mRNA_P-canaliculata_contig105433.750.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig105433.750.1
Unique NamemRNA_P-canaliculata_contig105433.750.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: A0A8J7QI31_9BACT (Uncharacterized protein n=1 Tax=Acanthopleuribacter pedis TaxID=442870 RepID=A0A8J7QI31_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 1.320e-8
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 FTATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIRRGDSVIDLPLSITV 210
            FTAT Q I  G+++ L WS+ DAD+V++ P+VG VA  GS +VSP+ +T YTLT       I   +++ V
Sbjct:  198 FTATPQTIDQGDSSRLAWSVTDADSVSISPTVGTVATSGSFDVSPSQSTVYTLTATNDAGSIQRSVTVNV 267          
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: X1PKJ5_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1PKJ5_9ZZZZ)

HSP 1 Score: 52.8 bits (125), Expect = 4.670e-7
Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    1 FTATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIRRGD 177
            FTA  + I  GE++ L W++ +A  VT+   +G V+  G+ EVSP +TT YTLT +  D
Sbjct:   53 FTANPESINRGESSTLSWNVTNATTVTINQGIGIVSAKGTTEVSPEETTTYTLTAKNND 111          
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: UPI001A9AF9A0 (hypothetical protein n=1 Tax=Desulfonema magnum TaxID=45655 RepID=UPI001A9AF9A0)

HSP 1 Score: 53.9 bits (128), Expect = 1.040e-6
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 1
Query:    1 FTATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIRRGDSVIDLPLSITV 210
            F+A+   ++ GE  VL W    AD+ TL P +GD++  G+ EVSP +TT YTLT       +   +++ V
Sbjct:  407 FSASATSVSPGETVVLSWDTSGADSRTLGPGIGDISESGTAEVSPEETTTYTLTASGPGGTVTAAVTVAV 476          
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: A0A350AJW9_9CHLR (PKD domain-containing protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A350AJW9_9CHLR)

HSP 1 Score: 53.5 bits (127), Expect = 1.380e-6
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 1
Query:    1 FTATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIRRGDSVIDLPLSITV 210
            F    + I IG++  L W++  A +V++ P +G+VA+ G+R VSPT TT YTLT       I   L + V
Sbjct:  127 FDTDTKSIIIGKSATLNWNVTGATSVSISPDIGNVASTGTRIVSPTSTTIYTLTATNTVGTISAELQVLV 196          
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: A0A2N6BU30_9DELT (Sugar-binding protein (Fragment) n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A2N6BU30_9DELT)

HSP 1 Score: 52.8 bits (125), Expect = 2.720e-6
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    4 TATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIRR--GDSVIDLPLSIT 207
            TA  + I +GE++ L WS   AD   +EP +G V   GS +VSPT+TT YT+T     G +  D+ +++T
Sbjct:  216 TADPEAILLGESSTLTWSSTHADTCMIEPGIGSVDVSGSTQVSPTETTTYTITATGPGGTAASDVTITVT 285          
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: A0A2E5FMP5_9BACT (PG_binding_1 domain-containing protein n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A2E5FMP5_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 5.020e-6
Identity = 22/46 (47.83%), Postives = 35/46 (76.09%), Query Frame = 1
Query:   31 GEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIR 168
            G++T L+WS  +A++ +L+  VGDV+  GSREVSPT +T Y +T++
Sbjct:   55 GKSTTLKWSSENAESASLDQGVGDVSTSGSREVSPTQSTTYQITVK 100          
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: UPI0019CD745B (OmpA family protein n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=UPI0019CD745B)

HSP 1 Score: 52.0 bits (123), Expect = 5.030e-6
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1
Query:   22 ITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIRRGDSVIDLPLSITV 210
            IT GEA  L +S  +AD+VT+ P++G V   GSR V+PT TT YTLT           +++TV
Sbjct:  696 ITAGEAATLTYSTANADSVTISPNIGAVDLSGSRVVTPTQTTTYTLTATNATGPATCNVTVTV 758          
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: A0A8A4TDA5_9BACT (BACON domain-containing protein n=1 Tax=Sulfidibacter corallicola TaxID=2818388 RepID=A0A8A4TDA5_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 5.040e-6
Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 1
Query:    1 FTATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIRRGDSVIDLPLSITV 210
            FTA    I +G ++ L WS+ +A +VT+   VG V    +R VSP+ TT+YTLT       +   + +TV
Sbjct:  200 FTANPTTIEVGSSSTLSWSVSNATSVTINQGVGSVPGSSNRVVSPSVTTDYTLTASNSQGNVQATVRVTV 269          
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: A0A7C2WH92_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7C2WH92_9CHLR)

HSP 1 Score: 50.1 bits (118), Expect = 2.310e-5
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 FTATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLT 162
            F A+   I  GE+  L W +  A AV++ P +G+VA  G+R VSPT TT YTLT
Sbjct:  126 FDASPGVIAEGESLTLSWDVSGAVAVSIAPGIGNVALAGTRVVSPTKTTSYTLT 179          
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: A0A7W0CCN0_9DELT (SdrD_B domain-containing protein n=1 Tax=Desulfosalsimonas propionicica TaxID=332175 RepID=A0A7W0CCN0_9DELT)

HSP 1 Score: 50.1 bits (118), Expect = 2.350e-5
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    7 ATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIR-RGDSVID 189
            A  Q I  GE + L WS  +AD   +EP +G+V  +GS +VSP ++T Y++T    GDS  D
Sbjct:  109 ADPQTIKPGETSTLSWSASNADTCAIEPDIGEVDTIGSLDVSPDESTVYSITATGAGDSAPD 170          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A8J7QI31_9BACT1.320e-844.29Uncharacterized protein n=1 Tax=Acanthopleuribacte... [more]
X1PKJ5_9ZZZZ4.670e-742.37Uncharacterized protein n=1 Tax=marine sediment me... [more]
UPI001A9AF9A01.040e-637.14hypothetical protein n=1 Tax=Desulfonema magnum Ta... [more]
A0A350AJW9_9CHLR1.380e-638.57PKD domain-containing protein n=1 Tax=Dehalococcoi... [more]
A0A2N6BU30_9DELT2.720e-640.00Sugar-binding protein (Fragment) n=1 Tax=Desulfoba... [more]
A0A2E5FMP5_9BACT5.020e-647.83PG_binding_1 domain-containing protein n=1 Tax=Bry... [more]
UPI0019CD745B5.030e-644.44OmpA family protein n=1 Tax=Bryobacteraceae bacter... [more]
A0A8A4TDA5_9BACT5.040e-637.14BACON domain-containing protein n=1 Tax=Sulfidibac... [more]
A0A7C2WH92_9CHLR2.310e-548.15Uncharacterized protein n=1 Tax=Dehalococcoidia ba... [more]
A0A7W0CCN0_9DELT2.350e-541.94SdrD_B domain-containing protein n=1 Tax=Desulfosa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig105433contigP-canaliculata_contig105433:124..333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.2203126-CDS-P-canaliculata_contig105433:123..3331622815626.2203126-CDS-P-canaliculata_contig105433:123..333Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105433 124..333 -
1693494173.5594661-CDS-P-canaliculata_contig105433:123..3331693494173.5594661-CDS-P-canaliculata_contig105433:123..333Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105433 124..333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig105433.750.1prot_P-canaliculata_contig105433.750.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig105433 124..333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig105433.750.1

>prot_P-canaliculata_contig105433.750.1 ID=prot_P-canaliculata_contig105433.750.1|Name=mRNA_P-canaliculata_contig105433.750.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=70bp
FTATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTE
YTLTIRRGDSVIDLPLSITV
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mRNA from alignment at P-canaliculata_contig105433:124..333-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig105433.750.1 ID=mRNA_P-canaliculata_contig105433.750.1|Name=mRNA_P-canaliculata_contig105433.750.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at P-canaliculata_contig105433:124..333- (Pelvetia canaliculata dioecious)
TTTACAGCCACTCGCCAACGCATCACTATCGGTGAGGCCACAGTATTACA GTGGTCAATCCCAGACGCTGACGCGGTGACCCTCGAGCCATCGGTGGGTG ATGTAGCAAATGTCGGCTCACGGGAAGTCAGCCCAACCGACACTACCGAA TATACACTCACCATCCGCCGAGGTGACTCTGTTATCGACTTGCCGCTCAG CATCACCGTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig105433:124..333-

>mRNA_P-canaliculata_contig105433.750.1 ID=mRNA_P-canaliculata_contig105433.750.1|Name=mRNA_P-canaliculata_contig105433.750.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at P-canaliculata_contig105433:124..333- (Pelvetia canaliculata dioecious)
TTTACAGCCACTCGCCAACGCATCACTATCGGTGAGGCCACAGTATTACA
GTGGTCAATCCCAGACGCTGACGCGGTGACCCTCGAGCCATCGGTGGGTG
ATGTAGCAAATGTCGGCTCACGGGAAGTCAGCCCAACCGACACTACCGAA
TATACACTCACCATCCGCCGAGGTGACTCTGTTATCGACTTGCCGCTCAG
CATCACCGTGTTTACAGCCACTCGCCAACGCATCACTATCGGTGAGGCCA
CAGTATTACAGTGGTCAATCCCAGACGCTGACGCGGTGACCCTCGAGCCA
TCGGTGGGTGATGTAGCAAATGTCGGCTCACGGGAAGTCAGCCCAACCGA
CACTACCGAATATACACTCACCATCCGCCGAGGTGACTCTGTTATCGACT
TGCCGCTCAGCATCACCGTG
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