prot_P-canaliculata_contig9704.23786.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9704.23786.1
Unique Nameprot_P-canaliculata_contig9704.23786.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length169
Homology
BLAST of mRNA_P-canaliculata_contig9704.23786.1 vs. uniprot
Match: A0A2K2D9X4_BRADI (Uncharacterized protein (Fragment) n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A2K2D9X4_BRADI)

HSP 1 Score: 88.6 bits (218), Expect = 3.430e-19
Identity = 59/105 (56.19%), Postives = 65/105 (61.90%), Query Frame = 0
Query:   15 HDWTRQRRQRPRQGRGQTPPQDPPXXXXXXXEARDPPPGAPRRRQAHIRHDLRRDARRAQDLPRGRHPRRRHLHRTRQAQDGHVARCRLRPQATGPHALWLRRLI 119
            H  TRQ R+  RQGR Q PP+  P       +A DP PG  RRR+A++R  LR D RR QDLPR RHPRRRHLHR       H    RLRPQA GPH L LRRLI
Sbjct:   21 HVRTRQGREGARQGRRQAPPEGSPRQHSGHHQAGDPAPGEERRREANLRAHLRGDPRRPQDLPRERHPRRRHLHRAXXXXXXHCHGRRLRPQAPGPHPLRLRRLI 125          
BLAST of mRNA_P-canaliculata_contig9704.23786.1 vs. uniprot
Match: A0A2K2CSV7_BRADI (Uncharacterized protein (Fragment) n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A2K2CSV7_BRADI)

HSP 1 Score: 86.3 bits (212), Expect = 6.600e-18
Identity = 58/102 (56.86%), Postives = 63/102 (61.76%), Query Frame = 0
Query:   17 WTRQRRQRPRQGRGQTPPQDPPXXXXXXXEARDPPPGAPRRRQAHIRHDLRRDARRAQDLPRGRHPRRRHLHRTRQAQDGHVARCRLRPQATGPHALWLRRL 118
            W RQ R+  RQGR Q  P+          +A DP  GA  RR+AH+R DLR D RRAQDLPR RHPRRRHLHR R  QD H    RLR QA G H L LRRL
Sbjct:   92 WKRQGREGARQGRSQAAPEGAARQHPGHHQAGDPASGAQGRREAHLRADLRGDPRRAQDLPRERHPRRRHLHRARPPQDRHRDGRRLRAQAPGTHPLRLRRL 193          
BLAST of mRNA_P-canaliculata_contig9704.23786.1 vs. uniprot
Match: Q4RFZ6_TETNG ((spotted green pufferfish) hypothetical protein n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4RFZ6_TETNG)

HSP 1 Score: 69.3 bits (168), Expect = 7.140e-12
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 0
Query:   34 PQDPPXXXXXXXEARDPPPGAPRRRQAHIRHDLRRDARRAQDLPRGRHPRRRHLHRTRQAQDGHVARCRLRPQATGPHALWLRRL 118
            PQ PP       + R PPPG+ RRR+AH+R DLR D R A+ +P  R PRRRHLH  RQ +DG      +RP+  GPH + LRRL
Sbjct:   20 PQGPPRQHPGHHQTRHPPPGSARRREAHLRPDLRGDPRGAEGVPGERDPRRRHLHGARQEEDGDGHGRGVRPEEAGPHPVRLRRL 104          
BLAST of mRNA_P-canaliculata_contig9704.23786.1 vs. uniprot
Match: Q4RJ90_TETNG (Chromosome 18 SCAF15038, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4RJ90_TETNG)

HSP 1 Score: 71.2 bits (173), Expect = 2.280e-11
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 0
Query:   46 EARDPPPGAPRRRQAHIRHDLRRDARRAQDLPRGRHPRRRHLHRTRQAQDGHVARCRLRPQATGPHALWLRRL 118
            +AR PPPG+PRRRQAH+  DLR D RRAQ +P  R P  RHLHR RQ +D H   C +R QA G H + LRRL
Sbjct:  373 QARHPPPGSPRRRQAHLGPDLRGDPRRAQGVPGERDPGCRHLHRARQEEDRHRHGCGVRAQAAGTHPVRLRRL 445          
BLAST of mRNA_P-canaliculata_contig9704.23786.1 vs. uniprot
Match: A0A835BL67_9POAL (Uncharacterized protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835BL67_9POAL)

HSP 1 Score: 68.9 bits (167), Expect = 3.660e-11
Identity = 53/104 (50.96%), Postives = 56/104 (53.85%), Query Frame = 0
Query:   19 RQRRQRPRQGRGQTPPQDPPXXXXXXXEARDPPPGAPRRRQAHIRHDLRRDARRAQDLPRGRHPRRRHLHRTRQAQDGHVARCRLRPQATGPHALWLRRLILGV 122
            RQ RQ   QGR Q PPQ          +A DP  GA  RR+A           RAQDLPR RHPRR HLHR R  QD H    RLR QA GPH L +RRLI  V
Sbjct:   96 RQGRQGAGQGRRQAPPQGAARQHPGHHQAGDPAAGAEGRREAXXXXXXXXXXXRAQDLPRERHPRRCHLHRARPPQDRHRHGRRLRAQAPGPHPLRIRRLIFSV 199          
BLAST of mRNA_P-canaliculata_contig9704.23786.1 vs. uniprot
Match: A0A0Q3GP46_BRADI (Uncharacterized protein (Fragment) n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3GP46_BRADI)

HSP 1 Score: 53.5 bits (127), Expect = 5.350e-6
Identity = 33/51 (64.71%), Postives = 33/51 (64.71%), Query Frame = 0
Query:   69 DARRAQDLPRGRHPRRRHLHRTRQAQDGHVARCRLRPQATGPHALWLRRLI 119
            D RRAQDLPR RHPRRRHLHR R          RLR QA G H L LRRLI
Sbjct:   78 DPRRAQDLPRERHPRRRHLHRARAXXXXXXHGRRLRAQAPGTHPLRLRRLI 128          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9704.23786.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2K2D9X4_BRADI3.430e-1956.19Uncharacterized protein (Fragment) n=1 Tax=Brachyp... [more]
A0A2K2CSV7_BRADI6.600e-1856.86Uncharacterized protein (Fragment) n=1 Tax=Brachyp... [more]
Q4RFZ6_TETNG7.140e-1250.59(spotted green pufferfish) hypothetical protein n=... [more]
Q4RJ90_TETNG2.280e-1158.90Chromosome 18 SCAF15038, whole genome shotgun sequ... [more]
A0A835BL67_9POAL3.660e-1150.96Uncharacterized protein n=1 Tax=Digitaria exilis T... [more]
A0A0Q3GP46_BRADI5.350e-664.71Uncharacterized protein (Fragment) n=1 Tax=Brachyp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9704contigP-canaliculata_contig9704:8215..8776 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9704.23786.1mRNA_P-canaliculata_contig9704.23786.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9704 8215..8778 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9704.23786.1 ID=prot_P-canaliculata_contig9704.23786.1|Name=mRNA_P-canaliculata_contig9704.23786.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=169bp
SPTTTQHSPLPHQYHDWTRQRRQRPRQGRGQTPPQDPPRQHPRHHEARDP
PPGAPRRRQAHIRHDLRRDARRAQDLPRGRHPRRRHLHRTRQAQDGHVAR
CRLRPQATGPHALWLRRLILGVMFYDGSVGTHAGAGPDGAREGRGAPWSW
VVCSPSGVDRGARLNGTLS
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