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Homology
BLAST of mRNA_P-canaliculata_contig9800.23895.1 vs. uniprot
Match: A0A6H5JM01_9PHAE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM01_9PHAE) HSP 1 Score: 330 bits (845), Expect = 3.230e-108 Identity = 193/303 (63.70%), Postives = 226/303 (74.59%), Query Frame = 0 Query: 1 MAFLLETQLPKPGLESSRRNLVLSVLEEYHGPIVATVAEVLMRTERTTLAELTRLVQRDQGIMGVSRAGKTRTTVTVSHVKNSLLIMMQHNMVTATMPTERELRKAKANAS-RAANVRLYYTLQPLEALVRTRGPLFHYQATDKFGKVAGMVVDCFLRNGRRTLPEVKMEVLHRAEGLARIRQAQAASWGEEVEDA------EGMETVTAGAIQKSFQDLVMAKYIDKVPKLDLVTAAASPEKAKKPSMTFGTA----SSGKVGAGRXXXXXXXXXXXXSRELEERQRKGAAQTAARKRRMIG 292
MAFLLE+Q+P LESSRR LVLSV+EEYHGPIV+TVAEVLMR ERTTLAELTRLV RDQGIMGVSRAGKTRT VT ++VK SLLIM QHNMV A MPTE+E+RKA+A++S R++N+RL+YTL PLE LVRTRGP FH A F KVAG+VVDCFLR+GRRTLP+VK E+L R AR R+A A ED + ++ VT+ +IQKSF++LVM KYIDKVPKLDLVT PEKAKKPSMTFG S GK + ++EL ERQ+KGAAQ +ARKRRM+G
Sbjct: 1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRAERTTLAELTRLVLRDQGIMGVSRAGKTRTKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSSNIRLHYTLLPLEVLVRTRGPQFHSHAAKTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALA-----NPEDXXXXXXXDNVQEVTSESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPADNDSKGKSASA------ANGQNGRNKELAERQQKGAAQRSARKRRMLG 292
BLAST of mRNA_P-canaliculata_contig9800.23895.1 vs. uniprot
Match: D7FMS5_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS5_ECTSI) HSP 1 Score: 322 bits (825), Expect = 4.200e-107 Identity = 199/304 (65.46%), Postives = 231/304 (75.99%), Query Frame = 0 Query: 1 MAFLLETQLPKPGLESSRRNLVLSVLEEYHGPIVATVAEVLMRTERTTLAELTRLVQRDQGIMGVSRAGKTRTTVTVSHVKNSLLIMMQHNMVTATMPTERELRKAKANAS-RAANVRLYYTLQPLEALVRTRGPLFHYQATDKFGKVAGMVVDCFLRNGRRTLPEVKMEVLHRAEGLARIRQAQAASWGEEVEDA------EGMETVTAGAIQKSFQDLVMAKYIDKVPKLDLVTAAASPEKAKKPSMTFGTASSGKVGAGRXXXXXXXXXXXX-----SRELEERQRKGAAQTAARKRRMIG 292
MAFLLE+Q+P LESSRR LVLSV+EEYHGPIV+TVAEVLMR +RTTLAELTRLV RDQGIMGVSRAGKT T VT ++VK SLLIM QHNMV A MPTE+E+RKA+A++S R+ N+RL+YTL PLE LVRTRGP FH A F KVAG+VVDCFLR+GRRTLP+VK E+L R AR R+A A ED + ++ VT +IQKSF++LVM KYIDKVPKLDLVT PEKAKKPSMTFG + XXXXXXXXXX ++EL ERQ+KGAAQT+ARKRRM+G
Sbjct: 1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMGVSRAGKTITKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSGNIRLHYTLLPLEVLVRTRGPQFHSHAARTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALA-----NPEDXXXXXXXDHVQEVTPESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPAGSXXXXXXXXXXXXXXXXANGQNGRNKELAERQQKGAAQTSARKRRMLG 299
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9800.23895.1 vs. uniprot
Analysis Date: 2022-09-16 ( Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match Name | E-value | Identity | Description | |
A0A6H5JM01_9PHAE | 3.230e-108 | 63.70 | DNA-directed RNA polymerase III subunit RPC3 n=1 T... | [more] |
D7FMS5_ECTSI | 4.200e-107 | 65.46 | DNA-directed RNA polymerase III subunit RPC3 n=1 T... | [more] |
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR013197 | RNA polymerase III subunit RPC82-related, helix-turn-helix | PFAM | PF08221 | HTH_9 | coord: 21..56 e-value: 3.6E-5 score: 23.8 |
IPR039748 | DNA-directed RNA polymerase III subunit RPC3 | PANTHER | PTHR12949 | RNA POLYMERASE III DNA DIRECTED -RELATED | coord: 20..287 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_P-canaliculata_contig9800.23895.1 ID=prot_P-canaliculata_contig9800.23895.1|Name=mRNA_P-canaliculata_contig9800.23895.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=292bp MAFLLETQLPKPGLESSRRNLVLSVLEEYHGPIVATVAEVLMRTERTTLA ELTRLVQRDQGIMGVSRAGKTRTTVTVSHVKNSLLIMMQHNMVTATMPTE RELRKAKANASRAANVRLYYTLQPLEALVRTRGPLFHYQATDKFGKVAGM VVDCFLRNGRRTLPEVKMEVLHRAEGLARIRQAQAASWGEEVEDAEGMET VTAGAIQKSFQDLVMAKYIDKVPKLDLVTAAASPEKAKKPSMTFGTASSG KVGAGRDGGRNANGKNSKSRELEERQRKGAAQTAARKRRMIG back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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