psychromona... [more]
UPI000422E2E43.160e-14381.25sensor domain-containing diguanylate cyclase n=1 T... [more]
UPI00174EB9345.200e-12873.44diguanylate cyclase n=1 Tax=Marinomonas colpomenia... [more]
UPI001748C3593.250e-11969.53diguanylate cyclase n=1 Tax=Marinomonas colpomenia... [more]
A0A166LGX5_9GAMM7.180e-11869.26Uncharacterized protein n=1 Tax=Marinomonas sp. TW... [more]
UPI0018F158C27.390e-11868.36sensor domain-containing diguanylate cyclase n=1 T... [more]
A0A1M6FLC9_MALRU5.980e-11368.50Diguanylate cyclase (GGDEF) domain-containing prot... [more]
A0A4U0ZPW1_9DELT1.000e-11267.19Diguanylate cyclase n=1 Tax=Desulforhopalus sp. IM... [more]
A0A4U1AMC5_9DELT3.030e-11166.27Diguanylate cyclase n=1 Tax=Desulfopila sp. IMCC35... [more]
A0A3Q9BPA7_9BURK1.200e-10664.57Sensor domain-containing diguanylate cyclase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100273contigP-canaliculata_contig100273:258..1031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score308.1
Seed ortholog evalue3.8e-81
Seed eggNOG ortholog497321.C664_04991
KEGG rclassRC02795
KEGG koko:K02342,ko:K21021
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko02025,ko03030,ko03430,ko03440,map00230,map00240,map01100,map02025,map03030,map03430,map03440
KEGG ModuleM00260
EggNOG free text desc.COG0840 Methyl-accepting chemotaxis protein
EggNOG OGs1QYKP@1224,2WHG8@28216,COG5000@1,COG5000@2,COG5001@1,COG5001@2
EC2.7.7.65,2.7.7.7
COG Functional cat.T
Best tax levelBetaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categorysignal anchor
Exons1
Model size774
Cds size774
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.6116116-CDS-P-canaliculata_contig100273:257..10311622815575.6116116-CDS-P-canaliculata_contig100273:257..1031Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100273 258..1031 +
1693494145.9222522-CDS-P-canaliculata_contig100273:257..10311693494145.9222522-CDS-P-canaliculata_contig100273:257..1031Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100273 258..1031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100273.81.1prot_P-canaliculata_contig100273.81.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100273 258..1031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100273.81.1

>prot_P-canaliculata_contig100273.81.1 ID=prot_P-canaliculata_contig100273.81.1|Name=mRNA_P-canaliculata_contig100273.81.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=258bp
MKLSLRSVLIFPYVILIICLAIAIGFLSYGAGSHAVQTVSNHLLIETVNR
ISQAIDRHVVGSVATLEVAFPNGMLVDSDIETDIEAIRSRFWSASSLHLD
PNNYVYYGNQAGQAVGLYRYSADEGELRVKYKPEEHRKFYGISGINGVPT
LFSTEEENFDPRMRPWFHAGLSNNNDTWTSVYIDFRTHDLIATRARQVLG
YDKKFEGVVATDMSLKSLNDFVSHLNISTNGIAFIIEPDGLLIASSVSPN
IQRDKSGK
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mRNA from alignment at P-canaliculata_contig100273:258..1031+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100273.81.1 ID=mRNA_P-canaliculata_contig100273.81.1|Name=mRNA_P-canaliculata_contig100273.81.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=774bp|location=Sequence derived from alignment at P-canaliculata_contig100273:258..1031+ (Pelvetia canaliculata dioecious)
ATGAAATTATCCCTTCGTTCAGTACTTATTTTCCCCTATGTAATATTAAT TATTTGTTTGGCTATTGCCATTGGATTTCTTTCCTATGGAGCAGGCTCTC ACGCAGTGCAAACTGTCTCTAATCACCTGCTAATAGAAACGGTAAACCGT ATTAGTCAAGCGATCGATAGGCATGTCGTCGGCTCTGTCGCAACCCTAGA AGTTGCTTTCCCCAATGGTATGTTAGTTGACTCTGATATTGAAACAGATA TAGAAGCAATTAGAAGTCGATTTTGGAGCGCTTCGTCACTTCATTTAGAT CCAAATAATTATGTTTACTATGGCAACCAAGCTGGTCAAGCAGTCGGCCT ATACCGATATTCTGCTGATGAAGGTGAATTAAGAGTTAAATATAAACCTG AAGAGCATAGAAAATTTTATGGAATAAGCGGCATAAATGGGGTTCCAACT CTATTTTCTACTGAAGAAGAAAATTTTGATCCACGAATGAGGCCATGGTT TCACGCAGGCTTAAGTAATAACAATGATACTTGGACTTCTGTATATATTG ATTTTAGAACCCATGATTTGATTGCAACACGCGCTCGTCAAGTATTAGGC TATGACAAAAAATTTGAAGGTGTGGTCGCTACCGATATGTCATTAAAATC ATTAAATGACTTTGTTAGTCATCTTAATATTTCGACTAATGGTATCGCAT TTATTATTGAGCCTGATGGACTCTTGATTGCGTCTTCAGTGAGTCCAAAT ATTCAACGCGACAAAAGTGGAAAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig100273:258..1031+

>mRNA_P-canaliculata_contig100273.81.1 ID=mRNA_P-canaliculata_contig100273.81.1|Name=mRNA_P-canaliculata_contig100273.81.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1548bp|location=Sequence derived from alignment at P-canaliculata_contig100273:258..1031+ (Pelvetia canaliculata dioecious)
ATGAAATTATCCCTTCGTTCAGTACTTATTTTCCCCTATGTAATATTAAT
TATTTGTTTGGCTATTGCCATTGGATTTCTTTCCTATGGAGCAGGCTCTC
ACGCAGTGCAAACTGTCTCTAATCACCTGCTAATAGAAACGGTAAACCGT
ATTAGTCAAGCGATCGATAGGCATGTCGTCGGCTCTGTCGCAACCCTAGA
AGTTGCTTTCCCCAATGGTATGTTAGTTGACTCTGATATTGAAACAGATA
TAGAAGCAATTAGAAGTCGATTTTGGAGCGCTTCGTCACTTCATTTAGAT
CCAAATAATTATGTTTACTATGGCAACCAAGCTGGTCAAGCAGTCGGCCT
ATACCGATATTCTGCTGATGAAGGTGAATTAAGAGTTAAATATAAACCTG
AAGAGCATAGAAAATTTTATGGAATAAGCGGCATAAATGGGGTTCCAACT
CTATTTTCTACTGAAGAAGAAAATTTTGATCCACGAATGAGGCCATGGTT
TCACGCAGGCTTAAGTAATAACAATGATACTTGGACTTCTGTATATATTG
ATTTTAGAACCCATGATTTGATTGCAACACGCGCTCGTCAAGTATTAGGC
TATGACAAAAAATTTGAAGGTGTGGTCGCTACCGATATGTCATTAAAATC
ATTAAATGACTTTGTTAGTCATCTTAATATTTCGACTAATGGTATCGCAT
TTATTATTGAGCCTGATGGACTCTTGATTGCGTCTTCAGTGAGTCCAAAT
ATTCAACGCGACAAAAGTGGAAAAATGAAATTATCCCTTCGTTCAGTACT
TATTTTCCCCTATGTAATATTAATTATTTGTTTGGCTATTGCCATTGGAT
TTCTTTCCTATGGAGCAGGCTCTCACGCAGTGCAAACTGTCTCTAATCAC
CTGCTAATAGAAACGGTAAACCGTATTAGTCAAGCGATCGATAGGCATGT
CGTCGGCTCTGTCGCAACCCTAGAAGTTGCTTTCCCCAATGGTATGTTAG
TTGACTCTGATATTGAAACAGATATAGAAGCAATTAGAAGTCGATTTTGG
AGCGCTTCGTCACTTCATTTAGATCCAAATAATTATGTTTACTATGGCAA
CCAAGCTGGTCAAGCAGTCGGCCTATACCGATATTCTGCTGATGAAGGTG
AATTAAGAGTTAAATATAAACCTGAAGAGCATAGAAAATTTTATGGAATA
AGCGGCATAAATGGGGTTCCAACTCTATTTTCTACTGAAGAAGAAAATTT
TGATCCACGAATGAGGCCATGGTTTCACGCAGGCTTAAGTAATAACAATG
ATACTTGGACTTCTGTATATATTGATTTTAGAACCCATGATTTGATTGCA
ACACGCGCTCGTCAAGTATTAGGCTATGACAAAAAATTTGAAGGTGTGGT
CGCTACCGATATGTCATTAAAATCATTAAATGACTTTGTTAGTCATCTTA
ATATTTCGACTAATGGTATCGCATTTATTATTGAGCCTGATGGACTCTTG
ATTGCGTCTTCAGTGAGTCCAAATATTCAACGCGACAAAAGTGGAAAA
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