prot_P-canaliculata_contig96901.23736.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig96901.23736.1
Unique Nameprot_P-canaliculata_contig96901.23736.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length224
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig96901.23736.1 vs. uniprot
Match: X0RYM9_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0RYM9_9ZZZZ)

HSP 1 Score: 54.7 bits (130), Expect = 2.030e-5
Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 0 
Query:   85 SGRKRGHVGYTDGCNLPFQGICADAFKAAAIEIMREIELPPSYLNEQGIEIGALLHDEFMTMGPPET-VRRWAGRVKHLMCEAARQVMPDCGI 176
            SGR RGHVG++   N PFQG+ AD  K A   ++R            G ++   +HDE + + P  T  +  A +V+ ++  A +++ PD  I
Sbjct:  131 SGRLRGHVGFSQKANTPFQGLAADGNKLALFRLLRA-----------GFQVCGFIHDEMLILVPDGTDYQAAADQVQQILASAMQELCPDIPI 212
[Close]
BLAST of mRNA_P-canaliculata_contig96901.23736.1 vs. uniprot
Match: A0A5C7LZ48_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A5C7LZ48_9HYPH)

HSP 1 Score: 53.9 bits (128), Expect = 7.790e-5
Identity = 38/110 (34.55%), Postives = 54/110 (49.09%), Query Frame = 0 
Query:   75 GRKFDYVHPWSGRKRGHVGYTDGCNLPFQGICADAFKAAAIEIMREIELPPSYLNEQGIEIGA----LLHDEFMTMGPPETVRRWAG--RVKHLMCEAARQVMPDCGIRA 178
            G  +D +HPWSGR R  + +TD  N PF G+  D F A A+  +   +   S L       G      +HD  +++ P E  R  A   R+  +M  AAR+V+PD G  A
Sbjct:  625 GSLYDLIHPWSGRVRAGLKFTDVHNYPFSGLAQD-FAAVALWDLYCAKWGASELGFADPFYGCHPCLFVHDAIVSLVPEEINRANAAAKRMGEIMTTAARKVLPDVGCEA 733
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig96901.23736.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
X0RYM9_9ZZZZ2.030e-532.26Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A5C7LZ48_9HYPH7.790e-534.55Uncharacterized protein n=1 Tax=Hyphomicrobiaceae ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002298DNA polymerase APRINTSPR00868DNAPOLIcoord: 99..115
score: 48.19
coord: 4..29
score: 30.18
NoneNo IPR availableGENE3D3.30.70.370coord: 62..189
e-value: 2.0E-5
score: 26.3
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 3..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig96901contigP-canaliculata_contig96901:6..677 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig96901.23736.1mRNA_P-canaliculata_contig96901.23736.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig96901 6..677 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig96901.23736.1 ID=prot_P-canaliculata_contig96901.23736.1|Name=mRNA_P-canaliculata_contig96901.23736.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=224bp
EDVRQLSKIVNFGAAGGMGAETFLSNMDEQMREVMTELNPDAPLNEVMRQ
ILDDWREQWNMHQYFQWVSKKTRGGRKFDYVHPWSGRKRGHVGYTDGCNL
PFQGICADAFKAAAIEIMREIELPPSYLNEQGIEIGALLHDEFMTMGPPE
TVRRWAGRVKHLMCEAARQVMPDCGIRAGAEVTGTVWSKSGCSVEEFEVL
HREGLRAEDYLRCKKKDKTLTLND
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002298DNA_polymerase_A