mRNA_P-canaliculata_contig100116.63.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100116.63.1
Unique NamemRNA_P-canaliculata_contig100116.63.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100116.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100116contigP-canaliculata_contig100116:2..679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size678
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100116.63.1prot_P-canaliculata_contig100116.63.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100116 121..486 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.0884-UTR-P-canaliculata_contig100116:1..1201622815574.0884-UTR-P-canaliculata_contig100116:1..120Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100116 2..120 +
1693494144.974232-UTR-P-canaliculata_contig100116:1..1201693494144.974232-UTR-P-canaliculata_contig100116:1..120Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100116 2..120 +
1622815574.1124544-UTR-P-canaliculata_contig100116:486..6791622815574.1124544-UTR-P-canaliculata_contig100116:486..679Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100116 487..679 +
1693494145.005596-UTR-P-canaliculata_contig100116:486..6791693494145.005596-UTR-P-canaliculata_contig100116:486..679Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100116 487..679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.099811-CDS-P-canaliculata_contig100116:120..4861622815574.099811-CDS-P-canaliculata_contig100116:120..486Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100116 121..486 +
1693494144.9923077-CDS-P-canaliculata_contig100116:120..4861693494144.9923077-CDS-P-canaliculata_contig100116:120..486Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100116 121..486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100116.63.1

>prot_P-canaliculata_contig100116.63.1 ID=prot_P-canaliculata_contig100116.63.1|Name=mRNA_P-canaliculata_contig100116.63.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=122bp
MLYCDDDDGRMEYIGLVGCECECVPGSWGVARCSRECGCLIASRDGRCDN
EDAISDSITCSYMFGIHISDRGAFGGAAVVSAFARVGAVAFVTTVTICCD
NNIRHLVVFFLLRNDGCRLSI*
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mRNA from alignment at P-canaliculata_contig100116:2..679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100116.63.1 ID=mRNA_P-canaliculata_contig100116.63.1|Name=mRNA_P-canaliculata_contig100116.63.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=678bp|location=Sequence derived from alignment at P-canaliculata_contig100116:2..679+ (Pelvetia canaliculata dioecious)
CACTCCATCAACCCCAACATGAACAGCACATCCGTACCCGAACCTTACAG
CTTCAGAGGCTATTAAACACGCGAGTAGTTGTCGTTCAAGAGAGCGCAGT
TAATTCGTCGCGCTACGCGATGTTGTACTGCGACGACGATGATGGTCGCA
TGGAGTATATCGGTCTCGTGGGCTGCGAGTGTGAGTGTGTTCCTGGGAGT
TGGGGTGTCGCTCGTTGTTCGAGAGAATGCGGTTGCTTGATTGCGTCCCG
CGACGGGCGCTGCGACAACGAGGACGCGATATCCGATAGCATTACGTGCT
CATACATGTTTGGTATACATATTAGTGACAGGGGGGCGTTTGGGGGTGCT
GCTGTAGTGTCGGCTTTTGCTCGAGTAGGCGCAGTTGCGTTCGTTACTAC
CGTGACGATATGCTGCGATAATAACATAAGACACCTGGTAGTATTTTTCC
TCCTACGAAATGATGGGTGTAGGTTGAGCATTTAGATATCCCCTTGTCGA
GTGTGTTTTTTTGGCGCACCGCTTGCTGCAAGCAAGAGCACGACAAAAAG
GGTGGACTAATGTGAGGATATTCGGGTCACTGGAGAGCCGAGGGATGTTC
CATGCGGAATCCCACTTAGAGTGGTAGCGTTCGAGACTACTCTGGCGTCT
GGGCTTACAAAAAGTTAATAGTTCCTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig100116:2..679+

>mRNA_P-canaliculata_contig100116.63.1 ID=mRNA_P-canaliculata_contig100116.63.1|Name=mRNA_P-canaliculata_contig100116.63.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at P-canaliculata_contig100116:2..679+ (Pelvetia canaliculata dioecious)
ATGTTGTACTGCGACGACGATGATGGTCGCATGGAGTATATCGGTCTCGT
GGGCTGCGAGTGTGAGTGTGTTCCTGGGAGTTGGGGTGTCGCTCGTTGTT
CGAGAGAATGCGGTTGCTTGATTGCGTCCCGCGACGGGCGCTGCGACAAC
GAGGACGCGATATCCGATAGCATTACGTGCTCATACATGTTTGGTATACA
TATTAGTGACAGGGGGGCGTTTGGGGGTGCTGCTGTAGTGTCGGCTTTTG
CTCGAGTAGGCGCAGTTGCGTTCGTTACTACCGTGACGATATGCTGCGAT
AATAACATAAGACACCTGGTAGTATTTTTCCTCCTACGAAATGATGGGTG
TAGGTTGAGCATTTAGATGTTGTACTGCGACGACGATGATGGTCGCATGG
AGTATATCGGTCTCGTGGGCTGCGAGTGTGAGTGTGTTCCTGGGAGTTGG
GGTGTCGCTCGTTGTTCGAGAGAATGCGGTTGCTTGATTGCGTCCCGCGA
CGGGCGCTGCGACAACGAGGACGCGATATCCGATAGCATTACGTGCTCAT
ACATGTTTGGTATACATATTAGTGACAGGGGGGCGTTTGGGGGTGCTGCT
GTAGTGTCGGCTTTTGCTCGAGTAGGCGCAGTTGCGTTCGTTACTACCGT
GACGATATGCTGCGATAATAACATAAGACACCTGGTAGTATTTTTCCTCC
TACGAAATGATGGGTGTAGGTTGAGCATTTAG
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