prot_P-canaliculata_contig9692.23741.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig9692.23741.1
Unique Name	prot_P-canaliculata_contig9692.23741.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	316

Homology

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BLAST of mRNA_P-canaliculata_contig9692.23741.1 vs. uniprot
Match: D8LNS9_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNS9_ECTSI)

HSP 1 Score: 231 bits (590), Expect = 2.010e-72
Identity = 121/158 (76.58%), Postives = 132/158 (83.54%), Query Frame = 0

Query:    1 MTAGLYEGATFYFLVTIPPSYPFHAPSAVCTSRAWHPNIDLHSGFVSLPILTTDWRPVLSINTVVFALQLMFLEPSELMPVNESAAAALA-NPELFREQVRRTLAGGFLFGVQFEPHRQGSGCGNSDGPGAAQKRKRG--EGMDTEEVQTTLEAMRIQ 155
            MTAGL+EGATFYF++TIPPSYPFHAP+ VCTSRAWHPNIDLH+G VSLPILT DWRPVLSINTVVFALQLMF+EP+E   VN+ AAAAL+ NP+LFREQVRR+LAGG LFGVQFE HR G       G   A KRKRG  E MDTE VQTTLEAMRIQ
Sbjct:   51 MTAGLFEGATFYFILTIPPSYPFHAPTVVCTSRAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEHYAVNKPAAAALSSNPDLFREQVRRSLAGGSLFGVQFESHRLGGTADGKGGGHGAAKRKRGFGESMDTEAVQTTLEAMRIQ 208

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BLAST of mRNA_P-canaliculata_contig9692.23741.1 vs. uniprot
Match: A0A7S2CGK4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CGK4_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.200e-38
Identity = 75/123 (60.98%), Postives = 90/123 (73.17%), Query Frame = 0

Query:    1 MTAGLYEGATFYFLVTIPPSYPFHAPSAVCTSRAWHPNIDLHSGFVSLPILTTDWRPVLSINTVVFALQLMFLEPSELMPVNESAAAALA-NPELFREQVRRTLAGGFLFGVQFEPHRQGSGC 122
            MT+G Y G +F F +TIPP+YPF+AP   CT+R WHPNI+ ++G V LPIL+ DWRPVLSINTVV ALQL+FLEP+     N +AA AL  NP+LF  QVR+TLAGG  FG  F   RQ SGC
Sbjct:   75 MTSGFYRGGSFIFRLTIPPTYPFYAPEVTCTTRVWHPNINPNNGRVDLPILSIDWRPVLSINTVVLALQLLFLEPNPDHATNYAAAEALTKNPQLFESQVRQTLAGGNFFGFDF--CRQISGC 195

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BLAST of mRNA_P-canaliculata_contig9692.23741.1 vs. uniprot
Match: A0A835Z4F7_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4F7_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.130e-34
Identity = 65/114 (57.02%), Postives = 83/114 (72.81%), Query Frame = 0

Query:    1 MTAGLYEGATFYFLVTIPPSYPFHAPSAVCTSRAWHPNIDLHSGFVSLPILTTDWRPVLSINTVVFALQLMFLEPSELMPVNESAAAA-LANPELFREQVRRTLAGGFLFGVQF 113
            M  G+Y GA+F F++ +P +YPF AP    T R WHP++ L +G V LPIL  DWRPVL+I+TVVFALQLM LEPS   P N++AAAA L+ P++FREQVR TL GG+  G +F
Sbjct:   49 METGIYMGASFTFVIEVPANYPFTAPRVTSTGRIWHPSVHLTTGCVRLPILEADWRPVLTIHTVVFALQLMLLEPSHEYPANDAAAAAALSTPDVFREQVRCTLRGGWFVGHEF 162

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BLAST of mRNA_P-canaliculata_contig9692.23741.1 vs. uniprot
Match: A0A7S2S1V2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1V2_9STRA)

HSP 1 Score: 133 bits (334), Expect = 6.830e-32
Identity = 68/119 (57.14%), Postives = 82/119 (68.91%), Query Frame = 0

Query:    1 MTAGLYEGATFYFLVTIPPSYPFHAPSAVCTSRAWHPNIDLHSGFVSLPILTTDWRPVLSINTVVFALQLMFLEPSELMPVNESAAAALAN-PELFREQVRRTLAGGFLFGVQFEPHRQ 118
            M  GLY G +F F + IPPSYPFHAP+ VC +R  HPNIDL +G V LP+L  DWRPVL++NTVVF LQL+FLEP+     N  AA AL + P  F  +VR TL GG  FGV+F P+ Q
Sbjct:   85 MLGGLYRGGSFTFHILIPPSYPFHAPNVVCMTRVLHPNIDLETGQVLLPLLVEDWRPVLNLNTVVFGLQLLFLEPNPERACNIPAAQALVHVPAQFEARVRETLQGGVFFGVKF-PYNQ 202

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BLAST of mRNA_P-canaliculata_contig9692.23741.1 vs. uniprot
Match: A0A7R9YDT8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDT8_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.250e-31
Identity = 79/183 (43.17%), Postives = 103/183 (56.28%), Query Frame = 0

Query:    1 MTAGLYEGATFYFLVTIPPSYPFHAPSAVCTSRAWHPNIDLHSGFVSLPILTTDWRPVLSINTVVFALQLMFLEPSELMPVN-ESAAAALANPELFREQVRRTLAGGFLFGVQFEPHRQGSGCGNSDGPGAAQKRKRGEGM-----------DTEEVQTTLEAMRIQEDGHVEESSAWEKRPR 171
            M  G+Y G  F F + +P SYPF  P   CTSR WHPNI L +G VSL IL  DW+PV+S+NTVVF LQL+FLEP+  + VN E+ AA L  PE+   QVR+T  GG   G  F   + G    + +      +RKR   M           D EE  ++L+ M I+E  H E+S+   KRP+
Sbjct:   48 MQTGVYAGGRFSFKIDVPHSYPFSPPQVHCTSRVWHPNICLRTGRVSLSILDEDWKPVISLNTVVFGLQLLFLEPNADLSVNNEATAALLKGPEVLARQVRQTFRGGLFGGFAFSAQKMGLRRPSPE------RRKRSGTMKRKSFGVDRESDDEEAISSLQYMTIEE--HSEQSTHTRKRPK 222

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BLAST of mRNA_P-canaliculata_contig9692.23741.1 vs. uniprot
Match: A0A329RS56_9STRA (UBC core domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329RS56_9STRA)

HSP 1 Score: 125 bits (315), Expect = 5.120e-31
Identity = 62/115 (53.91%), Postives = 78/115 (67.83%), Query Frame = 0

Query:    3 AGLYEGATFYFLVTIPPSYPFHAPSAVCTSRAWHPNIDLHSGFVSLPILTTDWRPVLSINTVVFALQLMFLEPSELMPVNESAAAAL-ANPELFREQVRRTLAGGFLFGVQFEPH 116
            +G +    F F V IP +YPFHAPS  C SR WHPNID+ +G V +PIL  DWRPVLSINTV+  LQL+FLEP     +N +AA  L  NPE F+++V++ L GG  +GV F PH
Sbjct:   55 SGPFANGDFTFFVDIPKTYPFHAPSVRCLSRVWHPNIDIATGKVMMPILGKDWRPVLSINTVLLGLQLIFLEPGIDYVLNPAAAEQLHRNPEQFKKEVQQILCGGRFYGVDFPPH 169

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BLAST of mRNA_P-canaliculata_contig9692.23741.1 vs. uniprot
Match: A0A485LTQ9_9STRA (Aste57867_24886 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTQ9_9STRA)

HSP 1 Score: 122 bits (307), Expect = 6.550e-30
Identity = 62/116 (53.45%), Postives = 73/116 (62.93%), Query Frame = 0

Query:    2 TAGLYEGATFYFLVTIPPSYPFHAPSAVCTSRAWHPNIDLHSGFVSLPILTTDWRPVLSINTVVFALQLMFLEPSELMPVNESAAAALA-NPELFREQVRRTLAGGFLFGVQFEPH 116
            T G Y    F F   IP +YPFHAP      R WHPN+D+H+G V   IL  DWRPVLSINT++  LQL+FLEPS    VN+ AA  L  NP+LFR+QV+ TL GG  FG  F  H
Sbjct:   54 TGGPYANGDFRFRFDIPRTYPFHAPLVFSLDRIWHPNVDVHTGRVMFSILGKDWRPVLSINTILLGLQLIFLEPSIESAVNQPAADTLVQNPQLFRKQVQHTLRGGTYFGFDFPEH 169

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BLAST of mRNA_P-canaliculata_contig9692.23741.1 vs. uniprot
Match: A0A484E8K9_BRELC (UBC core domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8K9_BRELC)

HSP 1 Score: 122 bits (305), Expect = 1.490e-29
Identity = 59/115 (51.30%), Postives = 78/115 (67.83%), Query Frame = 0

Query:    3 AGLYEGATFYFLVTIPPSYPFHAPSAVCTSRAWHPNIDLHSGFVSLPILTTDWRPVLSINTVVFALQLMFLEPSELMPVNESAAAAL-ANPELFREQVRRTLAGGFLFGVQFEPH 116
            +G +    F FLV IP +YPFHAP   C +R WHPNID+ +G V +PI+  DWRPVLSINTV+  LQL+FLEP     +N +AA  L  NPE F++++++ L GG  +GV F PH
Sbjct:   55 SGPFANGDFTFLVDIPKTYPFHAPGVRCLTRVWHPNIDITTGKVMMPIIGKDWRPVLSINTVLLGLQLIFLEPGIDHALNITAAEQLHQNPESFKKEMQQILCGGRFYGVDFPPH 169

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BLAST of mRNA_P-canaliculata_contig9692.23741.1 vs. uniprot
Match: G4Z9T7_PHYSP (UBC core domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4Z9T7_PHYSP)

HSP 1 Score: 121 bits (303), Expect = 2.930e-29
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 0

Query:    3 AGLYEGATFYFLVTIPPSYPFHAPSAVCTSRAWHPNIDLHSGFVSLPILTTDWRPVLSINTVVFALQLMFLEPSELMPVNESAAAALA-NPELFREQVRRTLAGGFLFGVQFEPH 116
            +G +    F F V IP +YPFH PS  C +R WHPNID+ +G V +PIL TDWRPVLSINTV+  LQL+FLEP     +N  AA  L  NPE F+++V++ L GG  +GV F  H
Sbjct:   55 SGPFANGDFTFFVEIPKTYPFHPPSVKCLTRVWHPNIDMATGKVMMPILGTDWRPVLSINTVLLGLQLIFLEPVNHNILNPVAAEQLRQNPEQFKKEVQQILCGGKFYGVDFPAH 169

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BLAST of mRNA_P-canaliculata_contig9692.23741.1 vs. uniprot
Match: W2JGX7_PHYPR (UBC core domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2JGX7_PHYPR)

HSP 1 Score: 124 bits (310), Expect = 3.410e-29
Identity = 61/115 (53.04%), Postives = 77/115 (66.96%), Query Frame = 0

Query:    3 AGLYEGATFYFLVTIPPSYPFHAPSAVCTSRAWHPNIDLHSGFVSLPILTTDWRPVLSINTVVFALQLMFLEPSELMPVNESAAAAL-ANPELFREQVRRTLAGGFLFGVQFEPH 116
            +G +    F F V IP +YPFHAPS  C +R WHPNID+ +G V +PIL  DWRPVLSINTV+  LQL+FLEP     +N +AA  L  NPE F+ +V++ L GG  +GV F PH
Sbjct:  170 SGPFANGDFTFFVDIPKTYPFHAPSVRCLTRVWHPNIDIATGKVMMPILGKDWRPVLSINTVLLGLQLIFLEPGIDYILNPAAAEQLHRNPEQFKNEVQQILCGGRFYGVDFPPH 284

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig9692.23741.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig9692.23741.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LNS9_ECTSI	2.010e-72	76.58	UBC core domain-containing protein n=2 Tax=Ectocar...	[more]
A0A7S2CGK4_9STRA	1.200e-38	60.98	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A835Z4F7_9STRA	1.130e-34	57.02	Ubiquitin-conjugating enzyme/RWD-like protein (Fra...	[more]
A0A7S2S1V2_9STRA	6.830e-32	57.14	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7R9YDT8_9STRA	1.250e-31	43.17	Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi...	[more]
A0A329RS56_9STRA	5.120e-31	53.91	UBC core domain-containing protein n=3 Tax=Phytoph...	[more]
A0A485LTQ9_9STRA	6.550e-30	53.45	Aste57867_24886 protein n=1 Tax=Aphanomyces stella...	[more]
A0A484E8K9_BRELC	1.490e-29	51.30	UBC core domain-containing protein n=1 Tax=Bremia ...	[more]
G4Z9T7_PHYSP	2.930e-29	52.17	UBC core domain-containing protein n=3 Tax=Phytoph...	[more]
W2JGX7_PHYPR	3.410e-29	53.04	UBC core domain-containing protein n=12 Tax=Phytop...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00212	ubc_7	coord: 1..108 e-value: 7.4E-4 score: 18.5
None	No IPR available	PANTHER	PTHR24068	FAMILY NOT NAMED	coord: 3..114
None	No IPR available	PANTHER	PTHR24068:SF132	NEDD8-CONJUGATING ENZYME UBC12	coord: 3..114
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 4..101 e-value: 1.2E-22 score: 80.1
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBIQUITIN_CONJUGAT_2	coord: 1..86 score: 19.653
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10		coord: 1..119 e-value: 3.2E-28 score: 100.1
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 4..112

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig9692	contig	P-canaliculata_contig9692:2599..6157 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig9692.23741.1	mRNA_P-canaliculata_contig9692.23741.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig9692 1909..7044 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig9692.23741.1 ID=prot_P-canaliculata_contig9692.23741.1|Name=mRNA_P-canaliculata_contig9692.23741.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=316bp
MTAGLYEGATFYFLVTIPPSYPFHAPSAVCTSRAWHPNIDLHSGFVSLPI
LTTDWRPVLSINTVVFALQLMFLEPSELMPVNESAAAALANPELFREQVR
RTLAGGFLFGVQFEPHRQGSGCGNSDGPGAAQKRKRGEGMDTEEVQTTLE
AMRIQEDGHVEESSAWEKRPRYQRQSKSPFAFEQPPRNQPSPVPTQMEGV
GGSALLTLSNAAGGQPYLSFLEQQQQAQAQTQAQSSAMAEGEALFASPSL
VGGASFDRMRFHELNEADMSAAAPIGFRCSGAQEGVAQPMNSVVKEGSTV
WGSGQFQAIPAPSLR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000608	UBQ-conjugat_E2
IPR016135	UBQ-conjugating_enzyme/RWD