prot_P-canaliculata_contig97028.23780.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig97028.23780.1
Unique Nameprot_P-canaliculata_contig97028.23780.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length107
Homology
BLAST of mRNA_P-canaliculata_contig97028.23780.1 vs. uniprot
Match: Q2TUD7_9PHAE (Ribosomal protein S10 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUD7_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 9.910e-57
Identity = 94/105 (89.52%), Postives = 99/105 (94.29%), Query Frame = 0
Query:    1 MSSSQEFTYKCEVWSLSTNLENLTLWVLLLPLSLSSTGLSTRIKRFTLLRSPLGNKRSKDQFERQEYRSYFSLESKKASKILAFIDVISHLNGVRYKIKVANKIK 105
            MSSSQ FTYKCEVWSLSTNL NL LWVLLLPLSLSSTGLSTRIKRFTLLRSPLGNK SKDQFERQEYRSY S+ESKKASKILAF+DV+S LNGV+YK+KVANKIK
Sbjct:    1 MSSSQYFTYKCEVWSLSTNLVNLKLWVLLLPLSLSSTGLSTRIKRFTLLRSPLGNKTSKDQFERQEYRSYLSIESKKASKILAFLDVLSQLNGVKYKVKVANKIK 105          
BLAST of mRNA_P-canaliculata_contig97028.23780.1 vs. uniprot
Match: A0A8F0FCZ9_9PHAE (Ribosomal protein S10 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0FCZ9_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 9.370e-37
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 0
Query:    3 SSQEFTYKCEVWSLSTNLENLTLWVLLLPLSLSSTGLSTRIKRFTLLRSPLGNKRSKDQFERQEYRSYFSLESKKASKILAFIDVISHLNGVRYKIKVANKI 104
            S+++  Y C VWS S NL +L LW LLLPLS  STGL TRIKRFTLLRSPLGNK +KDQFER+EYR YFS++S+ A KILAFID + H NGVR+K+ ++  +
Sbjct:    6 SNKKVLYHCRVWSASINLNSLKLWYLLLPLSEPSTGLPTRIKRFTLLRSPLGNKTAKDQFERREYRGYFSIQSEHACKILAFIDTLGHFNGVRFKMIISRSM 107          
BLAST of mRNA_P-canaliculata_contig97028.23780.1 vs. uniprot
Match: A0A6N3IW20_9PHAE (Ribosomal protein S10 n=11 Tax=Lessoniaceae TaxID=35120 RepID=A0A6N3IW20_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.330e-36
Identity = 63/99 (63.64%), Postives = 85/99 (85.86%), Query Frame = 0
Query:    5 QEFTYKCEVWSLSTNLENLTLWVLLLPLSLSSTGLSTRIKRFTLLRSPLGNKRSKDQFERQEYRSYFSLESKKASKILAFIDVISHLNGVRYKIKVANK 103
            +  TY C+VWS+ST+L++L   +LLLPL +SSTGLSTRIKRFTLLRSPLGNK +KDQFER+EYRSYF+L+S+  +KILAF+D++ +LNGV++K+ +  K
Sbjct:    6 KNITYICKVWSVSTDLKSLNFLLLLLPLFISSTGLSTRIKRFTLLRSPLGNKTAKDQFERREYRSYFTLKSQNPAKILAFLDILKYLNGVKFKVILQEK 104          
BLAST of mRNA_P-canaliculata_contig97028.23780.1 vs. uniprot
Match: A0A8F0FCY5_9PHAE (Ribosomal protein S10 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FCY5_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 7.910e-36
Identity = 62/95 (65.26%), Postives = 82/95 (86.32%), Query Frame = 0
Query:    9 YKCEVWSLSTNLENLTLWVLLLPLSLSSTGLSTRIKRFTLLRSPLGNKRSKDQFERQEYRSYFSLESKKASKILAFIDVISHLNGVRYKIKVANK 103
            Y C+VWS+ST+ ++L    LLLPLS+SSTGLST+IKRFTLLRSPLGNK +KDQFER+EYRSYF+++S+  SKILAFID++ +LNGV++K+ +  K
Sbjct:   10 YICKVWSVSTDFKSLNSLALLLPLSISSTGLSTKIKRFTLLRSPLGNKSAKDQFERREYRSYFTIKSRSPSKILAFIDILKYLNGVKFKVVLQEK 104          
BLAST of mRNA_P-canaliculata_contig97028.23780.1 vs. uniprot
Match: A0A3G5FPL8_9PHAE (Ribosomal protein S10 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPL8_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.840e-35
Identity = 64/92 (69.57%), Postives = 79/92 (85.87%), Query Frame = 0
Query:    8 TYKCEVWSLSTNLENLTLWVLLLPLSLSSTGLSTRIKRFTLLRSPLGNKRSKDQFERQEYRSYFSLESKKASKILAFIDVISHLNGVRYKIK 99
            TY CEVWS ST+L++L LW+LLLPLS  ST LST+IKRFTLLRSPLGNKRSKDQFER+EYRSYFS +SK+ SK+LA ++V+ + N V+ KI+
Sbjct:    7 TYICEVWSSSTDLKSLKLWLLLLPLSRPSTALSTKIKRFTLLRSPLGNKRSKDQFERREYRSYFSFKSKRPSKVLAVLEVLKYSNDVKSKIQ 98          
BLAST of mRNA_P-canaliculata_contig97028.23780.1 vs. uniprot
Match: A0A8F0FCS1_9PHAE (Ribosomal protein S10 n=1 Tax=Dictyoneurum californicum TaxID=169784 RepID=A0A8F0FCS1_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.330e-35
Identity = 63/90 (70.00%), Postives = 79/90 (87.78%), Query Frame = 0
Query:    9 YKCEVWSLSTNLENLTLWVLLLPLSLSSTGLSTRIKRFTLLRSPLGNKRSKDQFERQEYRSYFSLESKKASKILAFIDVISHLNGVRYKI 98
            Y C+VWS+ST+ ++L  ++LLLP SLSSTGLSTRIKRFTLLRSPLGNK SKDQFER+EYRSYF ++SK  SKILAFI ++ +LNGV++K+
Sbjct:   10 YICKVWSVSTDFKSLNSFLLLLPFSLSSTGLSTRIKRFTLLRSPLGNKASKDQFERREYRSYFIIKSKSPSKILAFIGILRYLNGVKFKV 99          
BLAST of mRNA_P-canaliculata_contig97028.23780.1 vs. uniprot
Match: A0A8F0FD52_9PHAE (Ribosomal protein S10 n=9 Tax=Laminariales TaxID=2886 RepID=A0A8F0FD52_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.120e-35
Identity = 62/95 (65.26%), Postives = 82/95 (86.32%), Query Frame = 0
Query:    9 YKCEVWSLSTNLENLTLWVLLLPLSLSSTGLSTRIKRFTLLRSPLGNKRSKDQFERQEYRSYFSLESKKASKILAFIDVISHLNGVRYKIKVANK 103
            Y C+VWS+ST+ ++L    LLLPLS+SSTGLSTRIKRFTLLRSPLGNK +KDQFER+EYRSYF+++S+  +KILAFID++ +LNGV++K+ +  K
Sbjct:   10 YICKVWSVSTDFKSLNSLSLLLPLSISSTGLSTRIKRFTLLRSPLGNKAAKDQFERREYRSYFTIKSQNPAKILAFIDILRYLNGVKFKVVLKEK 104          
BLAST of mRNA_P-canaliculata_contig97028.23780.1 vs. uniprot
Match: UPI001D11F024 (ribosomal protein S10 n=1 Tax=Alaria marginata TaxID=98221 RepID=UPI001D11F024)

HSP 1 Score: 125 bits (314), Expect = 3.120e-35
Identity = 64/99 (64.65%), Postives = 85/99 (85.86%), Query Frame = 0
Query:    9 YKCEVWSLSTNLENLTLWVLLLPLSLSSTGLSTRIKRFTLLRSPLGNKRSKDQFERQEYRSYFSLESKKASKILAFIDVISHLNGVRYKIKVA-NKIKI 106
            Y C+VWS+ST+L++L    LLLPLS+SSTGLS RIKRFTLLRSPLGNK +KDQFER+EYRSYF+++S+  +KILAFID++ +LNGV++K+ +  N I+I
Sbjct:   10 YSCKVWSVSTDLKSLNSLSLLLPLSISSTGLSPRIKRFTLLRSPLGNKAAKDQFERREYRSYFTIKSQSPAKILAFIDILKYLNGVKFKVVLQENNIEI 108          
BLAST of mRNA_P-canaliculata_contig97028.23780.1 vs. uniprot
Match: A0A4D6E534_9PHAE (Ribosomal protein S10 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E534_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 5.970e-35
Identity = 61/95 (64.21%), Postives = 82/95 (86.32%), Query Frame = 0
Query:    9 YKCEVWSLSTNLENLTLWVLLLPLSLSSTGLSTRIKRFTLLRSPLGNKRSKDQFERQEYRSYFSLESKKASKILAFIDVISHLNGVRYKIKVANK 103
            Y C+VWS+ST+ ++L    LLLPLS+ STGLST+IKRFTLLRSPLGNK SKDQFER+EYRSYF+++S+ +SKILAF+D++ +LNGV++K+ +  K
Sbjct:   19 YICKVWSVSTDFKSLNYLSLLLPLSIYSTGLSTKIKRFTLLRSPLGNKASKDQFERREYRSYFTIKSQSSSKILAFLDILKYLNGVKFKVVLQEK 113          
BLAST of mRNA_P-canaliculata_contig97028.23780.1 vs. uniprot
Match: S4S3V8_LAMHY (Ribosomal protein S10 n=4 Tax=Laminaria TaxID=33637 RepID=S4S3V8_LAMHY)

HSP 1 Score: 124 bits (311), Expect = 8.660e-35
Identity = 64/95 (67.37%), Postives = 80/95 (84.21%), Query Frame = 0
Query:    9 YKCEVWSLSTNLENLTLWVLLLPLSLSSTGLSTRIKRFTLLRSPLGNKRSKDQFERQEYRSYFSLESKKASKILAFIDVISHLNGVRYKIKVANK 103
            Y C+VWS+ST+L++L    LLLPLS+SSTGLSTRIKRFTLLRSPLGNK +KDQFER EYRSYFS++ +  +KILAFID + +LNGV++KI +  K
Sbjct:   10 YICKVWSVSTDLKSLNSLSLLLPLSISSTGLSTRIKRFTLLRSPLGNKAAKDQFERLEYRSYFSIKYRNPAKILAFIDTLRYLNGVKFKIVLQEK 104          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97028.23780.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2TUD7_9PHAE9.910e-5789.52Ribosomal protein S10 n=2 Tax=Desmarestia TaxID=31... [more]
A0A8F0FCZ9_9PHAE9.370e-3763.73Ribosomal protein S10 n=1 Tax=Pseudochorda nagaii ... [more]
A0A6N3IW20_9PHAE1.330e-3663.64Ribosomal protein S10 n=11 Tax=Lessoniaceae TaxID=... [more]
A0A8F0FCY5_9PHAE7.910e-3665.26Ribosomal protein S10 n=2 Tax=Laminariales TaxID=2... [more]
A0A3G5FPL8_9PHAE1.840e-3569.57Ribosomal protein S10 n=1 Tax=Cladosiphon okamuran... [more]
A0A8F0FCS1_9PHAE2.330e-3570.00Ribosomal protein S10 n=1 Tax=Dictyoneurum califor... [more]
A0A8F0FD52_9PHAE3.120e-3565.26Ribosomal protein S10 n=9 Tax=Laminariales TaxID=2... [more]
UPI001D11F0243.120e-3564.65ribosomal protein S10 n=1 Tax=Alaria marginata Tax... [more]
A0A4D6E534_9PHAE5.970e-3564.21Ribosomal protein S10 n=2 Tax=Laminariaceae TaxID=... [more]
S4S3V8_LAMHY8.660e-3567.37Ribosomal protein S10 n=4 Tax=Laminaria TaxID=3363... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036838Ribosomal protein S10 domain superfamilyGENE3D3.30.70.600coord: 11..106
e-value: 2.1E-11
score: 45.4
IPR036838Ribosomal protein S10 domain superfamilySUPERFAMILY54999Ribosomal protein S10coord: 10..99
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 39..98
e-value: 2.9E-8
score: 33.8
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 23..41
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 42..106
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..22

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97028contigP-canaliculata_contig97028:250..570 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97028.23780.1mRNA_P-canaliculata_contig97028.23780.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig97028 250..570 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig97028.23780.1 ID=prot_P-canaliculata_contig97028.23780.1|Name=mRNA_P-canaliculata_contig97028.23780.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=107bp
MSSSQEFTYKCEVWSLSTNLENLTLWVLLLPLSLSSTGLSTRIKRFTLLR
SPLGNKRSKDQFERQEYRSYFSLESKKASKILAFIDVISHLNGVRYKIKV
ANKIKI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036838Ribosomal_S10_dom_sf
IPR027486Ribosomal_S10_dom