prot_P-canaliculata_contig96962.23748.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig96962.23748.1
Unique Nameprot_P-canaliculata_contig96962.23748.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length259
Homology
BLAST of mRNA_P-canaliculata_contig96962.23748.1 vs. uniprot
Match: A0A2V3IQ80_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ80_9FLOR)

HSP 1 Score: 140 bits (354), Expect = 3.950e-37
Identity = 76/147 (51.70%), Postives = 99/147 (67.35%), Query Frame = 0
Query:    3 LQRPWSRYVPPYRRGKAEICIMAKRNYKVYAEVGPHFGMLVRYLAVLDTGAGPNFVRKDILPQHLLEQIRFGPMPTIADANGKPVLALGTLPLVVRLGQLIVKIDFIVCERLAAPVILGCDFCDRWVEAIYPKSRSVQLDDGSYVPI 149
            L+RP  RYV P RR    + IMA RNYKVYA++G    +L R LAVLDTGAGPNF R   L       ++   +P I DAN +P+ +LGT+ LVV+ G  + ++ FIVC  LA+PV+LGCD+ DR+VE I PK+R V+LD+G  VPI
Sbjct:  116 LKRPCRRYVCPERRTDY-VLIMAHRNYKVYADIGLSKSLLSRRLAVLDTGAGPNFTRLSELDSDEPAGMQKACLPDIRDANKRPIKSLGTIKLVVQHGNHVFRLSFIVCTTLASPVVLGCDYFDRFVETIRPKNREVELDEGFTVPI 261          
BLAST of mRNA_P-canaliculata_contig96962.23748.1 vs. uniprot
Match: UPI001E1DEA69 (uncharacterized protein LOC123544193 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEA69)

HSP 1 Score: 113 bits (283), Expect = 4.210e-25
Identity = 85/262 (32.44%), Postives = 126/262 (48.09%), Query Frame = 0
Query:   11 VPPYRRGKA----------EICIMAKRNYKVYAEVGPHFGMLVRYLAVLDTGAGPNFVRKDILPQHLLEQIRFG-PMPTIADANGKPVLALGTLPLVVRLGQLIVKIDFIVCERLAAPVILGCDFCDRWVEAIYPKSRSVQLDDGSYVPI---VRRPLARSPRSAPLPAELEFDSLKRRISPKIRIARRVEIPPMSQKLVQVTTKREGVILIQPRQGLYDQKGVIATNGVAQVLEDEPFQIIMANFSREPVWLPKGQIVGLA 258
            VPP   GK            + +    NYK+   +G    +L    AVLDTGAG N VR D+LP++    +  G  +P I +A+G+ + A G + L V++G L+ ++ F V   L  P ILGC F +  V  I+PK R V L++G  + I   V    A +P    +P+             K+RIA+R  IP   +  V VTT   G+ L+         + V   +GVA V  + PF++ + N S   + L KG +VG A
Sbjct:   34 VPPVEHGKLLANSSEEVVESVFLFKSHNYKLCVSIGATAAVLYPLQAVLDTGAGINLVRDDVLPENWERMLLPGVALPRITNASGRRMPARGVIILYVQVGNLVKRVRFYVTPGLGVPCILGCTFINLHVRNIHPKERRVDLNEGGSIAITSGVSACHAVTPTREIIPSN------------KVRIAQRTVIPARCEAHVAVTTAITGLCLLTHSSR---SQVVSLASGVADVRSNVPFRVRLLNPSDRSITLSKGMVVGSA 280          
BLAST of mRNA_P-canaliculata_contig96962.23748.1 vs. uniprot
Match: A0A2V3IJC9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJC9_9FLOR)

HSP 1 Score: 76.3 bits (186), Expect = 7.540e-14
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 0
Query:    3 LQRPWSRYVPPYRRGKAEICIMAKRNYKVYAEVGPHFGMLVRYLAVLDTGAGPNFVRKDILPQHLLEQIRFGPMPTIADANGKPVLAL 90
            L+RPW  YV   R+    + IMA+RNYKVYA++G    +L R LAVLDTGAGPNF+R   L      +I+   +P I DAN +P+ +L
Sbjct:   45 LKRPWRGYVDMPRKTDY-VMIMARRNYKVYADIGSSKSLLSRRLAVLDTGAGPNFIRLYELQSDERSRIQEACLPDIRDANKRPIKSL 131          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig96962.23748.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IQ80_9FLOR3.950e-3751.70Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
UPI001E1DEA694.210e-2532.44uncharacterized protein LOC123544193 n=1 Tax=Merce... [more]
A0A2V3IJC9_9FLOR7.540e-1447.73Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10coord: 41..152
e-value: 9.7E-8
score: 33.8
IPR021109Aspartic peptidase domain superfamilySUPERFAMILY50630Acid proteasescoord: 46..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig96962contigP-canaliculata_contig96962:144..920 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig96962.23748.1mRNA_P-canaliculata_contig96962.23748.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig96962 144..920 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig96962.23748.1 ID=prot_P-canaliculata_contig96962.23748.1|Name=mRNA_P-canaliculata_contig96962.23748.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=259bp
MKLQRPWSRYVPPYRRGKAEICIMAKRNYKVYAEVGPHFGMLVRYLAVLD
TGAGPNFVRKDILPQHLLEQIRFGPMPTIADANGKPVLALGTLPLVVRLG
QLIVKIDFIVCERLAAPVILGCDFCDRWVEAIYPKSRSVQLDDGSYVPIV
RRPLARSPRSAPLPAELEFDSLKRRISPKIRIARRVEIPPMSQKLVQVTT
KREGVILIQPRQGLYDQKGVIATNGVAQVLEDEPFQIIMANFSREPVWLP
KGQIVGLAL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom_sf