mRNA_P-canaliculata_contig105433.750.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: A0A8J7QI31_9BACT (Uncharacterized protein n=1 Tax=Acanthopleuribacter pedis TaxID=442870 RepID=A0A8J7QI31_9BACT) HSP 1 Score: 59.3 bits (142), Expect = 1.320e-8 Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 1
Query: 1 FTATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIRRGDSVIDLPLSITV 210
FTAT Q I G+++ L WS+ DAD+V++ P+VG VA GS +VSP+ +T YTLT I +++ V
Sbjct: 198 FTATPQTIDQGDSSRLAWSVTDADSVSISPTVGTVATSGSFDVSPSQSTVYTLTATNDAGSIQRSVTVNV 267
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: X1PKJ5_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1PKJ5_9ZZZZ) HSP 1 Score: 52.8 bits (125), Expect = 4.670e-7 Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 1 FTATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIRRGD 177
FTA + I GE++ L W++ +A VT+ +G V+ G+ EVSP +TT YTLT + D
Sbjct: 53 FTANPESINRGESSTLSWNVTNATTVTINQGIGIVSAKGTTEVSPEETTTYTLTAKNND 111
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: UPI001A9AF9A0 (hypothetical protein n=1 Tax=Desulfonema magnum TaxID=45655 RepID=UPI001A9AF9A0) HSP 1 Score: 53.9 bits (128), Expect = 1.040e-6 Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 1
Query: 1 FTATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIRRGDSVIDLPLSITV 210
F+A+ ++ GE VL W AD+ TL P +GD++ G+ EVSP +TT YTLT + +++ V
Sbjct: 407 FSASATSVSPGETVVLSWDTSGADSRTLGPGIGDISESGTAEVSPEETTTYTLTASGPGGTVTAAVTVAV 476
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: A0A350AJW9_9CHLR (PKD domain-containing protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A350AJW9_9CHLR) HSP 1 Score: 53.5 bits (127), Expect = 1.380e-6 Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 1
Query: 1 FTATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIRRGDSVIDLPLSITV 210
F + I IG++ L W++ A +V++ P +G+VA+ G+R VSPT TT YTLT I L + V
Sbjct: 127 FDTDTKSIIIGKSATLNWNVTGATSVSISPDIGNVASTGTRIVSPTSTTIYTLTATNTVGTISAELQVLV 196
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: A0A2N6BU30_9DELT (Sugar-binding protein (Fragment) n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A2N6BU30_9DELT) HSP 1 Score: 52.8 bits (125), Expect = 2.720e-6 Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 1
Query: 4 TATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIRR--GDSVIDLPLSIT 207
TA + I +GE++ L WS AD +EP +G V GS +VSPT+TT YT+T G + D+ +++T
Sbjct: 216 TADPEAILLGESSTLTWSSTHADTCMIEPGIGSVDVSGSTQVSPTETTTYTITATGPGGTAASDVTITVT 285
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: A0A2E5FMP5_9BACT (PG_binding_1 domain-containing protein n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A2E5FMP5_9BACT) HSP 1 Score: 51.6 bits (122), Expect = 5.020e-6 Identity = 22/46 (47.83%), Postives = 35/46 (76.09%), Query Frame = 1
Query: 31 GEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIR 168
G++T L+WS +A++ +L+ VGDV+ GSREVSPT +T Y +T++
Sbjct: 55 GKSTTLKWSSENAESASLDQGVGDVSTSGSREVSPTQSTTYQITVK 100
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: UPI0019CD745B (OmpA family protein n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=UPI0019CD745B) HSP 1 Score: 52.0 bits (123), Expect = 5.030e-6 Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 22 ITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIRRGDSVIDLPLSITV 210
IT GEA L +S +AD+VT+ P++G V GSR V+PT TT YTLT +++TV
Sbjct: 696 ITAGEAATLTYSTANADSVTISPNIGAVDLSGSRVVTPTQTTTYTLTATNATGPATCNVTVTV 758
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: A0A8A4TDA5_9BACT (BACON domain-containing protein n=1 Tax=Sulfidibacter corallicola TaxID=2818388 RepID=A0A8A4TDA5_9BACT) HSP 1 Score: 52.0 bits (123), Expect = 5.040e-6 Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 1
Query: 1 FTATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIRRGDSVIDLPLSITV 210
FTA I +G ++ L WS+ +A +VT+ VG V +R VSP+ TT+YTLT + + +TV
Sbjct: 200 FTANPTTIEVGSSSTLSWSVSNATSVTINQGVGSVPGSSNRVVSPSVTTDYTLTASNSQGNVQATVRVTV 269
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: A0A7C2WH92_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7C2WH92_9CHLR) HSP 1 Score: 50.1 bits (118), Expect = 2.310e-5 Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1
Query: 1 FTATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLT 162
F A+ I GE+ L W + A AV++ P +G+VA G+R VSPT TT YTLT
Sbjct: 126 FDASPGVIAEGESLTLSWDVSGAVAVSIAPGIGNVALAGTRVVSPTKTTSYTLT 179
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Match: A0A7W0CCN0_9DELT (SdrD_B domain-containing protein n=1 Tax=Desulfosalsimonas propionicica TaxID=332175 RepID=A0A7W0CCN0_9DELT) HSP 1 Score: 50.1 bits (118), Expect = 2.350e-5 Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1
Query: 7 ATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEYTLTIR-RGDSVID 189
A Q I GE + L WS +AD +EP +G+V +GS +VSP ++T Y++T GDS D
Sbjct: 109 ADPQTIKPGETSTLSWSASNADTCAIEPDIGEVDTIGSLDVSPDESTVYSITATGAGDSAPD 170 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig105433.750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig105433.750.1 >prot_P-canaliculata_contig105433.750.1 ID=prot_P-canaliculata_contig105433.750.1|Name=mRNA_P-canaliculata_contig105433.750.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=70bp FTATRQRITIGEATVLQWSIPDADAVTLEPSVGDVANVGSREVSPTDTTEback to top mRNA from alignment at P-canaliculata_contig105433:124..333- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig105433.750.1 ID=mRNA_P-canaliculata_contig105433.750.1|Name=mRNA_P-canaliculata_contig105433.750.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at P-canaliculata_contig105433:124..333- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig105433:124..333- >mRNA_P-canaliculata_contig105433.750.1 ID=mRNA_P-canaliculata_contig105433.750.1|Name=mRNA_P-canaliculata_contig105433.750.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at P-canaliculata_contig105433:124..333- (Pelvetia canaliculata dioecious)back to top |